CmoCh05G000650.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G000650.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 239007 .. 239609 (-)
Sequence length603
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA

mRNA sequence

ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA

Coding sequence (CDS)

ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA
Homology
[Close]
BLAST of CmoCh05G000650.1 vs. TrEMBL
Match: A0A151U8Y3_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_019931 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-29
Identity = 99/190 (52.11%), Postives = 111/190 (58.42%), Query Frame = 1 

Query: 8   MAGATTNSRSWPLLSLEDA---SAIMASSLAEASGAYMNPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RS P LSL  A   SAI   S AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAM 127
              WLSAGC ML RTHAMAGI GS  A PRLSPS AI AIC AAKA S   R +  APA 
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPS-AIWAICCAAKAASQLPRVQNVAPAS 120

Query: 128 AVVERKADKLECSLDFDEISPFGRFWRERR---EMGLGISFGVLWFLVELMLVHLTLSTA 187
           AVV             D   PFGR W ++R   E     S G+LW LV        ++ A
Sbjct: 121 AVV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIA 176

Query: 188 IVAMVAAIEV 191
           +VAMVAAI V
Sbjct: 181 VVAMVAAIVV 176

[Close]
BLAST of CmoCh05G000650.1 vs. TrEMBL
Match: A0A151TKL7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_023933 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.3e-15
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 58  PLSLRILFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAE 117
           PL LR+ F W  AGC ML  THAMAGI GS  A PRLS  +A++AICWAAKA S   RAE
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVVERKADKLECSLDFDEISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLT 177
           KTAPA+AV               E+  FG      R +G  G+S G+   L  L+L H  
Sbjct: 63  KTAPAIAV---------------EVDSFG----SGRVVGFDGMSLGLGLGLGSLVLRHFA 116

Query: 178 LSTAIVAMVAAIE 190
           L  A+  +VAAI+
Sbjct: 123 LIVAMADIVAAID 116

[Close]
BLAST of CmoCh05G000650.1 vs. NCBI nr
Match: gi|1012364550|gb|KYP75732.1| (hypothetical protein KK1_019931, partial [Cajanus cajan])

HSP 1 Score: 136.0 bits (341), Expect = 7.4e-29
Identity = 99/190 (52.11%), Postives = 111/190 (58.42%), Query Frame = 1 

Query: 8   MAGATTNSRSWPLLSLEDA---SAIMASSLAEASGAYMNPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RS P LSL  A   SAI   S AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAM 127
              WLSAGC ML RTHAMAGI GS  A PRLSPS AI AIC AAKA S   R +  APA 
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPS-AIWAICCAAKAASQLPRVQNVAPAS 120

Query: 128 AVVERKADKLECSLDFDEISPFGRFWRERR---EMGLGISFGVLWFLVELMLVHLTLSTA 187
           AVV             D   PFGR W ++R   E     S G+LW LV        ++ A
Sbjct: 121 AVV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIA 176

Query: 188 IVAMVAAIEV 191
           +VAMVAAI V
Sbjct: 181 VVAMVAAIVV 176

[Close]
BLAST of CmoCh05G000650.1 vs. NCBI nr
Match: gi|1012356402|gb|KYP67588.1| (hypothetical protein KK1_023933 [Cajanus cajan])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 58  PLSLRILFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAE 117
           PL LR+ F W  AGC ML  THAMAGI GS  A PRLS  +A++AICWAAKA S   RAE
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVVERKADKLECSLDFDEISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLT 177
           KTAPA+AV               E+  FG      R +G  G+S G+   L  L+L H  
Sbjct: 63  KTAPAIAV---------------EVDSFG----SGRVVGFDGMSLGLGLGLGSLVLRHFA 116

Query: 178 LSTAIVAMVAAIE 190
           L  A+  +VAAI+
Sbjct: 123 LIVAMADIVAAID 116

The following BLAST results are available for this feature:
BLAST of CmoCh05G000650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G000650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151U8Y3_CAJCA5.2e-2952.11Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_019931 PE=4 SV=1[more]
A0A151TKL7_CAJCA7.3e-1547.37Uncharacterized protein OS=Cajanus cajan GN=KK1_023933 PE=4 SV=1[more]
BLAST of CmoCh05G000650.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G000650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012364550|gb|KYP75732.1|7.4e-2952.11hypothetical protein KK1_019931, partial [Cajanus cajan][more]
gi|1012356402|gb|KYP67588.1|1.0e-1447.37hypothetical protein KK1_023933 [Cajanus cajan][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G000650CmoCh05G000650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G000650.1CmoCh05G000650.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G000650.1.CDS.1CmoCh05G000650.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G000650.1.exon.1CmoCh05G000650.1.exon.1exon