CmoCh04G024940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G024940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProteasome subunit beta type (3.4.25.1)
LocationCmo_Chr04 : 18360631 .. 18362598 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTGGTTGATTCTTTTCGGTTTGGTTAATTTTCCATTGCTTAACTCCTTCTGCATTTGAAATGAAGGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGGTTGGACATCGATTAAACTTCTAGTTATCTCTTTTTCAGCAGTTTTAATCACGCATACTCTCTATTTTTCGCCATAGACTGAAGAACACGGTTGGGAATGAGATTTATTTAGGATTTGTACGAGCTTCATTTGTGTGTATATGTTGATTCTTCTGCCAATGTGATCCTCATGTTGGTGTAATATTTTTAAGCTGACTTGATAGACATGTTGCCTTCCACTAAGTTGTTGAGGATGGTTGGGAATGAGTCACACATTAGCTAATTAAGGAAATGATCACGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCTTGCAAAGCTATGAGAGATTATGCTCAAAGTGGATAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATGGTATCAGAACCATGCTTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTCAAATAAAGGGTGTACTTTGTTCAAAGGCTCCAAAGAATGAGTTGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGCCTCATGGGAGGCTCTATGGTGTACTTTATTTTAGGGGAGGATTGTTGGGAAGGAGTCGCGCATTGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTTGTATGAGGTATTTTGGGGAAACCAAAAGCAAAGCCATGAAAGCTTATGTTCAAAGTAGACAATATCATACTGTTGTGGAAATCCGTGATTCCTAACATGATATCAGAGTCATGTCCATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCTTTAAAGATACAGTCAAAAGTGACTCAAGTGTAATTTGTTCGAGATCTCCAGAGAAGGAGTAGAGCCTTGATTTAGGGGAGACTATTCGAGGAAGGTTTTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAGGAGTCTCACATCGGCTAATTAAGAGGTTGATCATGGGTTTATGAGTAAATGTTCAAAGTGGACAATATCATACTATTGTGGAGGTATGTAGCATGAATATGATAGGAAAATTTAGTAGCAAAAAAGATTGATTTTCTAGCGAGAGAACTTTGGCTTGAATTACATTGTTGGACAATTGACATGAACCAATTACTAATGGAAGCATTGCACAATTGTTCCTAGGACTCATAAAAGAAAGAAATGGGCTGTGGTCTTGGAGTTTTTGCTAAAGCTAATGATCTATTTGAAAGTTCTCTTTGGATTATCTTGTCATCTGCTTCATGGAAGGCTTCTTCCATCACTACGTGCATTGAGCATTGACCAACAAAGTTAAGTTTTGGTAATGGAAACAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGTATTAAGATATGATATAATAGCACCAGATACTAAGGTCTGAATAAATTGTGTACCATTTCTGTGAAGGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

mRNA sequence

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

Coding sequence (CDS)

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA
Homology
[Close]
BLAST of CmoCh04G024940 vs. Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940 vs. Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940 vs. Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKP+TFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQR  ++HKL+QLREER+M+PETFASLVSA LYEK
Sbjct: 63 LYQRFAFRHKLYQLREERNMRPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TrEMBL
Match: I1GVE5_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon GN=BRADI_1g30440 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TrEMBL
Match: I1GVE6_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TrEMBL
Match: A0A067GYK4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TrEMBL
Match: V5IV06_HEVBR (Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TrEMBL
Match: A0A067GLE8_CITSI (Proteasome subunit beta type OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TAIR10
Match: AT1G77440.1 (AT1G77440.1 20S proteasome beta subunit C2)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940 vs. TAIR10
Match: AT1G21720.1 (AT1G21720.1 proteasome beta subunit C1)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940 vs. NCBI nr
Match: gi|659133863|ref|XP_008466929.1| (PREDICTED: proteasome subunit beta type-3-like, partial [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS 61
          LYQRLVYQHKL+QLREERDMKPETFASLVS RLYEK + +
Sbjct: 56 LYQRLVYQHKLYQLREERDMKPETFASLVSTRLYEKRLDN 95

[Close]
BLAST of CmoCh04G024940 vs. NCBI nr
Match: gi|944058094|gb|KQJ93684.1| (hypothetical protein BRADI_3g06140, partial [Brachypodium distachyon])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
           LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 117 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 152

[Close]
BLAST of CmoCh04G024940 vs. NCBI nr
Match: gi|802636879|ref|XP_012078289.1| (PREDICTED: proteasome subunit beta type-3-A [Jatropha curcas])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. NCBI nr
Match: gi|670416147|ref|XP_008649041.1| (PREDICTED: proteasome subunit beta type-3 [Zea mays])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940 vs. NCBI nr
Match: gi|514708971|ref|XP_004951671.1| (PREDICTED: proteasome subunit beta type-3 [Setaria italica])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

The following BLAST results are available for this feature:
BLAST of CmoCh04G024940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSB3A_ARATH7.4e-1088.89Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2[more]
PSB3B_ARATH7.4e-1088.89Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1[more]
PSB3_ORYSJ1.3e-0986.11Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1[more]
PSB3_PICMA4.0e-0877.78Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1[more]
BLAST of CmoCh04G024940 vs. TrEMBL
Match NameE-valueIdentityDescription
I1GVE5_BRADI6.3e-0888.89Proteasome subunit beta type OS=Brachypodium distachyon GN=BRADI_1g30440 PE=3 SV... [more]
I1GVE6_BRADI6.3e-0888.89Proteasome subunit beta type OS=Brachypodium distachyon PE=3 SV=1[more]
A0A067GYK4_CITSI6.3e-0888.89Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1[more]
V5IV06_HEVBR6.3e-0888.89Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC1 PE=2 SV=1[more]
A0A067GLE8_CITSI6.3e-0888.89Proteasome subunit beta type OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1[more]
BLAST of CmoCh04G024940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77440.14.1e-1188.89 20S proteasome beta subunit C2[more]
AT1G21720.14.1e-1188.89 proteasome beta subunit C1[more]
BLAST of CmoCh04G024940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133863|ref|XP_008466929.1|2.8e-0985.00PREDICTED: proteasome subunit beta type-3-like, partial [Cucumis melo][more]
gi|944058094|gb|KQJ93684.1|9.0e-0888.89hypothetical protein BRADI_3g06140, partial [Brachypodium distachyon][more]
gi|802636879|ref|XP_012078289.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3-A [Jatropha curcas][more]
gi|670416147|ref|XP_008649041.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3 [Zea mays][more]
gi|514708971|ref|XP_004951671.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3 [Setaria italica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005839 proteasome core complex
molecular_function GO:0004298 threonine-type endopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024940.1CmoCh04G024940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G024940Wild cucumber (PI 183967)cmocpiB718
CmoCh04G024940Wild cucumber (PI 183967)cmocpiB770
CmoCh04G024940Cucumber (Chinese Long) v2cmocuB708
CmoCh04G024940Cucumber (Chinese Long) v2cmocuB761
CmoCh04G024940Melon (DHL92) v3.5.1cmomeB672
CmoCh04G024940Melon (DHL92) v3.5.1cmomeB698
CmoCh04G024940Watermelon (Charleston Gray)cmowcgB626
CmoCh04G024940Watermelon (Charleston Gray)cmowcgB680
CmoCh04G024940Watermelon (97103) v1cmowmB661
CmoCh04G024940Watermelon (97103) v1cmowmB726
CmoCh04G024940Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G024940Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G024940Cucurbita pepo (Zucchini)cmocpeB697
CmoCh04G024940Cucurbita pepo (Zucchini)cmocpeB709
CmoCh04G024940Bottle gourd (USVL1VR-Ls)cmolsiB664
CmoCh04G024940Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G024940Cucumber (Gy14) v2cgybcmoB523
CmoCh04G024940Cucumber (Gy14) v2cgybcmoB817
CmoCh04G024940Melon (DHL92) v3.6.1cmomedB760
CmoCh04G024940Melon (DHL92) v3.6.1cmomedB792
CmoCh04G024940Silver-seed gourdcarcmoB1121
CmoCh04G024940Cucumber (Chinese Long) v3cmocucB0835
CmoCh04G024940Cucumber (Chinese Long) v3cmocucB0900
CmoCh04G024940Watermelon (97103) v2cmowmbB701
CmoCh04G024940Watermelon (97103) v2cmowmbB760
CmoCh04G024940Wax gourdcmowgoB0865
CmoCh04G024940Wax gourdcmowgoB0915
CmoCh04G024940Cucurbita moschata (Rifu)cmocmoB030
CmoCh04G024940Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G024940Cucurbita moschata (Rifu)cmocmoB366
CmoCh04G024940Cucurbita moschata (Rifu)cmocmoB367
CmoCh04G024940Cucumber (Gy14) v1cgycmoB0079
CmoCh04G024940Cucurbita maxima (Rimu)cmacmoB059
CmoCh04G024940Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G024940Cucurbita maxima (Rimu)cmacmoB482
CmoCh04G024940Cucurbita maxima (Rimu)cmacmoB729