CmoCh02G002420.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA
BLAST of CmoCh02G002420.1 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 4.7e-44 Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 6.9e-11 Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10 Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 3.5e-78 Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TrEMBL
Match: A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61 Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TrEMBL
Match: A5ADW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037474 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.9e-61 Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TrEMBL
Match: F6HHR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01330 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.9e-61 Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TrEMBL
Match: C6TE74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G223600 PE=2 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 6.2e-59 Identity = 114/155 (73.55%), Postives = 128/155 (82.58%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein) HSP 1 Score: 178.7 bits (452), Expect = 2.7e-45 Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein) HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16 Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15 Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TAIR10
Match: AT3G43430.1 (AT3G43430.1 RING/U-box superfamily protein) HSP 1 Score: 71.6 bits (174), Expect = 4.6e-13 Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B) HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. NCBI nr
Match: gi|449444454|ref|XP_004139989.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]) HSP 1 Score: 298.9 bits (764), Expect = 5.0e-78 Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. NCBI nr
Match: gi|659094560|ref|XP_008448128.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo]) HSP 1 Score: 296.2 bits (757), Expect = 3.2e-77 Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. NCBI nr
Match: gi|590712545|ref|XP_007049410.1| (RING/U-box superfamily protein, putative [Theobroma cacao]) HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61 Identity = 118/152 (77.63%), Postives = 132/152 (86.84%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. NCBI nr
Match: gi|147843500|emb|CAN82068.1| (hypothetical protein VITISV_037474 [Vitis vinifera]) HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61 Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
BLAST of CmoCh02G002420.1 vs. NCBI nr
Match: gi|225447484|ref|XP_002264718.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Vitis vinifera]) HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61 Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
|