CmoCh04G024940.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTGGTTGATTCTTTTCGGTTTGGTTAATTTTCCATTGCTTAACTCCTTCTGCATTTGAAATGAAGGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGGTTGGACATCGATTAAACTTCTAGTTATCTCTTTTTCAGCAGTTTTAATCACGCATACTCTCTATTTTTCGCCATAGACTGAAGAACACGGTTGGGAATGAGATTTATTTAGGATTTGTACGAGCTTCATTTGTGTGTATATGTTGATTCTTCTGCCAATGTGATCCTCATGTTGGTGTAATATTTTTAAGCTGACTTGATAGACATGTTGCCTTCCACTAAGTTGTTGAGGATGGTTGGGAATGAGTCACACATTAGCTAATTAAGGAAATGATCACGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCTTGCAAAGCTATGAGAGATTATGCTCAAAGTGGATAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATGGTATCAGAACCATGCTTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTCAAATAAAGGGTGTACTTTGTTCAAAGGCTCCAAAGAATGAGTTGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGCCTCATGGGAGGCTCTATGGTGTACTTTATTTTAGGGGAGGATTGTTGGGAAGGAGTCGCGCATTGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTTGTATGAGGTATTTTGGGGAAACCAAAAGCAAAGCCATGAAAGCTTATGTTCAAAGTAGACAATATCATACTGTTGTGGAAATCCGTGATTCCTAACATGATATCAGAGTCATGTCCATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCTTTAAAGATACAGTCAAAAGTGACTCAAGTGTAATTTGTTCGAGATCTCCAGAGAAGGAGTAGAGCCTTGATTTAGGGGAGACTATTCGAGGAAGGTTTTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAGGAGTCTCACATCGGCTAATTAAGAGGTTGATCATGGGTTTATGAGTAAATGTTCAAAGTGGACAATATCATACTATTGTGGAGGTATGTAGCATGAATATGATAGGAAAATTTAGTAGCAAAAAAGATTGATTTTCTAGCGAGAGAACTTTGGCTTGAATTACATTGTTGGACAATTGACATGAACCAATTACTAATGGAAGCATTGCACAATTGTTCCTAGGACTCATAAAAGAAAGAAATGGGCTGTGGTCTTGGAGTTTTTGCTAAAGCTAATGATCTATTTGAAAGTTCTCTTTGGATTATCTTGTCATCTGCTTCATGGAAGGCTTCTTCCATCACTACGTGCATTGAGCATTGACCAACAAAGTTAAGTTTTGGTAATGGAAACAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGTATTAAGATATGATATAATAGCACCAGATACTAAGGTCTGAATAAATTGTGTACCATTTCTGTGAAGGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09 Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: I1GVE5_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon GN=BRADI_1g30440 PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: I1GVE6_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: A0A067GYK4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: V5IV06_HEVBR (Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC1 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: A0A067GLE8_CITSI (Proteasome subunit beta type OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TAIR10
Match: AT1G77440.1 (AT1G77440.1 20S proteasome beta subunit C2) HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. TAIR10
Match: AT1G21720.1 (AT1G21720.1 proteasome beta subunit C1) HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|659133863|ref|XP_008466929.1| (PREDICTED: proteasome subunit beta type-3-like, partial [Cucumis melo]) HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09 Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|944058094|gb|KQJ93684.1| (hypothetical protein BRADI_3g06140, partial [Brachypodium distachyon]) HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|802636879|ref|XP_012078289.1| (PREDICTED: proteasome subunit beta type-3-A [Jatropha curcas]) HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|670416147|ref|XP_008649041.1| (PREDICTED: proteasome subunit beta type-3 [Zea mays]) HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|514708971|ref|XP_004951671.1| (PREDICTED: proteasome subunit beta type-3 [Setaria italica]) HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
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