Cla012990 (gene) Watermelon (97103) v1

NameCla012990
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSelf-incompatibility protein (Fragment) (AHRD V1 ***- C7FE84_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
LocationChr9 : 22587073 .. 22587426 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

mRNA sequence

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Coding sequence (CDS)

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Protein sequence

MEMRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDSN
BLAST of Cla012990 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-25
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1

Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

BLAST of Cla012990 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1

Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

BLAST of Cla012990 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 1

Query: 11  VVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFN 70
           VV+ ++L LA+           W +HVVN LSN Q LLVHCKSKD+DLGEH L+ G+EF 
Sbjct: 13  VVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFA 72

Query: 71  WRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           W+FK NF+ TTLFWCYL+K +   + F  FW E
Sbjct: 73  WKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKE 105

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2R918_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1

Query: 9   QCVVLLLLLCLAVLEETKATE---LAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSI 68
           Q + + LL+  +  E   +     L  W +H VN LSNG+ILLVHCKSKDNDLG H L++
Sbjct: 15  QAIAITLLIDSSSCESNNSHHDPWLITWHVHTVNGLSNGEILLVHCKSKDNDLGIHNLTV 74

Query: 69  GSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAF 101
           G+EF+W+FK+NF+  TLFWCY+   N  H++ + F
Sbjct: 75  GTEFSWKFKLNFFGGTLFWCYMAHDN-FHATLDVF 108

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1

Query: 33  WQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNG 92
           W I+ VN LS  Q LLVHCKSKD+DLG H L++GSEF W+F+  F+  TLFWCY+   N 
Sbjct: 48  WHIYAVNGLSQDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDN- 107

Query: 93  LHSSFEAFWIESTSVRLYDMC 114
           LH+SF+AFW    +  LY++C
Sbjct: 108 LHASFKAFW---DNQALYNVC 124

BLAST of Cla012990 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 64/120 (53.33%), Postives = 90/120 (75.00%), Query Frame = 1

Query: 1   MEMRRMK--KQCVVLLLLLCLAV--LEETKATELAKWQIHVVNRLSNGQILLVHCKSKDN 60
           M ++ MK  ++ VVLL+++ + V  +E+ +   L KW +HV+N L+  Q LLVHCKSKDN
Sbjct: 1   MGVKNMKTTREMVVLLMVVLMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDN 60

Query: 61  DLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDS 117
           DLGEH +++GSE+NW F++N + TTLFWC L+KPNG H+SFEAFW+E TS+ LY  C +S
Sbjct: 61  DLGEHSVNVGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCLES 120

BLAST of Cla012990 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1

Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L   ++  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALARSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCY 115
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   CY
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGDQVRFDAFWVEKKTEWLRVKCY 111

BLAST of Cla012990 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1

Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LSNGQ L V CKSKD+DLG+  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALAHSKPLSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGHELKFDAFWVEKKTEWLRVKC 110

BLAST of Cla012990 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1

Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

BLAST of Cla012990 vs. NCBI nr
Match: gi|567902362|ref|XP_006443669.1| (hypothetical protein CICLE_v10022738mg [Citrus clementina])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1

Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K6N8_CUCSA7.7e-2554.46Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
V4VUI1_9ROSI2.5e-2348.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1[more]
V4TTV3_9ROSI3.6e-2253.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1[more]
A0A0D2R918_GOSRA6.3e-1948.42Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1[more]
A0A0D2U1W3_GOSRA5.4e-1855.56Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659124369|ref|XP_008462123.1|4.6e-3153.33PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo][more]
gi|778730341|ref|XP_011659760.1|2.0e-2654.90PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus][more]
gi|659116359|ref|XP_008458036.1|8.5e-2553.47PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo][more]
gi|778726822|ref|XP_004139670.2|1.1e-2454.46PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus][more]
gi|567902362|ref|XP_006443669.1|3.6e-2348.51hypothetical protein CICLE_v10022738mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012990Cla012990.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 34..113
score: 8.6
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 1..114
score: 5.8