CmoCh02G005530.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCAACGGCATCGTTTTGCTTAGATCCATTTCGATTGCCTTCTTCTTAATCATAAGGTCTCTCTTCTCCAACAAACTCCTTTCATTACCATCTTCAATCTCCCTTCCACCATTACTACACAACTCCATCCATATCCTCAACACCTCTTTCGAGATCGGACCGATTTCCTCACGGATAATCTCTTCCACACGCCCCGATTCGCTCTCCTCACACTTCACACTCACTAGAATTCCGGTCGACGAAACAACTTTTCGAAAGAAGAGCGACGACGAGAAGTACGGGCTTACTTCCGGCACGCTGTCGAGTCGGCGTCGATACTTCTCGAGCTCAGTTTCCTCGTAGAAAGTGGTGAGGTAGTCGGGATGGAGGACGATATCGACTCGAGGGATCAAATCGAGGAAGAAGATTAGAAAAGTAGGGCTGCATTGAACTAACTCGAATTGGAAATGAGGAATGTCGTTTGTGGTTTTCAGGTAGCCGGCGATGTTGGTTATGTTGAACGCGCCGCCGTGTGGTTGCTTTAAGTGTAACCAACTTGCAATCATGAAATCAATCTGAAATTCCGAGAAAGTTGGAACAATTTAATTTTTTTAAAAAAAATTAAATTACAACCAAAAGAAAGTTACCGGCGACGGTGGAAGGGCAGATCGGATGAGGAGAGTGCCCTGTGAAGTGCCGGGTTGGTTCTGATAATACTCTACATCCGACGGAACCGTCGACGGAAGTAGATGCTCTCCGACCCCATCATCGACGGCTTGGATTAAATCCACCATCAGATCTCTGTGCGCAGCCGTCAGATGCGGAAACTCCATCAGCTTCGACGCCGGCCGACCACTCCCCATCGCCGCGGACGGCAGCTCCGCCTTGATTACTTGCCGTGTTCTTCCTCTACTTCCTCCTTGGAAACGCAATGGTGGAAGACAATAACAAGCTCTTGGGACCAGCGTCAAGGTTGTCAAAGCCATTTGTGGCCTCTCATTGCTTCATTATCTTTATTTATTTATTTTATTTTTTATTCATAAAAAAATATATTTTAATCATTTTCATTTTCAAATTATTTATAAAGAGGAATGAAACACATTTATAATTATTTTTTAAATTTATTTATACAATTTTATTAAAATCTTTTTTTTTAAGCATAGTTTTTAATATTAAATATTAAAAATAAAAAAATATATACTAAAATTTTCATTTTAATTAGAATTTAGTTATTCACCACATACGAGGATCCATGGATCCATGCCTATGGGTGAGTAGTTATTCACCATTTTAATTAGAATTTAGTTATTCACCGTATAGGAGAATTAATTTAAAATATTTTAATATTGACGTAACAAAAGTAAAGTAGTTAATAATTAATTATTTAATATTAGCTAATGTAATAATTATTTTTTAAATAATTTGTTTATATTCGTAAATACAATTATTTGATTATATTATTCATTTTTTTGGAATTTTTTTCTAGACGCAATGAACAAAATTTTAAACTAAACAGAGTTGTGGGGCCCGAAGAAACCTAACTGAGCAGATATTTTCGTTATCCCTAATCCAATCCGAGCTATCCCATCTTCGACACGGATGAAAATAAGATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTGTATGCGTCTCTATGTCTCTGTCTCTTAAGAAATTTAGATAATCAAACTGTTTCGAGTGTACTCTGATCTGCTCCCAATTTTAGCGTTCCGGAATTGAGGATTTAAAATTTAAATTTCTTTCATAGTCTGCAGATCGATTAGATAGAAAATTGATTGTTTATGCATCTGTTAAATACTTTTTGAATCCAAATTTATCAAATCTCCAACGCTTAGCATGTTAGATACCACGGATTATTGAGTTATTACATTAATCAAAATCTCTAGCGGTTTGTAATTGTTTTGTTAAGCATTTGAACTAAAATTCTAATGTAAGTGTTTCCAACAAATCAAGAGTATGAGATAATTGTGAAAATTTTGTAGCAGCAGATCCAAATTCAAACTAACAAATTGGTAATGAGATTGTGTTCGTTATTTAATCTATGTTTCTTAACTTTTGTGTTAGATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGAAATGGTTTTGCTTTGCTTGTTGGTTGTAAATGTATAATGTATTATTTAGATGCTTAATGAAGTTAATTTCATTTATGATTTTAGCGTTGAACGGATAAAAAGGTTAATAAGACTAAGTA GCAACGGCATCGTTTTGCTTAGATCCATTTCGATTGCCTTCTTCTTAATCATAAGGTCTCTCTTCTCCAACAAACTCCTTTCATTACCATCTTCAATCTCCCTTCCACCATTACTACACAACTCCATCCATATCCTCAACACCTCTTTCGAGATCGGACCGATTTCCTCACGGATAATCTCTTCCACACGCCCCGATTCGCTCTCCTCACACTTCACACTCACTAGAATTCCGGTCGACGAAACAACTTTTCGAAAGAAGAGCGACGACGAGAAGTACGGGCTTACTTCCGGCACGCTGTCGAGTCGGCGTCGATACTTCTCGAGCTCAGTTTCCTCGTAGAAAGTGGTGAGGTAGTCGGGATGGAGGACGATATCGACTCGAGGGATCAAATCGAGGAAGAAGATTAGAAAAGTAGGGCTGCATTGAACTAACTCGAATTGGAAATGAGGAATGTCGTTTGTGGTTTTCAGGTAGCCGGCGATGTTGGTTATGTTGAACGCGCCGCCGTGTGGTTGCTTTAAGTGTAACCAACTTGCAATCATGAAATCAATCTGAAATTCCGAGAAAGTTGGAACAATTTAATTTTTTTAAAAAAAATTAAATTACAACCAAAAGAAAGTTACCGGCGACGGTGGAAGGGCAGATCGGATGAGGAGAGTGCCCTGTGAAGTGCCGGGTTGGTTCTGATAATACTCTACATCCGACGGAACCGTCGACGGAAGTAGATGCTCTCCGACCCCATCATCGACGGCTTGGATTAAATCCACCATCAGATCTCTGTGCGCAGCCGTCAGATGCGGAAACTCCATCAGCTTCGACGCCGGCCGACCACTCCCCATCGCCGCGGACGGCAGCTCCGCCTTGATTACTTGCCGTGTTCTTCCTCTACTTCCTCCTTGGAAACGCAATGGTGGAAGACAATAACAAGCTCTTGGGACCAGCGTCAAGAGTTGTGGGGCCCGAAGAAACCTAACTGAGCAGATATTTTCGTTATCCCTAATCCAATCCGAGCTATCCCATCTTCGACACGGATGAAAATAAGATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGAAATGGTTTTGCTTTGCTTGTTGGTTGTAAATGTATAATGTATTATTTAGATGCTTAATGAAGTTAATTTCATTTATGATTTTAGCGTTGAACGGATAAAAAGGTTAATAAGACTAAGTA ATGCCAAACATGGCGTTGATGGTTTATCCATCTGCAAAAGCTTTCAGTCTTCCGCCGCCGGTGGAATCCCGTTTCAGAGAATTAGTGATAAGGAACGCAGCGTCGAACATGGCGGAGAATGTGCCGATCCGGCCGGGATCGTCGTCGAAGCTGAAGGAGTTTCCACATCTGTCGGCTTCTCATAGAGCTCTGATGACTGATCTCGTCGGCGCCACTGAATCTCGACTCGAAGATCGTCTTCTTCCTTGCACTCTTCCTCCTGATGTTGAATACTTCCAGAATCAGAACGGGACTTCGCAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATTAATTTCATATTGGGAAGTTGGTTGCATAGCCAGCTACCAACAGGAGCATCATTAAACATTGCAAGCCTTTCTGCCTACTTGAGGCCATCAACTGATGCTCCAAACTTCCTCATAGAATTCATTCAAAGCTCTCCAACCTCCCTCATTCTCATTCTGGATCTACCTCCCAGAAAGGATCTGGTGCTCAATCCAGACTACCTTCAATTGTTCTATGAAGATACAGGATTAGACAAATACCGTAAAGCAATCGAAGAACTCCCTGAAGTACGACCATATGCCATGTCCTCTCTCTTCTTCCGCTCCTTAGTTTCTCCAACTTCCATAATTGTCCGTGTCGATACGGAATCGGGAGGACCCGAACGCATGGAGGAGATTATAGCGAACCATGTCGGTCCCGTTGCAAGAGATGTGATTCGGGTGTGGTTGGATGAATGTGCTTGCAAGGAGAGAGGGGTTGGAGAGATGGAAAGAGGGAACATTGAGAAGAGGGATGAGTTGGTTAAGAAGAAAACCATTGATATAGACTTGGGTTCTAGTTTGCCAAGATTGTTTGGCCAGGAAATAGCAGATAGAGTAGTGGCAGCCATCCAACAAATCTTTGAAGCATGA
BLAST of CmoCh02G005530.1 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2) HSP 1 Score: 285.4 bits (729), Expect = 7.5e-76 Identity = 135/268 (50.37%), Postives = 194/268 (72.39%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.2e-49 Identity = 94/201 (46.77%), Postives = 142/201 (70.65%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TrEMBL
Match: D1MWY7_CITLA (Red chlorophyll catabolite reductase OS=Citrullus lanatus subsp. vulgaris GN=CitRCCR PE=2 SV=1) HSP 1 Score: 510.0 bits (1312), Expect = 2.1e-141 Identity = 263/319 (82.45%), Postives = 282/319 (88.40%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TrEMBL
Match: A0A0A0LJH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285300 PE=4 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 1.5e-139 Identity = 261/318 (82.08%), Postives = 278/318 (87.42%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TrEMBL
Match: D7SVY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00680 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95 Identity = 173/298 (58.05%), Postives = 227/298 (76.17%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TrEMBL
Match: A0A067GHQ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020001mg PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91 Identity = 179/321 (55.76%), Postives = 227/321 (70.72%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TrEMBL
Match: V4RWD5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026041mg PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91 Identity = 179/321 (55.76%), Postives = 227/321 (70.72%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2)) HSP 1 Score: 285.4 bits (729), Expect = 4.2e-77 Identity = 135/268 (50.37%), Postives = 194/268 (72.39%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. NCBI nr
Match: gi|270308988|dbj|BAI52947.1| (red chlorophyll catabolite reductase [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 510.0 bits (1312), Expect = 3.0e-141 Identity = 263/319 (82.45%), Postives = 282/319 (88.40%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. NCBI nr
Match: gi|778669988|ref|XP_011649338.1| (PREDICTED: red chlorophyll catabolite reductase [Cucumis sativus]) HSP 1 Score: 503.8 bits (1296), Expect = 2.1e-139 Identity = 261/318 (82.08%), Postives = 278/318 (87.42%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. NCBI nr
Match: gi|659116001|ref|XP_008457849.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo]) HSP 1 Score: 496.1 bits (1276), Expect = 4.5e-137 Identity = 258/318 (81.13%), Postives = 277/318 (87.11%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. NCBI nr
Match: gi|225438706|ref|XP_002277744.1| (PREDICTED: red chlorophyll catabolite reductase [Vitis vinifera]) HSP 1 Score: 357.5 bits (916), Expect = 2.5e-95 Identity = 173/298 (58.05%), Postives = 227/298 (76.17%), Query Frame = 1
BLAST of CmoCh02G005530.1 vs. NCBI nr
Match: gi|1009145038|ref|XP_015890117.1| (PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Ziziphus jujuba]) HSP 1 Score: 352.8 bits (904), Expect = 6.1e-94 Identity = 176/306 (57.52%), Postives = 225/306 (73.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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