CmoCh04G024940.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G024940.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProteasome subunit beta type (3.4.25.1)
LocationCmo_Chr04 : 18360631 .. 18362598 (-)
Sequence length441
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTGGTTGATTCTTTTCGGTTTGGTTAATTTTCCATTGCTTAACTCCTTCTGCATTTGAAATGAAGGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGGTTGGACATCGATTAAACTTCTAGTTATCTCTTTTTCAGCAGTTTTAATCACGCATACTCTCTATTTTTCGCCATAGACTGAAGAACACGGTTGGGAATGAGATTTATTTAGGATTTGTACGAGCTTCATTTGTGTGTATATGTTGATTCTTCTGCCAATGTGATCCTCATGTTGGTGTAATATTTTTAAGCTGACTTGATAGACATGTTGCCTTCCACTAAGTTGTTGAGGATGGTTGGGAATGAGTCACACATTAGCTAATTAAGGAAATGATCACGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCTTGCAAAGCTATGAGAGATTATGCTCAAAGTGGATAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATGGTATCAGAACCATGCTTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTCAAATAAAGGGTGTACTTTGTTCAAAGGCTCCAAAGAATGAGTTGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGCCTCATGGGAGGCTCTATGGTGTACTTTATTTTAGGGGAGGATTGTTGGGAAGGAGTCGCGCATTGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTTGTATGAGGTATTTTGGGGAAACCAAAAGCAAAGCCATGAAAGCTTATGTTCAAAGTAGACAATATCATACTGTTGTGGAAATCCGTGATTCCTAACATGATATCAGAGTCATGTCCATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCTTTAAAGATACAGTCAAAAGTGACTCAAGTGTAATTTGTTCGAGATCTCCAGAGAAGGAGTAGAGCCTTGATTTAGGGGAGACTATTCGAGGAAGGTTTTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAGGAGTCTCACATCGGCTAATTAAGAGGTTGATCATGGGTTTATGAGTAAATGTTCAAAGTGGACAATATCATACTATTGTGGAGGTATGTAGCATGAATATGATAGGAAAATTTAGTAGCAAAAAAGATTGATTTTCTAGCGAGAGAACTTTGGCTTGAATTACATTGTTGGACAATTGACATGAACCAATTACTAATGGAAGCATTGCACAATTGTTCCTAGGACTCATAAAAGAAAGAAATGGGCTGTGGTCTTGGAGTTTTTGCTAAAGCTAATGATCTATTTGAAAGTTCTCTTTGGATTATCTTGTCATCTGCTTCATGGAAGGCTTCTTCCATCACTACGTGCATTGAGCATTGACCAACAAAGTTAAGTTTTGGTAATGGAAACAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGTATTAAGATATGATATAATAGCACCAGATACTAAGGTCTGAATAAATTGTGTACCATTTCTGTGAAGGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

mRNA sequence

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

Coding sequence (CDS)

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA
Homology
[Close]
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKP+TFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQR  ++HKL+QLREER+M+PETFASLVSA LYEK
Sbjct: 63 LYQRFAFRHKLYQLREERNMRPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: I1GVE5_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon GN=BRADI_1g30440 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: I1GVE6_BRADI (Proteasome subunit beta type OS=Brachypodium distachyon PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: A0A067GYK4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: V5IV06_HEVBR (Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match: A0A067GLE8_CITSI (Proteasome subunit beta type OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TAIR10
Match: AT1G77440.1 (AT1G77440.1 20S proteasome beta subunit C2)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. TAIR10
Match: AT1G21720.1 (AT1G21720.1 proteasome beta subunit C1)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|659133863|ref|XP_008466929.1| (PREDICTED: proteasome subunit beta type-3-like, partial [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS 61
          LYQRLVYQHKL+QLREERDMKPETFASLVS RLYEK + +
Sbjct: 56 LYQRLVYQHKLYQLREERDMKPETFASLVSTRLYEKRLDN 95

[Close]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|944058094|gb|KQJ93684.1| (hypothetical protein BRADI_3g06140, partial [Brachypodium distachyon])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
           LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 117 LYQRLVFKHKLYQLREERDMKPETFASLVSALLYEK 152

[Close]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|802636879|ref|XP_012078289.1| (PREDICTED: proteasome subunit beta type-3-A [Jatropha curcas])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|670416147|ref|XP_008649041.1| (PREDICTED: proteasome subunit beta type-3 [Zea mays])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

[Close]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match: gi|514708971|ref|XP_004951671.1| (PREDICTED: proteasome subunit beta type-3 [Setaria italica])

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK 98

The following BLAST results are available for this feature:
BLAST of CmoCh04G024940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSB3A_ARATH7.4e-1088.89Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2[more]
PSB3B_ARATH7.4e-1088.89Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1[more]
PSB3_ORYSJ1.3e-0986.11Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1[more]
PSB3_PICMA4.0e-0877.78Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1[more]
BLAST of CmoCh04G024940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
I1GVE5_BRADI6.3e-0888.89Proteasome subunit beta type OS=Brachypodium distachyon GN=BRADI_1g30440 PE=3 SV... [more]
I1GVE6_BRADI6.3e-0888.89Proteasome subunit beta type OS=Brachypodium distachyon PE=3 SV=1[more]
A0A067GYK4_CITSI6.3e-0888.89Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1[more]
V5IV06_HEVBR6.3e-0888.89Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC1 PE=2 SV=1[more]
A0A067GLE8_CITSI6.3e-0888.89Proteasome subunit beta type OS=Citrus sinensis GN=CISIN_1g028737mg PE=3 SV=1[more]
BLAST of CmoCh04G024940.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77440.14.1e-1188.89 20S proteasome beta subunit C2[more]
AT1G21720.14.1e-1188.89 proteasome beta subunit C1[more]
BLAST of CmoCh04G024940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133863|ref|XP_008466929.1|2.8e-0985.00PREDICTED: proteasome subunit beta type-3-like, partial [Cucumis melo][more]
gi|944058094|gb|KQJ93684.1|9.0e-0888.89hypothetical protein BRADI_3g06140, partial [Brachypodium distachyon][more]
gi|802636879|ref|XP_012078289.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3-A [Jatropha curcas][more]
gi|670416147|ref|XP_008649041.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3 [Zea mays][more]
gi|514708971|ref|XP_004951671.1|9.0e-0888.89PREDICTED: proteasome subunit beta type-3 [Setaria italica][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005839 proteasome core complex
molecular_function GO:0004298 threonine-type endopeptidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G024940CmoCh04G024940gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G024940.1CmoCh04G024940.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G024940.1.CDS.4CmoCh04G024940.1.CDS.4CDS
CmoCh04G024940.1.CDS.3CmoCh04G024940.1.CDS.3CDS
CmoCh04G024940.1.CDS.2CmoCh04G024940.1.CDS.2CDS
CmoCh04G024940.1.CDS.1CmoCh04G024940.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G024940.1.exon.4CmoCh04G024940.1.exon.4exon
CmoCh04G024940.1.exon.3CmoCh04G024940.1.exon.3exon
CmoCh04G024940.1.exon.2CmoCh04G024940.1.exon.2exon
CmoCh04G024940.1.exon.1CmoCh04G024940.1.exon.1exon