CmoCh05G002480.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G002480.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 1065047 .. 1066307 (-)
Sequence length732
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAATTAAAAAAAAATAATAATAAATGGAGGTTGAATCTTCGCCTTCTATTGTTCATCGGCGAAACTGATCGCCGCCGTCCCATCCAGCAGTAATCGTGAACCACAATCTCTCTCTTATAAGCGTTTTCCACGTGGTGCAAACAATCCGTGTTCGAAGATGATTCAGATTCAGCAACCGGAACGAGAGATCAAACCACGAGGCCTCCGCCCAATTTCCGGTGGATAGGGAATCGAAAATTAGGGTTACGATTCCATTTTCCCAAATTATGTGTGATAACTATGATTCTGGGTTCGAATTCAATCTCCTCTACTCTTCATTTGTTTTGGGAATTTAGATTTGTTCTCTTTCTTTCTCTTTCTCCTTCTCTCCCCTCTGCTTCAATTTCCCAATGCGACAGCTCCTAATCCAACATCTGTCGCGTCCATTTCGGAATCTGATTCTCTCTTCTCCTTTTTCTATATTTTTCTCCCTTCATTTTTAACTCTCCCTCCCCTTAAATGCCTATTTAAATTCCCACTATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGGTTCGTCTTCTTTTTCTTCTTCTTTTCTTTCCTATATTTAATGTTGGGTTTGACGTCTGTGGTGCATTTACAACTCTACCAAAATAGGGTCAATTCAAACGTGTTATTAACTCCCCCTTTAATAATTTCTGCGTTCCCTGTTCTATCTTCTCAACCTTCATTTCCATACGTTGCTCGGTTGTAATTAACGTTTTAGTGTACCTTTTGAGGATTTAGCTCGATTCTGATTCGGGTTCGTTGCTCAATTTGCCTTTTCCTCTCACATGTATGTCCCGGTGTTCCTGTCTATTTGTTTTTGTTTATGTATGTATCAAGATTGTATGCTTATTTGTACGTGTTTTCCTGTTTATTGGGGCAAAATTTGAAGATTTTGTCATTGAAGAATTGTGTCCTTGAGTGAGATATTTAAAGACCCTAAAAGGGTTCTTTCCTTTTTGTTTGAAAGAGTTGGATTTTTGGTGTGGATTGGATTTGGGTTTGGCTTGGTTTATCAGAAGGTTTGTTATTTCAACTTCTGAATTTTTTTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA

mRNA sequence

AATAAATTAAAAAAAAATAATAATAAATGGAGGTTGAATCTTCGCCTTCTATTGTTCATCGGCGAAACTGATCGCCGCCGTCCCATCCAGCAGTAATCGTGAACCACAATCTCTCTCTTATAAGCGTTTTCCACGTGGTGCAAACAATCCGTGTTCGAAGATGATTCAGATTCAGCAACCGGAACGAGAGATCAAACCACGAGGCCTCCGCCCAATTTCCGGTGGATAGGGAATCGAAAATTAGGGTTACGATTCCATTTTCCCAAATTATGTGTGATAACTATGATTCTGGGTTCGAATTCAATCTCCTCTACTCTTCATTTGTTTTGGGAATTTAGATTTGTTCTCTTTCTTTCTCTTTCTCCTTCTCTCCCCTCTGCTTCAATTTCCCAATGCGACAGCTCCTAATCCAACATCTGTCGCGTCCATTTCGGAATCTGATTCTCTCTTCTCCTTTTTCTATATTTTTCTCCCTTCATTTTTAACTCTCCCTCCCCTTAAATGCCTATTTAAATTCCCACTATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA

Coding sequence (CDS)

ATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA
Homology
[Close]
BLAST of CmoCh05G002480.1 vs. TrEMBL
Match: A0A0A0LRH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361660 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match: gi|659087936|ref|XP_008444714.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS +FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPSFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match: gi|700207482|gb|KGN62601.1| (hypothetical protein Csa_2G361660 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match: gi|778671342|ref|XP_011649621.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match: gi|449469981|ref|XP_004152697.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match: gi|778671346|ref|XP_011649622.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X3 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

The following BLAST results are available for this feature:
BLAST of CmoCh05G002480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G002480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRH5_CUCSA1.7e-1180.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361660 PE=4 SV=1[more]
BLAST of CmoCh05G002480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G002480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087936|ref|XP_008444714.1|1.8e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis melo][more]
gi|700207482|gb|KGN62601.1|2.4e-1180.00hypothetical protein Csa_2G361660 [Cucumis sativus][more]
gi|778671342|ref|XP_011649621.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Cucumis sativ... [more]
gi|449469981|ref|XP_004152697.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis sativ... [more]
gi|778671346|ref|XP_011649622.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X3 [Cucumis sativ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G002480CmoCh05G002480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G002480.1CmoCh05G002480.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G002480.1.CDS.2CmoCh05G002480.1.CDS.2CDS
CmoCh05G002480.1.CDS.1CmoCh05G002480.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G002480.1.five_prime_UTR.1CmoCh05G002480.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G002480.1.exon.2CmoCh05G002480.1.exon.2exon
CmoCh05G002480.1.exon.1CmoCh05G002480.1.exon.1exon