CmoCh02G005540 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G005540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRed chlorophyll catabolite reductase
LocationCmo_Chr02 : 3139046 .. 3140950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGGTAACTTTCTTTTGGTTGTAATTTAATTTTTTTTAAAAAAATTAAATTGTTCCAACTTTCTCGGAATTTCAGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGATTTCGAGATATTAAATGTTTAGCGATTGTATTTAAGGTCTAAGCGAGTTACAATGTGATTAGCTCTATCTGAAATTATAAGGTGATAGGTGACAAATGAAAGTACGCACACATTTGTAACGCTGGTTTTGGTGTGTATTGTCAAATATGTAACGTCGAGACATTAGGAAGTAACGACGTATTGTGGCATGCTGATTGTTATCGATTCTTAAAGAATCATGTTTTCTCTAGTTATGGAACACCATGCACTTTAACGAGTGACAAGGGCACTTCTTCTCTCTTGTTTTTCGTATTCTTCATCAAAATCAAGTATGTGAGTTATGTGAGTTATGTGATCTTAAGAATTGGTATCAAAGTTTGGAGAGATTTACCACGATATGTGAAGATGGAAAGCTTAAAGATCGAAATCGAGAACTTTGATAGATATGATTGCGGTTTCTGCAAGATCAGATTGAAGTTTATTTGTACTAGAGAGATCTTCAAGAACCATTGTCCGAGGTGAAGTCGGATTCCATGACCATGGAGGAGCAAAAGCTCAAGGATTGAAGGCTCTAGGGTTTATTCGGTTAATGTTGACAAAAAAATGTGGCAATCAACATCGTCAAGGAGAAGACAACGTCGGATCTGTTTGAATGCGTTGTCAAATATGTATGAAAAGTCATCGACTATGAACAAGGTATAGTCGATGCGTAGACTATTCAATTTACAGATGTCTCAATGTGGATATGTTGTAAATCAAATAAAAGAATTCAATATGATTGTAAAATCGATAGAGTTACGCGGAAATTAATTTGGAAGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCTGTATCTTGGGATACTATTCTTGTGCTTTCTTTTAACCAACG

mRNA sequence

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGATTTCGAGATATTAAATGTTTAGCGATTGTATTTAAGGTCTAAGCGAGTTACAATGTGATTAGCTCTATCTGAAATTATAAGGTGATAGGTGACAAATGAAAGTACGCACACATTTGTAACGCTGGTTTTGGTGTGTATTGTCAAATATGTAACGTCGAGACATTAGGAAGTAACGACGTATTGTGGCATGCTGATTGTTATCGATTCTTAAAGAATCATGTTTTCTCTAGTTATGGAACACCATGCACTTTAACGAGTGACAAGGGCACTTCTTCTCTCTTGTTTTTCGTATTCTTCATCAAAATCAAGTATGTGAGTTATGTGAGTTATGTGATCTTAAGAATTGGTATCAAAGTTTGGAGAGATTTACCACGATATGTGAAGATGGAAAGCTTAAAGATCGAAATCGAGAACTTTGATAGATATGATTGCGGTTTCTGCAAGATCAGATTGAAGTTTATTTGTACTAGAGAGATCTTCAAGAACCATTGTCCGAGGTGAAGTCGGATTCCATGACCATGGAGGAGCAAAAGCTCAAGGATTGAAGGCTCTAGGGTTTATTCGGTTAATGTTGACAAAAAAATGTGGCAATCAACATCGTCAAGGAGAAGACAACGTCGGATCTGTTTGAATGCGTTGTCAAATATGTATGAAAAGTCATCGACTATGAACAAGGTATAGTCGATGCGTAGACTATTCAATTTACAGATGTCTCAATGTGGATATGTTGTAAATCAAATAAAAGAATTCAATATGATTGTAAAATCGATAGAGTTACGCGGAAATTAATTTGGAAGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCTGTATCTTGGGATACTATTCTTGTGCTTTCTTTTAACCAACG

Coding sequence (CDS)

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATTGCGTTTCCAAGGAGGAAGTAGAGGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCCGCGGCGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCGGATGTAGAGTATTATCAGAACCAACCCGGCACTTCACAGGGCACTCTCCTCATCCGATCTGCCCTTCCACCGTCGCCGATTGATTTCATGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCGTTCAACATAACCAACATCGCCGGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGTTAGTTCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTCGATATCGTCCTCCATCCCGACTACCTCACCACTTTCTACGAGGAAACTGAGCTCGAGAAGTATCGACGCCGACTCGACAGCGTGCCGGAAGTAAGCCCGTACTTCTCGTCGTCGCTCTTCTTTCGAAAAGTTGTTTCGTCGACCGGAATTCTAGTGAGTGTGAAGTGTGAGGAGAGCGAATCGGGGCGTGTGGAAGAGATTATCCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGTGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGACCTTATGATTAAGAAGAAGGCAATCGAAATGGATCTAAGCAAAACGATGCCGTTGCAATTTGGAGAAGAAGTTGCTGAGAGAGTTCTTCGAGTTATTAGAAGTGCTTTCAAAACGGCTTGA
Homology
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BLAST of CmoCh02G005540 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-56
Identity = 113/268 (42.16%), Postives = 168/268 (62.69%), Query Frame = 1 

Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSAL 109
           K MEFP+++   + LMVDL+  V++ +   LLP  +P DV  + N  G+++ +L IRS  
Sbjct: 51  KFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGD 110

Query: 110 PPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLI 169
             SPIDF+I SW+H K P G + NIT+I+G+L ++   P+F  EL+Q S   L+  LDL 
Sbjct: 111 KSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLP 170

Query: 170 PRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCE 229
            R D+VL+PDYL  +Y++T L+ +R+ L  +PEV+PY S SLF R   S T  ++ +  E
Sbjct: 171 HRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE 230

Query: 230 ESESGRVEEIIREEIGPISKEVLRIWMELCSNGGRE--IEDGNERSLLEKRDLMIKKKAI 289
           E +  ++EEI+R+ + P +KEVL +W+E C     E  +    ER  LE+RD   ++K+I
Sbjct: 231 EED--KLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 290

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           E DL    P  FGEEV+ RV+  I+ AF
Sbjct: 291 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

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BLAST of CmoCh02G005540 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-42
Identity = 81/202 (40.10%), Postives = 131/202 (64.85%), Query Frame = 1 

Query: 114 IDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVD 173
           IDFM+ S LH K P+G A +IT++   L  + D PHF  E +Q SPT ++  LDL+PR D
Sbjct: 1   IDFMLQSSLHCKVPNG-AIDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 60

Query: 174 IVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESES 233
           + LHP+Y+  +YE+TE++K R+ ++ +P+  PY S SLF R   S T +  ++ C +   
Sbjct: 61  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTIDCGKGGE 120

Query: 234 GRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 293
           G +EEI+   +  + K +L+IW++ C++   E+E+G ER ++ KRD  ++ K+IE+DL+ 
Sbjct: 121 GTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEG-EREIMVKRDRTVRSKSIEVDLTA 180

Query: 294 TMPLQFGEEVAERVLRVIRSAF 316
            +P  FG +V+ R++  IR AF
Sbjct: 181 NLPRMFGPDVSGRIIAEIRKAF 200

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BLAST of CmoCh02G005540 vs. TrEMBL
Match: Q1ELT6_CITLA (Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=2 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 1.6e-136
Identity = 256/317 (80.76%), Postives = 281/317 (88.64%), Query Frame = 1 

Query: 8   LVPRACYC--LPPLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKLMEFPHLTAAH 67
           LV RACY   LPPLRFQ  ++  +R+V+KA LPS+      G G   SKLMEFPHLTAAH
Sbjct: 1   LVSRACYFVPLPPLRFQ--TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAH 60

Query: 68  RDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASW 127
           RDLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ GTSQGTLLIRSAL  SPIDFMIASW
Sbjct: 61  RDLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASW 120

Query: 128 LHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYL 187
           LHL+QP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DIVL PDYL
Sbjct: 121 LHLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYL 180

Query: 188 TTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIR 247
            T+YEET LEK+R++L ++PEVSPYFSSSL+FRKVVSSTGILVSVKCEES+S RVEEI+R
Sbjct: 181 VTYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVR 240

Query: 248 EEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGE 307
           EEIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGE
Sbjct: 241 EEIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGE 300

Query: 308 EVAERVLRVIRSAFKTA 319
           EVA RVL+VIRSAFKTA
Sbjct: 301 EVANRVLQVIRSAFKTA 314

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BLAST of CmoCh02G005540 vs. TrEMBL
Match: A0A0A0LLX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 2.8e-130
Identity = 248/325 (76.31%), Postives = 283/325 (87.08%), Query Frame = 1 

Query: 1   MALTTLTLVPRACYCLP--PLRFQGGSRGRTRQVIKAELPSAA-MGSG---RPASKLMEF 60
           M L  + L+  A   +P  PLRFQ  ++  ++ V+KA   S+  M SG    P SKLMEF
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQ--AKRSSQPVLKAAFQSSEKMDSGGQVAPVSKLMEF 60

Query: 61  PHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPI 120
           PHLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSALP SPI
Sbjct: 61  PHLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPI 120

Query: 121 DFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDI 180
           DFMIASWLHLKQP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI
Sbjct: 121 DFMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDI 180

Query: 181 VLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESG 240
           +L PDYLTT+YE+T LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKC+ESES 
Sbjct: 181 ILRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESK 240

Query: 241 RVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 300
           RVEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSK
Sbjct: 241 RVEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSK 300

Query: 301 TMPLQFGEEVAERVLRVIRSAFKTA 319
           TMPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 TMPLQFGEEVANRVLQVIRSAFKTA 322

[Close]
BLAST of CmoCh02G005540 vs. TrEMBL
Match: C6L812_CUCSA (Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=CsRCCR PE=2 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.1e-95
Identity = 178/210 (84.76%), Postives = 196/210 (93.33%), Query Frame = 1 

Query: 84  TVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKT 143
           TVP DVEYY+NQ GTSQGTLLIRSALP SPIDFMIASWLHLKQP GGAFNITNIAGYLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 144 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEV 203
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+L PDYLTT+YE+T LEK R+RL ++PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 204 SPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 263
           SPYFSSSL+FRKVVSSTGILV VKC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 264 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 293
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

[Close]
BLAST of CmoCh02G005540 vs. TrEMBL
Match: B9HH31_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2)

HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88
Identity = 169/272 (62.13%), Postives = 207/272 (76.10%), Query Frame = 1 

Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST--VPSDVEYYQNQPGTSQGTLLIRS 109
           +LMEFPHL A H+DLMV LI AVD  +  HLLPS+  VP D EYYQNQ G SQG+L I  
Sbjct: 51  RLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSASVPPDAEYYQNQSGASQGSLCINR 110

Query: 110 ALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLD 169
            +  S IDF++ SWLHL  P+GGA +ITNI GYLK++ D PHFQFELVQCSPT+ IFFLD
Sbjct: 111 GVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKSSTDAPHFQFELVQCSPTYFIFFLD 170

Query: 170 LIPRVDIVLHPDYLTTFYEETELEKYRRRLDS-VPEVSPYFSSSLFFRKVVSSTGILVSV 229
           LIPR D+VLHPDYL TFYE+++LE  R++LD+ V E  PYFSSSL+FR VVS TGILVS+
Sbjct: 171 LIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLEAKPYFSSSLYFRNVVSPTGILVSI 230

Query: 230 KCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKK 289
            CE+   + R EEIIR+ I PI+ EVL +WM+ C   GG  I + NER  LEKRD MIK 
Sbjct: 231 TCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTAIIEENERDHLEKRDRMIKS 290

Query: 290 KAIEMDLSKTMPLQFGEEVAERVLRVIRSAFK 317
           +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 291 RAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

[Close]
BLAST of CmoCh02G005540 vs. TrEMBL
Match: V4SF05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 165/268 (61.57%), Postives = 203/268 (75.75%), Query Frame = 1 

Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST-VPSDVEYYQNQPGTSQGTLLIRSA 109
           K MEFPHLTAAH+DLMV LI A++  +  HLL S+ VP DVE+YQN  GTSQG+L IR  
Sbjct: 10  KPMEFPHLTAAHKDLMVSLISALETRLDSHLLASSAVPPDVEFYQNDQGTSQGSLHIRRG 69

Query: 110 LPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDL 169
           LP S IDF++ASWLHLK P G A NITN+  YLK++ D+PHFQFELVQCSPT+ I FLD+
Sbjct: 70  LPSSHIDFVLASWLHLKVPTGSAMNITNLQAYLKSSTDVPHFQFELVQCSPTYFILFLDV 129

Query: 170 IPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKC 229
            PR D+VL+P+YL TFYEE +LE  R+RL+ VPE  PY SSSL+FR VVS TGILVS+KC
Sbjct: 130 TPRKDLVLYPNYLKTFYEEAQLETLRQRLEQVPETKPYLSSSLYFRGVVSPTGILVSIKC 189

Query: 230 EE-SESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAI 289
           EE   + R EEIIRE + PI+ +V+ IW+E   +G        ER+ LEKRDL++K +AI
Sbjct: 190 EEVGGTDRCEEIIREHVSPIAHDVMVIWLEKYFSGA--TVGVTERAELEKRDLLVKTRAI 249

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           EMDLS ++PLQFG+EVA RVL VI+  F
Sbjct: 250 EMDLSSSLPLQFGQEVANRVLDVIKGVF 275

[Close]
BLAST of CmoCh02G005540 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2))

HSP 1 Score: 221.9 bits (564), Expect = 5.8e-58
Identity = 113/268 (42.16%), Postives = 168/268 (62.69%), Query Frame = 1 

Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSAL 109
           K MEFP+++   + LMVDL+  V++ +   LLP  +P DV  + N  G+++ +L IRS  
Sbjct: 51  KFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGD 110

Query: 110 PPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLI 169
             SPIDF+I SW+H K P G + NIT+I+G+L ++   P+F  EL+Q S   L+  LDL 
Sbjct: 111 KSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLP 170

Query: 170 PRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCE 229
            R D+VL+PDYL  +Y++T L+ +R+ L  +PEV+PY S SLF R   S T  ++ +  E
Sbjct: 171 HRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE 230

Query: 230 ESESGRVEEIIREEIGPISKEVLRIWMELCSNGGRE--IEDGNERSLLEKRDLMIKKKAI 289
           E +  ++EEI+R+ + P +KEVL +W+E C     E  +    ER  LE+RD   ++K+I
Sbjct: 231 EED--KLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 290

Query: 290 EMDLSKTMPLQFGEEVAERVLRVIRSAF 316
           E DL    P  FGEEV+ RV+  I+ AF
Sbjct: 291 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

[Close]
BLAST of CmoCh02G005540 vs. NCBI nr
Match: gi|106880172|emb|CAJ80768.1| (red chlorophyll catabolite reductase [Citrullus lanatus])

HSP 1 Score: 493.8 bits (1270), Expect = 2.2e-136
Identity = 256/317 (80.76%), Postives = 281/317 (88.64%), Query Frame = 1 

Query: 8   LVPRACYC--LPPLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKLMEFPHLTAAH 67
           LV RACY   LPPLRFQ  ++  +R+V+KA LPS+      G G   SKLMEFPHLTAAH
Sbjct: 1   LVSRACYFVPLPPLRFQ--TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAH 60

Query: 68  RDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASW 127
           RDLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ GTSQGTLLIRSAL  SPIDFMIASW
Sbjct: 61  RDLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASW 120

Query: 128 LHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYL 187
           LHL+QP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DIVL PDYL
Sbjct: 121 LHLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYL 180

Query: 188 TTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIR 247
            T+YEET LEK+R++L ++PEVSPYFSSSL+FRKVVSSTGILVSVKCEES+S RVEEI+R
Sbjct: 181 VTYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVR 240

Query: 248 EEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGE 307
           EEIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGE
Sbjct: 241 EEIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGE 300

Query: 308 EVAERVLRVIRSAFKTA 319
           EVA RVL+VIRSAFKTA
Sbjct: 301 EVANRVLQVIRSAFKTA 314

[Close]
BLAST of CmoCh02G005540 vs. NCBI nr
Match: gi|449460580|ref|XP_004148023.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 248/325 (76.31%), Postives = 283/325 (87.08%), Query Frame = 1 

Query: 1   MALTTLTLVPRACYCLP--PLRFQGGSRGRTRQVIKAELPSAA-MGSG---RPASKLMEF 60
           M L  + L+  A   +P  PLRFQ  ++  ++ V+KA   S+  M SG    P SKLMEF
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQ--AKRSSQPVLKAAFQSSEKMDSGGQVAPVSKLMEF 60

Query: 61  PHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPPSPI 120
           PHLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSALP SPI
Sbjct: 61  PHLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPI 120

Query: 121 DFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDI 180
           DFMIASWLHLKQP GGAFNITNIAGYLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI
Sbjct: 121 DFMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDI 180

Query: 181 VLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEESESG 240
           +L PDYLTT+YE+T LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKC+ESES 
Sbjct: 181 ILRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESK 240

Query: 241 RVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSK 300
           RVEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSK
Sbjct: 241 RVEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSK 300

Query: 301 TMPLQFGEEVAERVLRVIRSAFKTA 319
           TMPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 TMPLQFGEEVANRVLQVIRSAFKTA 322

[Close]
BLAST of CmoCh02G005540 vs. NCBI nr
Match: gi|659116003|ref|XP_008457850.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo])

HSP 1 Score: 471.9 bits (1213), Expect = 9.1e-130
Identity = 242/327 (74.01%), Postives = 279/327 (85.32%), Query Frame = 1 

Query: 1   MALTTLTLVPRACYCLP-----PLRFQGGSRGRTRQVIKAELPSAAM----GSGRPASKL 60
           M L    L+  AC  +P     PLRFQ  ++  +++V+KA L S+      G   P SKL
Sbjct: 1   MGLLAANLISSACCFVPLPPPSPLRFQ--AKRSSQRVLKAALTSSEKMDSGGQAAPVSKL 60

Query: 61  MEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQPGTSQGTLLIRSALPP 120
           MEFPHLTAAH DLM+ LIQ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIR  +P 
Sbjct: 61  MEFPHLTAAHTDLMLYLIQTVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRHGIPS 120

Query: 121 SPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPR 180
           SPIDFMIASWLHLKQP GGAF+ITNIAGY+K +NDIPHFQFELVQCSPTFLIFFLDL+PR
Sbjct: 121 SPIDFMIASWLHLKQPQGGAFDITNIAGYMKPSNDIPHFQFELVQCSPTFLIFFLDLLPR 180

Query: 181 VDIVLHPDYLTTFYEETELEKYRRRLDSVPEVSPYFSSSLFFRKVVSSTGILVSVKCEES 240
            DI+LHPDYLTT+YEET LEK R+RL ++PEVSPYFSSSL+FRKVVSSTGILV VKCEES
Sbjct: 181 TDIILHPDYLTTYYEETGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCEES 240

Query: 241 ESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDL 300
           ES RVEEI+REEIGPISKEV+RIWMELC +GGRE+E+ +ERSL+EKRDLMIK+KAIEMDL
Sbjct: 241 ESKRVEEIVREEIGPISKEVMRIWMELCLSGGRELEE-DERSLMEKRDLMIKRKAIEMDL 300

Query: 301 SKTMPLQFGEEVAERVLRVIRSAFKTA 319
           SK+MPLQFGEEVA RVL+VIRSAFKTA
Sbjct: 301 SKSMPLQFGEEVANRVLQVIRSAFKTA 324

[Close]
BLAST of CmoCh02G005540 vs. NCBI nr
Match: gi|253787599|dbj|BAH84859.1| (putative red chlorophyll catabolite reductase, partial [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 7.3e-95
Identity = 178/210 (84.76%), Postives = 196/210 (93.33%), Query Frame = 1 

Query: 84  TVPSDVEYYQNQPGTSQGTLLIRSALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKT 143
           TVP DVEYY+NQ GTSQGTLLIRSALP SPIDFMIASWLHLKQP GGAFNITNIAGYLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 144 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIVLHPDYLTTFYEETELEKYRRRLDSVPEV 203
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+L PDYLTT+YE+T LEK R+RL ++PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 204 SPYFSSSLFFRKVVSSTGILVSVKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 263
           SPYFSSSL+FRKVVSSTGILV VKC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 264 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 293
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

[Close]
BLAST of CmoCh02G005540 vs. NCBI nr
Match: gi|566180698|ref|XP_002310112.2| (hypothetical protein POPTR_0007s11040g [Populus trichocarpa])

HSP 1 Score: 332.8 bits (852), Expect = 6.6e-88
Identity = 169/272 (62.13%), Postives = 207/272 (76.10%), Query Frame = 1 

Query: 50  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST--VPSDVEYYQNQPGTSQGTLLIRS 109
           +LMEFPHL A H+DLMV LI AVD  +  HLLPS+  VP D EYYQNQ G SQG+L I  
Sbjct: 51  RLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSASVPPDAEYYQNQSGASQGSLCINR 110

Query: 110 ALPPSPIDFMIASWLHLKQPHGGAFNITNIAGYLKTTNDIPHFQFELVQCSPTFLIFFLD 169
            +  S IDF++ SWLHL  P+GGA +ITNI GYLK++ D PHFQFELVQCSPT+ IFFLD
Sbjct: 111 GVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKSSTDAPHFQFELVQCSPTYFIFFLD 170

Query: 170 LIPRVDIVLHPDYLTTFYEETELEKYRRRLDS-VPEVSPYFSSSLFFRKVVSSTGILVSV 229
           LIPR D+VLHPDYL TFYE+++LE  R++LD+ V E  PYFSSSL+FR VVS TGILVS+
Sbjct: 171 LIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLEAKPYFSSSLYFRNVVSPTGILVSI 230

Query: 230 KCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKK 289
            CE+   + R EEIIR+ I PI+ EVL +WM+ C   GG  I + NER  LEKRD MIK 
Sbjct: 231 TCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTAIIEENERDHLEKRDRMIKS 290

Query: 290 KAIEMDLSKTMPLQFGEEVAERVLRVIRSAFK 317
           +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 291 RAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

The following BLAST results are available for this feature:
BLAST of CmoCh02G005540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RCCR_ARATH1.0e-5642.16Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=R... [more]
RCCR_HORVU3.2e-4240.10Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 ... [more]
BLAST of CmoCh02G005540 vs. TrEMBL
Match NameE-valueIdentityDescription
Q1ELT6_CITLA1.6e-13680.76Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=... [more]
A0A0A0LLX2_CUCSA2.8e-13076.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1[more]
C6L812_CUCSA5.1e-9584.76Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=C... [more]
B9HH31_POPTR4.6e-8862.13Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2[more]
V4SF05_9ROSI4.7e-8561.57Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1[more]
BLAST of CmoCh02G005540 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37000.15.8e-5842.16 accelerated cell death 2 (ACD2)[more]
BLAST of CmoCh02G005540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|106880172|emb|CAJ80768.1|2.2e-13680.76red chlorophyll catabolite reductase [Citrullus lanatus][more]
gi|449460580|ref|XP_004148023.1|4.1e-13076.31PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus][more]
gi|659116003|ref|XP_008457850.1|9.1e-13074.01PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo][more]
gi|253787599|dbj|BAH84859.1|7.3e-9584.76putative red chlorophyll catabolite reductase, partial [Cucumis sativus][more]
gi|566180698|ref|XP_002310112.2|6.6e-8862.13hypothetical protein POPTR_0007s11040g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009439RCC_reductase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0042440 pigment metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0050789 regulation of biological process
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005540.1CmoCh02G005540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009439Red chlorophyll catabolite reductasePFAMPF06405RCC_reductasecoord: 60..312
score: 7.2E
NoneNo IPR availablePANTHERPTHR34685FAMILY NOT NAMEDcoord: 25..318
score: 1.5E
NoneNo IPR availablePANTHERPTHR34685:SF2RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTICcoord: 25..318
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G005540Cucumber (Chinese Long) v3cmocucB0693
CmoCh02G005540Cucumber (Chinese Long) v3cmocucB0682
CmoCh02G005540Cucumber (Chinese Long) v3cmocucB0685
CmoCh02G005540Watermelon (97103) v2cmowmbB594
CmoCh02G005540Watermelon (97103) v2cmowmbB613
CmoCh02G005540Wax gourdcmowgoB0744
CmoCh02G005540Cucumber (Gy14) v1cgycmoB1019
CmoCh02G005540Cucumber (Gy14) v1cgycmoB1020
CmoCh02G005540Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G005540Wild cucumber (PI 183967)cmocpiB576
CmoCh02G005540Cucumber (Chinese Long) v2cmocuB571
CmoCh02G005540Melon (DHL92) v3.5.1cmomeB533
CmoCh02G005540Melon (DHL92) v3.5.1cmomeB544
CmoCh02G005540Watermelon (Charleston Gray)cmowcgB532
CmoCh02G005540Watermelon (Charleston Gray)cmowcgB549
CmoCh02G005540Watermelon (97103) v1cmowmB598
CmoCh02G005540Watermelon (97103) v1cmowmB581
CmoCh02G005540Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G005540Bottle gourd (USVL1VR-Ls)cmolsiB530
CmoCh02G005540Bottle gourd (USVL1VR-Ls)cmolsiB539
CmoCh02G005540Cucumber (Gy14) v2cgybcmoB217
CmoCh02G005540Cucumber (Gy14) v2cgybcmoB226
CmoCh02G005540Melon (DHL92) v3.6.1cmomedB611
CmoCh02G005540Melon (DHL92) v3.6.1cmomedB622
CmoCh02G005540Silver-seed gourdcarcmoB1422