CmoCh02G005540.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005540.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Red chlorophyll catabolite reductase
Location	Cmo_Chr02 : 3139046 .. 3140950 (+)
Sequence length	1833

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGGTAACTTTCTTTTGGTTGTAATTTAATTTTTTTTAAAAAAATTAAATTGTTCCAACTTTCTCGGAATTTCAGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGATTTCGAGATATTAAATGTTTAGCGATTGTATTTAAGGTCTAAGCGAGTTACAATGTGATTAGCTCTATCTGAAATTATAAGGTGATAGGTGACAAATGAAAGTACGCACACATTTGTAACGCTGGTTTTGGTGTGTATTGTCAAATATGTAACGTCGAGACATTAGGAAGTAACGACGTATTGTGGCATGCTGATTGTTATCGATTCTTAAAGAATCATGTTTTCTCTAGTTATGGAACACCATGCACTTTAACGAGTGACAAGGGCACTTCTTCTCTCTTGTTTTTCGTATTCTTCATCAAAATCAAGTATGTGAGTTATGTGAGTTATGTGATCTTAAGAATTGGTATCAAAGTTTGGAGAGATTTACCACGATATGTGAAGATGGAAAGCTTAAAGATCGAAATCGAGAACTTTGATAGATATGATTGCGGTTTCTGCAAGATCAGATTGAAGTTTATTTGTACTAGAGAGATCTTCAAGAACCATTGTCCGAGGTGAAGTCGGATTCCATGACCATGGAGGAGCAAAAGCTCAAGGATTGAAGGCTCTAGGGTTTATTCGGTTAATGTTGACAAAAAAATGTGGCAATCAACATCGTCAAGGAGAAGACAACGTCGGATCTGTTTGAATGCGTTGTCAAATATGTATGAAAAGTCATCGACTATGAACAAGGTATAGTCGATGCGTAGACTATTCAATTTACAGATGTCTCAATGTGGATATGTTGTAAATCAAATAAAAGAATTCAATATGATTGTAAAATCGATAGAGTTACGCGGAAATTAATTTGGAAGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCTGTATCTTGGGATACTATTCTTGTGCTTTCTTTTAACCAACG

mRNA sequence

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGATTTCGAGATATTAAATGTTTAGCGATTGTATTTAAGGTCTAAGCGAGTTACAATGTGATTAGCTCTATCTGAAATTATAAGGTGATAGGTGACAAATGAAAGTACGCACACATTTGTAACGCTGGTTTTGGTGTGTATTGTCAAATATGTAACGTCGAGACATTAGGAAGTAACGACGTATTGTGGCATGCTGATTGTTATCGATTCTTAAAGAATCATGTTTTCTCTAGTTATGGAACACCATGCACTTTAACGAGTGACAAGGGCACTTCTTCTCTCTTGTTTTTCGTATTCTTCATCAAAATCAAGTATGTGAGTTATGTGAGTTATGTGATCTTAAGAATTGGTATCAAAGTTTGGAGAGATTTACCACGATATGTGAAGATGGAAAGCTTAAAGATCGAAATCGAGAACTTTGATAGATATGATTGCGGTTTCTGCAAGATCAGATTGAAGTTTATTTGTACTAGAGAGATCTTCAAGAACCATTGTCCGAGGTGAAGTCGGATTCCATGACCATGGAGGAGCAAAAGCTCAAGGATTGAAGGCTCTAGGGTTTATTCGGTTAATGTTGACAAAAAAATGTGGCAATCAACATCGTCAAGGAGAAGACAACGTCGGATCTGTTTGAATGCGTTGTCAAATATGTATGAAAAGTCATCGACTATGAACAAGGTATAGTCGATGCGTAGACTATTCAATTTACAGATGTCTCAATGTGGATATGTTGTAAATCAAATAAAAGAATTCAATATGATTGTAAAATCGATAGAGTTACGCGGAAATTAATTTGGAAGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCTGTATCTTGGGATACTATTCTTGTGCTTTCTTTTAACCAACG

Coding sequence (CDS)

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGA

Homology

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BLAST of CmoCh02G005540.1 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-56
Identity = 113/268 (42.16%), Postives = 168/268 (62.69%), Query Frame = 1


Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSAL 109
           K MEFP+++   + LMVDL+  V++ +   LLP  +P DV  + N  G+++ +L IRS  
Sbjct: 51  KFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGD 110

Query: 110 PPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLI 169
             SPIDF+I SW+H K P G + NIT+I+G+L ++   P+F  EL+Q S   L+  LDL 
Sbjct: 111 KSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLP 170

Query: 170 PRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCE 229
            R D+VL+PDYL  +Y++T L+ +R+ L  +PEV+PY S SLF R   S T  ++ +  E
Sbjct: 171 HRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE 230

Query: 230 ESESGRVEEIIREEIGPISKEVLRIWMELCSNGGRE--IEDGNERSLLEKRDLMIKKKAI 289
           E +  ++EEI+R+ + P +KEVL +W+E C     E  +    ER  LE+RD   ++K+I
Sbjct: 231 EED--KLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 290

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           E DL    P  FGEEV+ RV+  I+ AF
Sbjct: 291 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

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BLAST of CmoCh02G005540.1 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-42
Identity = 81/202 (40.10%), Postives = 131/202 (64.85%), Query Frame = 1


Query: 114 IDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVD 173
           IDFM+ S LH K P+G A +IT++   L  + D PHF  E +Q SPT ++  LDL+PR D
Sbjct: 1   IDFMLQSSLHCKVPNG-AIDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 60

Query: 174 IVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESES 233
           + LHP+Y+  +YE+TE++K R+ ++ +P+  PY S SLF R   S T +  ++ C +   
Sbjct: 61  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTIDCGKGGE 120

Query: 234 GRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 293
           G +EEI+   +  + K +L+IW++ C++   E+E+G ER ++ KRD  ++ K+IE+DL+ 
Sbjct: 121 GTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEG-EREIMVKRDRTVRSKSIEVDLTA 180

Query: 294 TMPLQFGEEVAERVLRVIRSAF 316
            +P  FG +V+ R++  IR AF
Sbjct: 181 NLPRMFGPDVSGRIIAEIRKAF 200

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BLAST of CmoCh02G005540.1 vs. TrEMBL
Match: Q1ELT6_CITLA (Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=2 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 1.6e-136
Identity = 256/317 (80.76%), Postives = 281/317 (88.64%), Query Frame = 1


Query: 8   LVPRACYC--LPPLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKLMEFPHLTAAH 67
           LV RACY   LPPLRFQ  ++  +R+V+KA LPS+      G G   SKLMEFPHLTAAH
Sbjct: 1   LVSRACYFVPLPPLRFQ--TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAH 60

Query: 68  RDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASW 127
           RDLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ GTSQGTLLIRSAL  SPIDFMIASW
Sbjct: 61  RDLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASW 120

Query: 128 LHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYL 187
           LHL+QP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DIVL PDYL
Sbjct: 121 LHLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYL 180

Query: 188 TTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIR 247
            T+YEET LEK+R++L ++PEVSPYFSSSL+FRKVVSSTGILVSVKCEES+S RVEEI+R
Sbjct: 181 VTYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVR 240

Query: 248 EEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGE 307
           EEIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGE
Sbjct: 241 EEIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGE 300

Query: 308 EVAERVLRVIRSAFKTA 319
           EVA RVL+VIRSAFKTA
Sbjct: 301 EVANRVLQVIRSAFKTA 314

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BLAST of CmoCh02G005540.1 vs. TrEMBL
Match: A0A0A0LLX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 2.8e-130
Identity = 248/325 (76.31%), Postives = 283/325 (87.08%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP--PLRFQGGSRGRTRQVIKAELPSAA-MGSG---RPASKLMEF 60
           M L  + L+  A   +P  PLRFQ  ++  ++ V+KA   S+  M SG    P SKLMEF
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQ--AKRSSQPVLKAAFQSSEKMDSGGQVAPVSKLMEF 60

Query: 61  PHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPI 120
           PHLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSALP SPI
Sbjct: 61  PHLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPI 120

Query: 121 DFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDI 180
           DFMIASWLHLKQP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI
Sbjct: 121 DFMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDI 180

Query: 181 VLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESG 240
           +L PDYLTT+YE+T LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKC+ESES 
Sbjct: 181 ILRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESK 240

Query: 241 RVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 300
           RVEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSK
Sbjct: 241 RVEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSK 300

Query: 301 TMPLQFGEEVAERVLRVIRSAFKTA 319
           TMPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 TMPLQFGEEVANRVLQVIRSAFKTA 322

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BLAST of CmoCh02G005540.1 vs. TrEMBL
Match: C6L812_CUCSA (Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=CsRCCR PE=2 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.1e-95
Identity = 178/210 (84.76%), Postives = 196/210 (93.33%), Query Frame = 1


Query: 84  TVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKT 143
           TVP DVEYY+NQ GTSQGTLLIRSALP SPIDFMIASWLHLKQP GGAFNITNIAGYLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 144 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEV 203
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+L PDYLTT+YE+T LEK R+RL ++PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 204 SPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 263
           SPYFSSSL+FRKVVSSTGILV VKC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 264 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 293
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

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BLAST of CmoCh02G005540.1 vs. TrEMBL
Match: B9HH31_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2)

HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88
Identity = 169/272 (62.13%), Postives = 207/272 (76.10%), Query Frame = 1


Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST--VPSDVEYYQNQPGTSQGTLLIRS 109
           +LMEFPHL A H+DLMV LI AVD  +  HLLPS+  VP D EYYQNQ G SQG+L I  
Sbjct: 51  RLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSASVPPDAEYYQNQSGASQGSLCINR 110

Query: 110 ALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLD 169
            +  S IDF++ SWLHL  P+GGA +ITNI GYLK++ D PHFQFELVQCSPT+ IFFLD
Sbjct: 111 GVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKSSTDAPHFQFELVQCSPTYFIFFLD 170

Query: 170 LIPRVDIVLHPDYLTTFYEETELEKYRRRLDS-VPEVSPYFSSSLFFRKVVSSTGILVSV 229
           LIPR D+VLHPDYL TFYE+++LE  R++LD+ V E  PYFSSSL+FR VVS TGILVS+
Sbjct: 171 LIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLEAKPYFSSSLYFRNVVSPTGILVSI 230

Query: 230 KCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKK 289
            CE+   + R EEIIR+ I PI+ EVL +WM+ C   GG  I + NER  LEKRD MIK 
Sbjct: 231 TCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTAIIEENERDHLEKRDRMIKS 290

Query: 290 KAIEMDLSKTMPLQFGEEVAERVLRVIRSAFK 317
           +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 291 RAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

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BLAST of CmoCh02G005540.1 vs. TrEMBL
Match: V4SF05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 165/268 (61.57%), Postives = 203/268 (75.75%), Query Frame = 1


Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST-VPSDVEYYQNQPGTSQGTLLIRSA 109
           K MEFPHLTAAH+DLMV LI A++  +  HLL S+ VP DVE+YQN  GTSQG+L IR  
Sbjct: 10  KPMEFPHLTAAHKDLMVSLISALETRLDSHLLASSAVPPDVEFYQNDQGTSQGSLHIRRG 69

Query: 110 LPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDL 169
           LP S IDF++ASWLHLK P G A NITN+  YLK++ D+PHFQFELVQCSPT+ I FLD+
Sbjct: 70  LPSSHIDFVLASWLHLKVPTGSAMNITNLQAYLKSSTDVPHFQFELVQCSPTYFILFLDV 129

Query: 170 IPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKC 229
            PR D+VL+P+YL TFYEE +LE  R+RL+ VPE  PY SSSL+FR VVS TGILVS+KC
Sbjct: 130 TPRKDLVLYPNYLKTFYEEAQLETLRQRLEQVPETKPYLSSSLYFRGVVSPTGILVSIKC 189

Query: 230 EE-SESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAI 289
           EE   + R EEIIRE + PI+ +V+ IW+E   +G        ER+ LEKRDL++K +AI
Sbjct: 190 EEVGGTDRCEEIIREHVSPIAHDVMVIWLEKYFSGA--TVGVTERAELEKRDLLVKTRAI 249

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           EMDLS ++PLQFG+EVA RVL VI+  F
Sbjct: 250 EMDLSSSLPLQFGQEVANRVLDVIKGVF 275

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BLAST of CmoCh02G005540.1 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2))

HSP 1 Score: 221.9 bits (564), Expect = 5.8e-58
Identity = 113/268 (42.16%), Postives = 168/268 (62.69%), Query Frame = 1


Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSAL 109
           K MEFP+++   + LMVDL+  V++ +   LLP  +P DV  + N  G+++ +L IRS  
Sbjct: 51  KFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGD 110

Query: 110 PPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLI 169
             SPIDF+I SW+H K P G + NIT+I+G+L ++   P+F  EL+Q S   L+  LDL 
Sbjct: 111 KSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLP 170

Query: 170 PRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCE 229
            R D+VL+PDYL  +Y++T L+ +R+ L  +PEV+PY S SLF R   S T  ++ +  E
Sbjct: 171 HRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE 230

Query: 230 ESESGRVEEIIREEIGPISKEVLRIWMELCSNGGRE--IEDGNERSLLEKRDLMIKKKAI 289
           E +  ++EEI+R+ + P +KEVL +W+E C     E  +    ER  LE+RD   ++K+I
Sbjct: 231 EED--KLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 290

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           E DL    P  FGEEV+ RV+  I+ AF
Sbjct: 291 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

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BLAST of CmoCh02G005540.1 vs. NCBI nr
Match: gi|106880172|emb|CAJ80768.1| (red chlorophyll catabolite reductase [Citrullus lanatus])

HSP 1 Score: 493.8 bits (1270), Expect = 2.2e-136
Identity = 256/317 (80.76%), Postives = 281/317 (88.64%), Query Frame = 1


Query: 8   LVPRACYC--LPPLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKLMEFPHLTAAH 67
           LV RACY   LPPLRFQ  ++  +R+V+KA LPS+      G G   SKLMEFPHLTAAH
Sbjct: 1   LVSRACYFVPLPPLRFQ--TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAH 60

Query: 68  RDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASW 127
           RDLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ GTSQGTLLIRSAL  SPIDFMIASW
Sbjct: 61  RDLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASW 120

Query: 128 LHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYL 187
           LHL+QP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DIVL PDYL
Sbjct: 121 LHLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYL 180

Query: 188 TTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIR 247
            T+YEET LEK+R++L ++PEVSPYFSSSL+FRKVVSSTGILVSVKCEES+S RVEEI+R
Sbjct: 181 VTYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVR 240

Query: 248 EEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGE 307
           EEIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGE
Sbjct: 241 EEIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGE 300

Query: 308 EVAERVLRVIRSAFKTA 319
           EVA RVL+VIRSAFKTA
Sbjct: 301 EVANRVLQVIRSAFKTA 314

[Close]

BLAST of CmoCh02G005540.1 vs. NCBI nr
Match: gi|449460580|ref|XP_004148023.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 248/325 (76.31%), Postives = 283/325 (87.08%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP--PLRFQGGSRGRTRQVIKAELPSAA-MGSG---RPASKLMEF 60
           M L  + L+  A   +P  PLRFQ  ++  ++ V+KA   S+  M SG    P SKLMEF
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQ--AKRSSQPVLKAAFQSSEKMDSGGQVAPVSKLMEF 60

Query: 61  PHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPI 120
           PHLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSALP SPI
Sbjct: 61  PHLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPI 120

Query: 121 DFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDI 180
           DFMIASWLHLKQP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI
Sbjct: 121 DFMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDI 180

Query: 181 VLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESG 240
           +L PDYLTT+YE+T LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKC+ESES 
Sbjct: 181 ILRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESK 240

Query: 241 RVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 300
           RVEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSK
Sbjct: 241 RVEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSK 300

Query: 301 TMPLQFGEEVAERVLRVIRSAFKTA 319
           TMPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 TMPLQFGEEVANRVLQVIRSAFKTA 322

[Close]

BLAST of CmoCh02G005540.1 vs. NCBI nr
Match: gi|659116003|ref|XP_008457850.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo])

HSP 1 Score: 471.9 bits (1213), Expect = 9.1e-130
Identity = 242/327 (74.01%), Postives = 279/327 (85.32%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP-----PLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKL 60
           M L    L+  AC  +P     PLRFQ  ++  +++V+KA L S+      G   P SKL
Sbjct: 1   MGLLAANLISSACCFVPLPPPSPLRFQ--AKRSSQRVLKAALTSSEKMDSGGQAAPVSKL 60

Query: 61  MEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPP 120
           MEFPHLTAAH DLM+ LIQ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIR  +P 
Sbjct: 61  MEFPHLTAAHTDLMLYLIQTVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRHGIPS 120

Query: 121 SPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPR 180
           SPIDFMIASWLHLKQP GGAF+ITNIAGY+K +NDIPHFQFELVQCSPTFLIFFLDL+PR
Sbjct: 121 SPIDFMIASWLHLKQPQGGAFDITNIAGYMKPSNDIPHFQFELVQCSPTFLIFFLDLLPR 180

Query: 181 VDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEES 240
            DI+LHPDYLTT+YEET LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKCEES
Sbjct: 181 TDIILHPDYLTTYYEETGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCEES 240

Query: 241 ESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDL 300
           ES RVEEI+REEIGPISKEV+RIWMELC +GGRE+E+ +ERSL+EKRDLMIK+KAIEMDL
Sbjct: 241 ESKRVEEIVREEIGPISKEVMRIWMELCLSGGRELEE-DERSLMEKRDLMIKRKAIEMDL 300

Query: 301 SKTMPLQFGEEVAERVLRVIRSAFKTA 319
           SK+MPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 SKSMPLQFGEEVANRVLQVIRSAFKTA 324

[Close]

BLAST of CmoCh02G005540.1 vs. NCBI nr
Match: gi|253787599|dbj|BAH84859.1| (putative red chlorophyll catabolite reductase, partial [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 7.3e-95
Identity = 178/210 (84.76%), Postives = 196/210 (93.33%), Query Frame = 1


Query: 84  TVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKT 143
           TVP DVEYY+NQ GTSQGTLLIRSALP SPIDFMIASWLHLKQP GGAFNITNIAGYLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 144 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEV 203
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+L PDYLTT+YE+T LEK R+RL ++PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 204 SPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 263
           SPYFSSSL+FRKVVSSTGILV VKC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 264 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 293
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

[Close]

BLAST of CmoCh02G005540.1 vs. NCBI nr
Match: gi|566180698|ref|XP_002310112.2| (hypothetical protein POPTR_0007s11040g [Populus trichocarpa])

HSP 1 Score: 332.8 bits (852), Expect = 6.6e-88
Identity = 169/272 (62.13%), Postives = 207/272 (76.10%), Query Frame = 1


Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST--VPSDVEYYQNQPGTSQGTLLIRS 109
           +LMEFPHL A H+DLMV LI AVD  +  HLLPS+  VP D EYYQNQ G SQG+L I  
Sbjct: 51  RLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSASVPPDAEYYQNQSGASQGSLCINR 110

Query: 110 ALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLD 169
            +  S IDF++ SWLHL  P+GGA +ITNI GYLK++ D PHFQFELVQCSPT+ IFFLD
Sbjct: 111 GVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKSSTDAPHFQFELVQCSPTYFIFFLD 170

Query: 170 LIPRVDIVLHPDYLTTFYEETELEKYRRRLDS-VPEVSPYFSSSLFFRKVVSSTGILVSV 229
           LIPR D+VLHPDYL TFYE+++LE  R++LD+ V E  PYFSSSL+FR VVS TGILVS+
Sbjct: 171 LIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLEAKPYFSSSLYFRNVVSPTGILVSI 230

Query: 230 KCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKK 289
            CE+   + R EEIIR+ I PI+ EVL +WM+ C   GG  I + NER  LEKRD MIK 
Sbjct: 231 TCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTAIIEENERDHLEKRDRMIKS 290

Query: 290 KAIEMDLSKTMPLQFGEEVAERVLRVIRSAFK 317
           +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 291 RAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

The following BLAST results are available for this feature:

BLAST of CmoCh02G005540.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCCR_ARATH	1.0e-56	42.16	Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=R...	[more]
RCCR_HORVU	3.2e-42	40.10	Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 ...	[more]

BLAST of CmoCh02G005540.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q1ELT6_CITLA	1.6e-136	80.76	Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=...	[more]
A0A0A0LLX2_CUCSA	2.8e-130	76.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1	[more]
C6L812_CUCSA	5.1e-95	84.76	Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=C...	[more]
B9HH31_POPTR	4.6e-88	62.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2	[more]
V4SF05_9ROSI	4.7e-85	61.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1	[more]

BLAST of CmoCh02G005540.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37000.1	5.8e-58	42.16	accelerated cell death 2 (ACD2)	[more]

BLAST of CmoCh02G005540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|106880172\|emb\|CAJ80768.1\|	2.2e-136	80.76	red chlorophyll catabolite reductase [Citrullus lanatus]	[more]
gi\|449460580\|ref\|XP_004148023.1\|	4.1e-130	76.31	PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus]	[more]
gi\|659116003\|ref\|XP_008457850.1\|	9.1e-130	74.01	PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo]	[more]
gi\|253787599\|dbj\|BAH84859.1\|	7.3e-95	84.76	putative red chlorophyll catabolite reductase, partial [Cucumis sativus]	[more]
gi\|566180698\|ref\|XP_002310112.2\|	6.6e-88	62.13	hypothetical protein POPTR_0007s11040g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009439	RCC_reductase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006725	cellular aromatic compound metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0051186	cofactor metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0042440	pigment metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G005540	CmoCh02G005540	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005540.1	CmoCh02G005540.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005540.1.exon.2	CmoCh02G005540.1.exon.2	exon
CmoCh02G005540.1.exon.1	CmoCh02G005540.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005540.1.CDS.1	CmoCh02G005540.1.CDS.1	CDS
CmoCh02G005540.1.CDS.2	CmoCh02G005540.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005540.1.three_prime_UTR.1	CmoCh02G005540.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009439	Red chlorophyll catabolite reductase	PFAM	PF06405	RCC_reductase	coord: 60..312 score: 7.2E
None	No IPR available	PANTHER	PTHR34685	FAMILY NOT NAMED	coord: 25..318 score: 1.5E
None	No IPR available	PANTHER	PTHR34685:SF2	RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTIC	coord: 25..318 score: 1.5E