CmoCh01G018080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNAJ heat shock N-terminal domain-containing protein
Location	Cmo_Chr01 : 13277225 .. 13278583 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATGCTCATAAGAATGCAAATATATTTGCGATAGCATTCGTTTGGTGGAAAAACATCTCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCAGTATCGTCATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCGTAATGTTTCAACCCGAGTCTCTCTGTCCATTCCAGATTTCTCAACTTCGCTTAAATTCCTATGAAAAATTTTTCTGGTAATGCAGCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTAATTTGATTTAATTCAATCAAATCGCTAAAAGAAACCCTAACTCTTCGATAATCATACCAACCACGGTTGGCCCTAATTCGCTCCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGTCGGTAGAAAACAACAACAACAATGCCCTAAATTAAATTCCGAGATTGGATTATAACTGTAAGTAATTTTGAGGTATGATTTACAGGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGTAATCTCCATTTCCATTTCCCCTCAAATCTCACCGCAATAAACTTCTAAAACAATGTCTGTTTTGATCGGCGATGAATGTAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATGACTTTATGAATAGTTTCAAATTTCATTTCGAATATAATATATAACTATT

mRNA sequence

TCTATGCTCATAAGAATGCAAATATATTTGCGATAGCATTCGTTTGGTGGAAAAACATCTCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCAGTATCGTCATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATGACTTTATGAATAGTTTCAAATTTCATTTCGAATATAATATATAACTATT

Coding sequence (CDS)

ATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCAACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAGCCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAG

Homology

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BLAST of CmoCh01G018080 vs. Swiss-Prot
Match: NDHU_ARATH (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana GN=ndhU PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 113/220 (51.36%), Postives = 146/220 (66.36%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI   + L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL V LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

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BLAST of CmoCh01G018080 vs. TrEMBL
Match: A0A0A0L072_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNFLSPT+K T I FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+EPE ESSL+AS  S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

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BLAST of CmoCh01G018080 vs. TrEMBL
Match: A0A067KQD8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07610 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.7e-63
Identity = 131/219 (59.82%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A  STT+T  V+I R +F  PT+K   IF N +T   +P KF +R+S+D S ET  T   
Sbjct: 2   AASSTTAT--VYITRQSFPIPTTKNATIFTNSVTFAARPRKFVIRSSSDGSTETAAT-VV 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
            E E E+S++A +G  SLISALNVERALRGIPITDV++YGRLG++RGC Y+QV +AY  K
Sbjct: 62  EESETETSIEAPEGPPSLISALNVERALRGIPITDVDYYGRLGVQRGCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           VEEL +QGL+EEE+ +K+E LKE+Y+ILSS EERRMYDWSL R   P++Y WPFE D ++
Sbjct: 122 VEELLNQGLDEEEVREKMEQLKETYSILSSPEERRMYDWSLGRSENPDRYAWPFETDKSR 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
             T+ PPP+EPED GPTR VGYF LGW VLS+ LSI LN
Sbjct: 182 TPTEPPPPQEPEDVGPTRFVGYFVLGWIVLSLALSILLN 217

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BLAST of CmoCh01G018080 vs. TrEMBL
Match: A0A061GKF9_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_037372 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.4e-61
Identity = 132/218 (60.55%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A+ ST +T  +++ R N  +PT K  ++  + I    +  + S+R+S D S+ET     A
Sbjct: 2   ALSSTAAT--LYLPRKNLHAPTPKNGSMLSSSIGFATRQRRLSIRSSGDVSSET----PA 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
           +E E E S++A  G  SLISALNVERALRGI ITD +HYGRLGL+R C Y+QV +AY  K
Sbjct: 62  TEAESEQSIEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRKCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           V+EL  QGL+EEELS+K++LLKESY+ILSSV+ERRMYDWSL+R  EP +Y WPFE DITQ
Sbjct: 122 VDELPKQGLDEEELSKKMDLLKESYSILSSVKERRMYDWSLARTEEPGRYAWPFEEDITQ 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIAL 224
             TQ PPP+EPED GPTRLVGYF LGWF+LSVVLSIAL
Sbjct: 182 TPTQEPPPQEPEDVGPTRLVGYFILGWFILSVVLSIAL 213

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BLAST of CmoCh01G018080 vs. TrEMBL
Match: A0A0D2RTT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-60
Identity = 129/216 (59.72%), Postives = 162/216 (75.00%), Query Frame = 1


Query: 9   STTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLP--KPLKFSVRNSNDSSAETVTTDTAS 68
           STT+ T ++I  +N  + T K  ++F N   S    +  + S+R+S D S+ET TT+T S
Sbjct: 4   STTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTTETES 63

Query: 69  EPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKV 128
           E   +S  +A  G  SLISALNVERALRGI ITD +HYGRLGL+RGC Y+QV +AY  KV
Sbjct: 64  E---KSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYRNKV 123

Query: 129 EELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQI 188
           +EL +QGL+EEELS+K++LLKESY+ILSSVEERR+YDWSL+R  +P++Y WPFE DITQ 
Sbjct: 124 DELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDITQT 183

Query: 189 QTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIA 223
            T+ PPP EPED GPTR VGYF LGW +LS VLSIA
Sbjct: 184 PTEEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIA 216

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BLAST of CmoCh01G018080 vs. TrEMBL
Match: V4U0A3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009451mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.6e-58
Identity = 132/223 (59.19%), Postives = 162/223 (72.65%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSL--PKPLK-FSVRNSNDSSAETVT 64
           AA+ STT+T  V I + NF +P+ K  ++  + I S    +P K  +VRN+ D SAET +
Sbjct: 2   AAISSTTAT--VCISQKNFYTPSPKRNSLLSHSINSYFPTRPRKQLTVRNTGDVSAETGS 61

Query: 65  TDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 124
           T+   EPE  S        SSLISALNVERALRGI ITD +HYGRLGLRRGC +D+V +A
Sbjct: 62  TEI--EPEARSD------PSSLISALNVERALRGIAITDADHYGRLGLRRGCSFDEVALA 121

Query: 125 YNIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEA 184
           Y  K+E LK QGL+EEE S+K++LLKESY+ILSS EERR+YDWSL+R   P++Y WPFE 
Sbjct: 122 YKNKLERLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLARTENPDRYLWPFEV 181

Query: 185 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           D+TQ     PPP+EPED GPTRLVGYF LGW +LS VLSIALN
Sbjct: 182 DVTQTPKGTPPPQEPEDVGPTRLVGYFMLGWLILSFVLSIALN 214

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BLAST of CmoCh01G018080 vs. TAIR10
Match: AT5G21430.1 (AT5G21430.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 204.5 bits (519), Expect = 6.7e-53
Identity = 113/220 (51.36%), Postives = 146/220 (66.36%), Query Frame = 1


Query: 5   AAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI   + L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL V LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

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BLAST of CmoCh01G018080 vs. NCBI nr
Match: gi|778696732|ref|XP_011654197.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNFLSPT+K T I FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+EPE ESSL+AS  S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

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BLAST of CmoCh01G018080 vs. NCBI nr
Match: gi|659104015|ref|XP_008452780.1| (PREDICTED: uncharacterized protein LOC103493698 [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 1


Query: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           AAAAVP   STT VHIRRSNF SPTSK TAI FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVP---STTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKV+ELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of CmoCh01G018080 vs. NCBI nr
Match: gi|802629809|ref|XP_012077211.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas])

HSP 1 Score: 249.2 bits (635), Expect = 6.8e-63
Identity = 131/219 (59.82%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A  STT+T  V+I R +F  PT+K   IF N +T   +P KF +R+S+D S ET  T   
Sbjct: 2   AASSTTAT--VYITRQSFPIPTTKNATIFTNSVTFAARPRKFVIRSSSDGSTETAAT-VV 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
            E E E+S++A +G  SLISALNVERALRGIPITDV++YGRLG++RGC Y+QV +AY  K
Sbjct: 62  EESETETSIEAPEGPPSLISALNVERALRGIPITDVDYYGRLGVQRGCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           VEEL +QGL+EEE+ +K+E LKE+Y+ILSS EERRMYDWSL R   P++Y WPFE D ++
Sbjct: 122 VEELLNQGLDEEEVREKMEQLKETYSILSSPEERRMYDWSLGRSENPDRYAWPFETDKSR 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALN 225
             T+ PPP+EPED GPTR VGYF LGW VLS+ LSI LN
Sbjct: 182 TPTEPPPPQEPEDVGPTRFVGYFVLGWIVLSLALSILLN 217

[Close]

BLAST of CmoCh01G018080 vs. NCBI nr
Match: gi|590574441|ref|XP_007012402.1| (Chaperone DnaJ-domain superfamily protein [Theobroma cacao])

HSP 1 Score: 243.0 bits (619), Expect = 4.9e-61
Identity = 132/218 (60.55%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 6   AVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTA 65
           A+ ST +T  +++ R N  +PT K  ++  + I    +  + S+R+S D S+ET     A
Sbjct: 2   ALSSTAAT--LYLPRKNLHAPTPKNGSMLSSSIGFATRQRRLSIRSSGDVSSET----PA 61

Query: 66  SEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIK 125
           +E E E S++A  G  SLISALNVERALRGI ITD +HYGRLGL+R C Y+QV +AY  K
Sbjct: 62  TEAESEQSIEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRKCSYEQVTVAYKNK 121

Query: 126 VEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQ 185
           V+EL  QGL+EEELS+K++LLKESY+ILSSV+ERRMYDWSL+R  EP +Y WPFE DITQ
Sbjct: 122 VDELPKQGLDEEELSKKMDLLKESYSILSSVKERRMYDWSLARTEEPGRYAWPFEEDITQ 181

Query: 186 IQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIAL 224
             TQ PPP+EPED GPTRLVGYF LGWF+LSVVLSIAL
Sbjct: 182 TPTQEPPPQEPEDVGPTRLVGYFILGWFILSVVLSIAL 213

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BLAST of CmoCh01G018080 vs. NCBI nr
Match: gi|823221345|ref|XP_012443363.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 129/216 (59.72%), Postives = 162/216 (75.00%), Query Frame = 1


Query: 9   STTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLP--KPLKFSVRNSNDSSAETVTTDTAS 68
           STT+ T ++I  +N  + T K  ++F N   S    +  + S+R+S D S+ET TT+T S
Sbjct: 4   STTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTTETES 63

Query: 69  EPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKV 128
           E   +S  +A  G  SLISALNVERALRGI ITD +HYGRLGL+RGC Y+QV +AY  KV
Sbjct: 64  E---KSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYRNKV 123

Query: 129 EELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQI 188
           +EL +QGL+EEELS+K++LLKESY+ILSSVEERR+YDWSL+R  +P++Y WPFE DITQ 
Sbjct: 124 DELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDITQT 183

Query: 189 QTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIA 223
            T+ PPP EPED GPTR VGYF LGW +LS VLSIA
Sbjct: 184 PTEEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIA 216

The following BLAST results are available for this feature:

BLAST of CmoCh01G018080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHU_ARATH	1.2e-51	51.36	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh01G018080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L072_CUCSA	1.8e-99	87.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647480 PE=4 SV=1	[more]
A0A067KQD8_JATCU	4.7e-63	59.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07610 PE=4 SV=1	[more]
A0A061GKF9_THECC	3.4e-61	60.55	Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_037372 PE=4 ...	[more]
A0A0D2RTT7_GOSRA	3.7e-60	59.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041100 PE=4 SV=1	[more]
V4U0A3_9ROSI	4.6e-58	59.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009451mg PE=4 SV=1	[more]

BLAST of CmoCh01G018080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21430.1	6.7e-53	51.36	Chaperone DnaJ-domain superfamily protein	[more]

BLAST of CmoCh01G018080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696732\|ref\|XP_011654197.1\|	2.6e-99	87.44	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sati...	[more]
gi\|659104015\|ref\|XP_008452780.1\|	2.6e-99	87.44	PREDICTED: uncharacterized protein LOC103493698 [Cucumis melo]	[more]
gi\|802629809\|ref\|XP_012077211.1\|	6.8e-63	59.82	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha cur...	[more]
gi\|590574441\|ref\|XP_007012402.1\|	4.9e-61	60.55	Chaperone DnaJ-domain superfamily protein [Theobroma cacao]	[more]
gi\|823221345\|ref\|XP_012443363.1\|	5.4e-60	59.72	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Gossypium ra...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G018080.1	CmoCh01G018080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 99..163 score: 9.
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 101..167 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G018080	Cucsa.299780	Cucumber (Gy14) v1	cgycmoB0821
CmoCh01G018080	CmaCh01G017030	Cucurbita maxima (Rimu)	cmacmoB470
CmoCh01G018080	Cla007449	Watermelon (97103) v1	cmowmB433
CmoCh01G018080	Csa4G647480	Cucumber (Chinese Long) v2	cmocuB453
CmoCh01G018080	MELO3C016910	Melon (DHL92) v3.5.1	cmomeB435
CmoCh01G018080	ClCG05G015710	Watermelon (Charleston Gray)	cmowcgB411
CmoCh01G018080	CSPI04G25710	Wild cucumber (PI 183967)	cmocpiB457
CmoCh01G018080	Lsi04G013900	Bottle gourd (USVL1VR-Ls)	cmolsiB422
CmoCh01G018080	Cp4.1LG02g05900	Cucurbita pepo (Zucchini)	cmocpeB445
CmoCh01G018080	MELO3C016910.2	Melon (DHL92) v3.6.1	cmomedB499
CmoCh01G018080	CsaV3_4G036020	Cucumber (Chinese Long) v3	cmocucB0541
CmoCh01G018080	Cla97C05G096690	Watermelon (97103) v2	cmowmbB460
CmoCh01G018080	Bhi09G002537	Wax gourd	cmowgoB0617
CmoCh01G018080	CsGy4G024010	Cucumber (Gy14) v2	cgybcmoB475
CmoCh01G018080	Carg10716	Silver-seed gourd	carcmoB1043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G018080	Silver-seed gourd	carcmoB0614
CmoCh01G018080	Silver-seed gourd	carcmoB0872
CmoCh01G018080	Cucurbita moschata (Rifu)	cmocmoB014
CmoCh01G018080	Cucurbita maxima (Rimu)	cmacmoB042
CmoCh01G018080	Cucurbita maxima (Rimu)	cmacmoB469
CmoCh01G018080	Cucurbita pepo (Zucchini)	cmocpeB462
CmoCh01G018080	Cucurbita pepo (Zucchini)	cmocpeB465
CmoCh01G018080	Bottle gourd (USVL1VR-Ls)	cmolsiB412