CmoCh01G018080.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018080.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNAJ heat shock N-terminal domain-containing protein
Location	Cmo_Chr01 : 13277225 .. 13278583 (+)
Sequence length	1014

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATGCTCATAAGAATGCAAATATATTTGCGATAGCATTCGTTTGGTGGAAAAACATCTCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCAGTATCGTCATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCGTAATGTTTCAACCCGAGTCTCTCTGTCCATTCCAGATTTCTCAACTTCGCTTAAATTCCTATGAAAAATTTTTCTGGTAATGCAGCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTAATTTGATTTAATTCAATCAAATCGCTAAAAGAAACCCTAACTCTTCGATAATCATACCAACCACGGTTGGCCCTAATTCGCTCCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGTCGGTAGAAAACAACAACAACAATGCCCTAAATTAAATTCCGAGATTGGATTATAACTGTAAGTAATTTTGAGGTATGATTTACAGGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGTAATCTCCATTTCCATTTCCCCTCAAATCTCACCGCAATAAACTTCTAAAACAATGTCTGTTTTGATCGGCGATGAATGTAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATGACTTTATGAATAGTTTCAAATTTCATTTCGAATATAATATATAACTATT

mRNA sequence

TCTATGCTCATAAGAATGCAAATATATTTGCGATAGCATTCGTTTGGTGGAAAAACATCTCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCAGTATCGTCATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATGACTTTATGAATAGTTTCAAATTTCATTTCGAATATAATATATAACTATT

Coding sequence (CDS)

ATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAG

Homology

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BLAST of CmoCh01G018080.1 vs. Swiss-Prot
Match: NDHU_ARATH (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana GN=ndhU PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 113/220 (51.36%), Postives = 146/220 (66.36%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI   + L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL V LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

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BLAST of CmoCh01G018080.1 vs. TrEMBL
Match: A0A0A0L072_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNFLSPT+K T I FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+EPE ESSL+AS  S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

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BLAST of CmoCh01G018080.1 vs. TrEMBL
Match: A0A067KQD8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07610 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.7e-63
Identity = 131/219 (59.82%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A  STT+T  V+I R +F  PT+K   IF N +T   +P KF +R+S+D S ET  T   
Sbjct: 2   AASSTTAT--VYITRQSFPIPTTKNATIFTNSVTFAARPRKFVIRSSSDGSTETAAT-VV 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
            E E E+S++A +G  SLISALNVERALRGIPITDV++YGRLG++RGC Y+QV +AY  K
Sbjct: 62  EESETETSIEAPEGPPSLISALNVERALRGIPITDVDYYGRLGVQRGCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           VEEL +QGL+EEE+ +K+E LKE+Y+ILSS EERRMYDWSL R   P++Y WPFE D ++
Sbjct: 122 VEELLNQGLDEEEVREKMEQLKETYSILSSPEERRMYDWSLGRSENPDRYAWPFETDKSR 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
             T+ PPP+EPED GPTR VGYF LGW VLS+ LSI LN
Sbjct: 182 TPTEPPPPQEPEDVGPTRFVGYFVLGWIVLSLALSILLN 217

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BLAST of CmoCh01G018080.1 vs. TrEMBL
Match: A0A061GKF9_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_037372 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.4e-61
Identity = 132/218 (60.55%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A+ ST +T  +++ R N  +PT K  ++  + I    +  + S+R+S D S+ET     A
Sbjct: 2   ALSSTAAT--LYLPRKNLHAPTPKNGSMLSSSIGFATRQRRLSIRSSGDVSSET----PA 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
           +E E E S++A  G  SLISALNVERALRGI ITD +HYGRLGL+R C Y+QV +AY  K
Sbjct: 62  TEAESEQSIEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRKCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           V+EL  QGL+EEELS+K++LLKESY+ILSSV+ERRMYDWSL+R  EP +Y WPFE DITQ
Sbjct: 122 VDELPKQGLDEEELSKKMDLLKESYSILSSVKERRMYDWSLARTEEPGRYAWPFEEDITQ 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIAL 224
             TQ PPP+EPED GPTRLVGYF LGWF+LSVVLSIAL
Sbjct: 182 TPTQEPPPQEPEDVGPTRLVGYFILGWFILSVVLSIAL 213

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BLAST of CmoCh01G018080.1 vs. TrEMBL
Match: A0A0D2RTT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-60
Identity = 129/216 (59.72%), Postives = 162/216 (75.00%), Query Frame = 1


Query: 9   STTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLP--KPLKFSVRNSNDSSAETVTTDTAS 68
           STT+ T ++I  +N  + T K  ++F N   S    +  + S+R+S D S+ET TT+T S
Sbjct: 4   STTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTTETES 63

Query: 69  EPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKV 128
           E   +S  +A  G  SLISALNVERALRGI ITD +HYGRLGL+RGC Y+QV +AY  KV
Sbjct: 64  E---KSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYRNKV 123

Query: 129 EELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQI 188
           +EL +QGL+EEELS+K++LLKESY+ILSSVEERR+YDWSL+R  +P++Y WPFE DITQ 
Sbjct: 124 DELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDITQT 183

Query: 189 QTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIA 223
            T+ PPP EPED GPTR VGYF LGW +LS VLSIA
Sbjct: 184 PTEEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIA 216

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BLAST of CmoCh01G018080.1 vs. TrEMBL
Match: V4U0A3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009451mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.6e-58
Identity = 132/223 (59.19%), Postives = 162/223 (72.65%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSL--PKPLK-FSVRNSNDSSAETVT 64
           AA+ STT+T  V I + NF +P+ K  ++  + I S    +P K  +VRN+ D SAET +
Sbjct: 2   AAISSTTAT--VCISQKNFYTPSPKRNSLLSHSINSYFPTRPRKQLTVRNTGDVSAETGS 61

Query: 65  TDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 124
           T+   EPE  S        SSLISALNVERALRGI ITD +HYGRLGLRRGC +D+V +A
Sbjct: 62  TEI--EPEARSD------PSSLISALNVERALRGIAITDADHYGRLGLRRGCSFDEVALA 121

Query: 125 YNIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEA 184
           Y  K+E LK QGL+EEE S+K++LLKESY+ILSS EERR+YDWSL+R   P++Y WPFE 
Sbjct: 122 YKNKLERLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLARTENPDRYLWPFEV 181

Query: 185 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           D+TQ     PPP+EPED GPTRLVGYF LGW +LS VLSIALN
Sbjct: 182 DVTQTPKGTPPPQEPEDVGPTRLVGYFMLGWLILSFVLSIALN 214

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BLAST of CmoCh01G018080.1 vs. TAIR10
Match: AT5G21430.1 (AT5G21430.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 204.5 bits (519), Expect = 6.7e-53
Identity = 113/220 (51.36%), Postives = 146/220 (66.36%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI   + L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL V LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of CmoCh01G018080.1 vs. NCBI nr
Match: gi|778696732|ref|XP_011654197.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNFLSPT+K T I FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+EPE ESSL+AS  S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of CmoCh01G018080.1 vs. NCBI nr
Match: gi|659104015|ref|XP_008452780.1| (PREDICTED: uncharacterized protein LOC103493698 [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNF SPTSK TAI FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKV+ELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of CmoCh01G018080.1 vs. NCBI nr
Match: gi|802629809|ref|XP_012077211.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas])

HSP 1 Score: 249.2 bits (635), Expect = 6.8e-63
Identity = 131/219 (59.82%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A  STT+T  V+I R +F  PT+K   IF N +T   +P KF +R+S+D S ET  T   
Sbjct: 2   AASSTTAT--VYITRQSFPIPTTKNATIFTNSVTFAARPRKFVIRSSSDGSTETAAT-VV 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
            E E E+S++A +G  SLISALNVERALRGIPITDV++YGRLG++RGC Y+QV +AY  K
Sbjct: 62  EESETETSIEAPEGPPSLISALNVERALRGIPITDVDYYGRLGVQRGCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           VEEL +QGL+EEE+ +K+E LKE+Y+ILSS EERRMYDWSL R   P++Y WPFE D ++
Sbjct: 122 VEELLNQGLDEEEVREKMEQLKETYSILSSPEERRMYDWSLGRSENPDRYAWPFETDKSR 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
             T+ PPP+EPED GPTR VGYF LGW VLS+ LSI LN
Sbjct: 182 TPTEPPPPQEPEDVGPTRFVGYFVLGWIVLSLALSILLN 217

[Close]

BLAST of CmoCh01G018080.1 vs. NCBI nr
Match: gi|590574441|ref|XP_007012402.1| (Chaperone DnaJ-domain superfamily protein [Theobroma cacao])

HSP 1 Score: 243.0 bits (619), Expect = 4.9e-61
Identity = 132/218 (60.55%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A+ ST +T  +++ R N  +PT K  ++  + I    +  + S+R+S D S+ET     A
Sbjct: 2   ALSSTAAT--LYLPRKNLHAPTPKNGSMLSSSIGFATRQRRLSIRSSGDVSSET----PA 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
           +E E E S++A  G  SLISALNVERALRGI ITD +HYGRLGL+R C Y+QV +AY  K
Sbjct: 62  TEAESEQSIEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRKCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           V+EL  QGL+EEELS+K++LLKESY+ILSSV+ERRMYDWSL+R  EP +Y WPFE DITQ
Sbjct: 122 VDELPKQGLDEEELSKKMDLLKESYSILSSVKERRMYDWSLARTEEPGRYAWPFEEDITQ 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIAL 224
             TQ PPP+EPED GPTRLVGYF LGWF+LSVVLSIAL
Sbjct: 182 TPTQEPPPQEPEDVGPTRLVGYFILGWFILSVVLSIAL 213

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BLAST of CmoCh01G018080.1 vs. NCBI nr
Match: gi|823221345|ref|XP_012443363.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 129/216 (59.72%), Postives = 162/216 (75.00%), Query Frame = 1


Query: 9   STTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLP--KPLKFSVRNSNDSSAETVTTDTAS 68
           STT+ T ++I  +N  + T K  ++F N   S    +  + S+R+S D S+ET TT+T S
Sbjct: 4   STTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTTETES 63

Query: 69  EPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKV 128
           E   +S  +A  G  SLISALNVERALRGI ITD +HYGRLGL+RGC Y+QV +AY  KV
Sbjct: 64  E---KSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYRNKV 123

Query: 129 EELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQI 188
           +EL +QGL+EEELS+K++LLKESY+ILSSVEERR+YDWSL+R  +P++Y WPFE DITQ 
Sbjct: 124 DELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDITQT 183

Query: 189 QTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIA 223
            T+ PPP EPED GPTR VGYF LGW +LS VLSIA
Sbjct: 184 PTEEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIA 216

The following BLAST results are available for this feature:

BLAST of CmoCh01G018080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHU_ARATH	1.2e-51	51.36	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh01G018080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L072_CUCSA	1.8e-99	87.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647480 PE=4 SV=1	[more]
A0A067KQD8_JATCU	4.7e-63	59.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07610 PE=4 SV=1	[more]
A0A061GKF9_THECC	3.4e-61	60.55	Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_037372 PE=4 ...	[more]
A0A0D2RTT7_GOSRA	3.7e-60	59.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041100 PE=4 SV=1	[more]
V4U0A3_9ROSI	4.6e-58	59.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009451mg PE=4 SV=1	[more]

BLAST of CmoCh01G018080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21430.1	6.7e-53	51.36	Chaperone DnaJ-domain superfamily protein	[more]

BLAST of CmoCh01G018080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696732\|ref\|XP_011654197.1\|	2.6e-99	87.44	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sati...	[more]
gi\|659104015\|ref\|XP_008452780.1\|	2.6e-99	87.44	PREDICTED: uncharacterized protein LOC103493698 [Cucumis melo]	[more]
gi\|802629809\|ref\|XP_012077211.1\|	6.8e-63	59.82	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha cur...	[more]
gi\|590574441\|ref\|XP_007012402.1\|	4.9e-61	60.55	Chaperone DnaJ-domain superfamily protein [Theobroma cacao]	[more]
gi\|823221345\|ref\|XP_012443363.1\|	5.4e-60	59.72	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Gossypium ra...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G018080	CmoCh01G018080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018080.1	CmoCh01G018080.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018080.1.exon.5	CmoCh01G018080.1.exon.5	exon
CmoCh01G018080.1.exon.4	CmoCh01G018080.1.exon.4	exon
CmoCh01G018080.1.exon.3	CmoCh01G018080.1.exon.3	exon
CmoCh01G018080.1.exon.2	CmoCh01G018080.1.exon.2	exon
CmoCh01G018080.1.exon.1	CmoCh01G018080.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018080.1.five_prime_UTR.1	CmoCh01G018080.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018080.1.CDS.1	CmoCh01G018080.1.CDS.1	CDS
CmoCh01G018080.1.CDS.2	CmoCh01G018080.1.CDS.2	CDS
CmoCh01G018080.1.CDS.3	CmoCh01G018080.1.CDS.3	CDS
CmoCh01G018080.1.CDS.4	CmoCh01G018080.1.CDS.4	CDS
CmoCh01G018080.1.CDS.5	CmoCh01G018080.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018080.1.three_prime_UTR.1	CmoCh01G018080.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 99..163 score: 9.
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 101..167 score: 1.9