CmoCh05G002480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G002480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 1065047 .. 1066307 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAATTAAAAAAAAATAATAATAAATGGAGGTTGAATCTTCGCCTTCTATTGTTCATCGGCGAAACTGATCGCCGCCGTCCCATCCAGCAGTAATCGTGAACCACAATCTCTCTCTTATAAGCGTTTTCCACGTGGTGCAAACAATCCGTGTTCGAAGATGATTCAGATTCAGCAACCGGAACGAGAGATCAAACCACGAGGCCTCCGCCCAATTTCCGGTGGATAGGGAATCGAAAATTAGGGTTACGATTCCATTTTCCCAAATTATGTGTGATAACTATGATTCTGGGTTCGAATTCAATCTCCTCTACTCTTCATTTGTTTTGGGAATTTAGATTTGTTCTCTTTCTTTCTCTTTCTCCTTCTCTCCCCTCTGCTTCAATTTCCCAATGCGACAGCTCCTAATCCAACATCTGTCGCGTCCATTTCGGAATCTGATTCTCTCTTCTCCTTTTTCTATATTTTTCTCCCTTCATTTTTAACTCTCCCTCCCCTTAAATGCCTATTTAAATTCCCACTATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGGTTCGTCTTCTTTTTCTTCTTCTTTTCTTTCCTATATTTAATGTTGGGTTTGACGTCTGTGGTGCATTTACAACTCTACCAAAATAGGGTCAATTCAAACGTGTTATTAACTCCCCCTTTAATAATTTCTGCGTTCCCTGTTCTATCTTCTCAACCTTCATTTCCATACGTTGCTCGGTTGTAATTAACGTTTTAGTGTACCTTTTGAGGATTTAGCTCGATTCTGATTCGGGTTCGTTGCTCAATTTGCCTTTTCCTCTCACATGTATGTCCCGGTGTTCCTGTCTATTTGTTTTTGTTTATGTATGTATCAAGATTGTATGCTTATTTGTACGTGTTTTCCTGTTTATTGGGGCAAAATTTGAAGATTTTGTCATTGAAGAATTGTGTCCTTGAGTGAGATATTTAAAGACCCTAAAAGGGTTCTTTCCTTTTTGTTTGAAAGAGTTGGATTTTTGGTGTGGATTGGATTTGGGTTTGGCTTGGTTTATCAGAAGGTTTGTTATTTCAACTTCTGAATTTTTTTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA

mRNA sequence

AATAAATTAAAAAAAAATAATAATAAATGGAGGTTGAATCTTCGCCTTCTATTGTTCATCGGCGAAACTGATCGCCGCCGTCCCATCCAGCAGTAATCGTGAACCACAATCTCTCTCTTATAAGCGTTTTCCACGTGGTGCAAACAATCCGTGTTCGAAGATGATTCAGATTCAGCAACCGGAACGAGAGATCAAACCACGAGGCCTCCGCCCAATTTCCGGTGGATAGGGAATCGAAAATTAGGGTTACGATTCCATTTTCCCAAATTATGTGTGATAACTATGATTCTGGGTTCGAATTCAATCTCCTCTACTCTTCATTTGTTTTGGGAATTTAGATTTGTTCTCTTTCTTTCTCTTTCTCCTTCTCTCCCCTCTGCTTCAATTTCCCAATGCGACAGCTCCTAATCCAACATCTGTCGCGTCCATTTCGGAATCTGATTCTCTCTTCTCCTTTTTCTATATTTTTCTCCCTTCATTTTTAACTCTCCCTCCCCTTAAATGCCTATTTAAATTCCCACTATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA

Coding sequence (CDS)

ATGCGAATTCCCAGGAGACAGGTTTCTCTTTGCCTCTCCTTGTTCTCGCTCGACTTCGCATACCCTTTTTCCTCCTCAAATTTTCTCGGAAATCCCAATTGCTTTATCCGCAAACCCAAAGGGATTCATACCTTAGAATGTGTTTACCTCTCCCTTAGAAATGGCATCGAGAACACGATCATCTTGCTTCCTTTAGGCGTGAATTGCTGA
Homology
[Close]
BLAST of CmoCh05G002480 vs. TrEMBL
Match: A0A0A0LRH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361660 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480 vs. NCBI nr
Match: gi|659087936|ref|XP_008444714.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS +FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPSFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480 vs. NCBI nr
Match: gi|700207482|gb|KGN62601.1| (hypothetical protein Csa_2G361660 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480 vs. NCBI nr
Match: gi|778671342|ref|XP_011649621.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480 vs. NCBI nr
Match: gi|449469981|ref|XP_004152697.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

[Close]
BLAST of CmoCh05G002480 vs. NCBI nr
Match: gi|778671346|ref|XP_011649622.1| (PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X3 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MRIPRRQVSLCLSLFSLDFAYPFSSSNFLGNPNCFIRKPKGIHTL 46
          MRIPRRQVS CLSLFSL+F YP SS  FLG PN FIRKPK IHTL
Sbjct: 1  MRIPRRQVSFCLSLFSLEFTYPLSSPGFLGIPNSFIRKPKRIHTL 45

The following BLAST results are available for this feature:
BLAST of CmoCh05G002480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G002480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRH5_CUCSA1.7e-1180.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361660 PE=4 SV=1[more]
BLAST of CmoCh05G002480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087936|ref|XP_008444714.1|1.8e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis melo][more]
gi|700207482|gb|KGN62601.1|2.4e-1180.00hypothetical protein Csa_2G361660 [Cucumis sativus][more]
gi|778671342|ref|XP_011649621.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Cucumis sativ... [more]
gi|449469981|ref|XP_004152697.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Cucumis sativ... [more]
gi|778671346|ref|XP_011649622.1|2.4e-1180.00PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X3 [Cucumis sativ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G002480.1CmoCh05G002480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G002480Watermelon (97103) v1cmowmB748
CmoCh05G002480Watermelon (97103) v1cmowmB753
CmoCh05G002480Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G002480Cucurbita pepo (Zucchini)cmocpeB734
CmoCh05G002480Cucurbita pepo (Zucchini)cmocpeB740
CmoCh05G002480Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G002480Bottle gourd (USVL1VR-Ls)cmolsiB717
CmoCh05G002480Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G002480Cucumber (Gy14) v2cgybcmoB238
CmoCh05G002480Cucumber (Gy14) v2cgybcmoB397
CmoCh05G002480Melon (DHL92) v3.6.1cmomedB815
CmoCh05G002480Silver-seed gourdcarcmoB0147
CmoCh05G002480Silver-seed gourdcarcmoB0263
CmoCh05G002480Silver-seed gourdcarcmoB1265
CmoCh05G002480Silver-seed gourdcarcmoB1319
CmoCh05G002480Cucumber (Chinese Long) v3cmocucB0918
CmoCh05G002480Cucumber (Chinese Long) v3cmocucB0928
CmoCh05G002480Watermelon (97103) v2cmowmbB792
CmoCh05G002480Watermelon (97103) v2cmowmbB802
CmoCh05G002480Wax gourdcmowgoB0938
CmoCh05G002480Wax gourdcmowgoB0944
CmoCh05G002480Cucurbita maxima (Rimu)cmacmoB483
CmoCh05G002480Cucurbita moschata (Rifu)cmocmoB033
CmoCh05G002480Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G002480Cucurbita moschata (Rifu)cmocmoB369
CmoCh05G002480Cucumber (Gy14) v1cgycmoB0643
CmoCh05G002480Cucumber (Gy14) v1cgycmoB0940
CmoCh05G002480Cucurbita maxima (Rimu)cmacmoB064
CmoCh05G002480Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G002480Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G002480Wild cucumber (PI 183967)cmocpiB782
CmoCh05G002480Wild cucumber (PI 183967)cmocpiB791
CmoCh05G002480Cucumber (Chinese Long) v2cmocuB777
CmoCh05G002480Cucumber (Chinese Long) v2cmocuB788
CmoCh05G002480Melon (DHL92) v3.5.1cmomeB718
CmoCh05G002480Melon (DHL92) v3.5.1cmomeB721
CmoCh05G002480Watermelon (Charleston Gray)cmowcgB706
CmoCh05G002480Watermelon (Charleston Gray)cmowcgB716