CmoCh01G009740.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G009740.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribonuclease P/MRP protein subunit POP5
Location	Cmo_Chr01 : 6259295 .. 6260359 (-)
Sequence length	757

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGGTACATAAACCGTGTCTTTCTAAACAACATCGCAACCTCTGTATTTGTATAGCCTAATATTTGTTCTTGCCTTGGTGTTTATGTAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGTAAGTTTTTTGGTTAGGATCATCGTTTATGTTGCTGACTTCCAATTTGGGTATACACAATTGTGCTTGTACTTCAAGAATATAATCAGAATATGAATTTTGAACTTGTAAATAAGTTTAAACTCTTGTTCTGGGTAATTTCAATCCTTGTCTATTTTGTGCTGCACTGATTTGTAATAGAATTGAAGAAATGACATTGAATGAATGCGTTTTGTTTTACAGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

mRNA sequence

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

Coding sequence (CDS)

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGA

Homology

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BLAST of CmoCh01G009740.1 vs. Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-48
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]

BLAST of CmoCh01G009740.1 vs. Swiss-Prot
Match: POP5_SCHPO (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 43/137 (31.39%), Postives = 73/137 (53.28%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MV FK+RYL+FEV+    K+   D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEFF-DYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTA 120
            S  V+Y +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ ++G  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LRLDELKFEQYKLMVGP 133
           +  ++ +     LM  P
Sbjct: 121 IERNKSEIHNISLMDEP 136

[Close]

BLAST of CmoCh01G009740.1 vs. Swiss-Prot
Match: POP5_DICDI (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.4e-11
Identity = 36/118 (30.51%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV  KNRYL+ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRL 119
            YVNP T + IIR S E Y+++W A+T++ S    P+ F ++ + G+ R C+  A+++
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

[Close]

BLAST of CmoCh01G009740.1 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.2e-63
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISD 137
           LKFEQYKLMVG  + D
Sbjct: 121 LKFEQYKLMVGHYLPD 136

[Close]

BLAST of CmoCh01G009740.1 vs. TrEMBL
Match: A0A061ESH1_THECC (Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma cacao GN=TCM_020284 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPNK+   DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IRASREDYQ +W+AI++VRSI +CPV+FNLLDL+G+ RACKN AL+ DE
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   MQNCLEKI+ L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

[Close]

BLAST of CmoCh01G009740.1 vs. TrEMBL
Match: A0A0B0N993_GOSAR (Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F383_36351 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-60
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNK+++ DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IR SR++YQ +W++I+MVR I NCPV+FNLLDL+GN +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWSSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   M+NCLEKIR L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMKNCLEKIRILEH 154

[Close]

BLAST of CmoCh01G009740.1 vs. TrEMBL
Match: A0A0D2QNZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-60
Identity = 109/154 (70.78%), Postives = 133/154 (86.36%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNK+++ DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IR SR++YQ +W +I+MVR I NCPV+FNLLDL+GN +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWTSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+   V   MQNCLEKIR L++
Sbjct: 121 LKFEQYKLMVGARLLADVTQHMQNCLEKIRILEH 154

[Close]

BLAST of CmoCh01G009740.1 vs. TrEMBL
Match: B9IDE0_POPTR (Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 9.7e-60
Identity = 113/154 (73.38%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPN+D+  DDPIIITQYNVSKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIR SRE+YQ VW+AITMVR I NCPV+FNLLDL+G+ +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           +KFE YKL  G  +S  VN  MQNCLEKI+ L++
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]

BLAST of CmoCh01G009740.1 vs. TAIR10
Match: AT1G04635.1 (AT1G04635.1 ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.3e-49
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]

BLAST of CmoCh01G009740.1 vs. NCBI nr
Match: gi|449443879|ref|XP_004139703.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 134/154 (87.01%), Postives = 146/154 (94.81%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D VNLQMQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]

BLAST of CmoCh01G009740.1 vs. NCBI nr
Match: gi|659123073|ref|XP_008461474.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 132/154 (85.71%), Postives = 144/154 (93.51%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRLD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D V + MQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]

BLAST of CmoCh01G009740.1 vs. NCBI nr
Match: gi|700189194|gb|KGN44427.1| (hypothetical protein Csa_7G290500 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 6.1e-63
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISD 137
           LKFEQYKLMVG  + D
Sbjct: 121 LKFEQYKLMVGHYLPD 136

[Close]

BLAST of CmoCh01G009740.1 vs. NCBI nr
Match: gi|225455163|ref|XP_002268478.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera])

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-62
Identity = 113/154 (73.38%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY++ EV LDPN+D+A DDPIIITQ+NVSKAIKDSIL+NFGECG ASS GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASRE+YQ VW+AITMV+SI +CPV+FNLLDL+G+ RAC+N AL+ D+
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
            KFEQYKL+VG R++D +N QMQNCLE+I+ L++
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

[Close]

BLAST of CmoCh01G009740.1 vs. NCBI nr
Match: gi|590656554|ref|XP_007034303.1| (Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPNK+   DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IRASREDYQ +W+AI++VRSI +CPV+FNLLDL+G+ RACKN AL+ DE
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   MQNCLEKI+ L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

The following BLAST results are available for this feature:

BLAST of CmoCh01G009740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POP5_ARATH	9.4e-48	60.65	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1...	[more]
POP5_SCHPO	2.6e-13	31.39	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
POP5_DICDI	5.4e-11	30.51	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=...	[more]

BLAST of CmoCh01G009740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W3_CUCSA	4.2e-63	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1	[more]
A0A061ESH1_THECC	3.0e-61	73.38	Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma caca...	[more]
A0A0B0N993_GOSAR	1.5e-60	70.78	Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2QNZ4_GOSRA	3.3e-60	70.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1	[more]
B9IDE0_POPTR	9.7e-60	73.38	Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 S...	[more]

BLAST of CmoCh01G009740.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04635.1	5.3e-49	60.65	ribonuclease P family protein / Rpp14 family protein	[more]

BLAST of CmoCh01G009740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443879\|ref\|XP_004139703.1\|	1.6e-71	87.01	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]	[more]
gi\|659123073\|ref\|XP_008461474.1\|	3.9e-70	85.71	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo]	[more]
gi\|700189194\|gb\|KGN44427.1\|	6.1e-63	88.24	hypothetical protein Csa_7G290500 [Cucumis sativus]	[more]
gi\|225455163\|ref\|XP_002268478.1\|	6.7e-62	73.38	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera]	[more]
gi\|590656554\|ref\|XP_007034303.1\|	4.3e-61	73.38	Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002759	RNase_P/MRP_subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0004540	ribonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008033	tRNA processing

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030677	ribonuclease P complex
cellular_component	GO:0005773	vacuole
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0004526	ribonuclease P activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G009740	CmoCh01G009740	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G009740.1	CmoCh01G009740.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G009740.1.three_prime_UTR.1	CmoCh01G009740.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G009740.1.CDS.3	CmoCh01G009740.1.CDS.3	CDS
CmoCh01G009740.1.CDS.2	CmoCh01G009740.1.CDS.2	CDS
CmoCh01G009740.1.CDS.1	CmoCh01G009740.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G009740.1.exon.3	CmoCh01G009740.1.exon.3	exon
CmoCh01G009740.1.exon.2	CmoCh01G009740.1.exon.2	exon
CmoCh01G009740.1.exon.1	CmoCh01G009740.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002759	Ribonuclease P/MRP protein subunit	PFAM	PF01900	RNase_P_Rpp14	coord: 7..115 score: 2.5
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 2..153 score: 1.9
None	No IPR available	unknown	SSF160350	Rnp2-like	coord: 1..118 score: 1.7