Cla012990.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012990
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Self-incompatibility protein (Fragment) (AHRD V1 ***- C7FE84_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
Location	Chr9 : 22587073 .. 22587426 (+)
Sequence length	354

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

mRNA sequence

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Coding sequence (CDS)

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Protein sequence

MEMRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDSN

Homology

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-25
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 11  VVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFN 70
           VV+ ++L LA+           W +HVVN LSN Q LLVHCKSKD+DLGEH L+ G+EF 
Sbjct: 13  VVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFA 72

Query: 71  WRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           W+FK NF+ TTLFWCYL+K +   + F  FW E
Sbjct: 73  WKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKE 105

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2R918_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 9   QCVVLLLLLCLAVLEETKATE---LAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSI 68
           Q + + LL+  +  E   +     L  W +H VN LSNG+ILLVHCKSKDNDLG H L++
Sbjct: 15  QAIAITLLIDSSSCESNNSHHDPWLITWHVHTVNGLSNGEILLVHCKSKDNDLGIHNLTV 74

Query: 69  GSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAF 101
           G+EF+W+FK+NF+  TLFWCY+   N  H++ + F
Sbjct: 75  GTEFSWKFKLNFFGGTLFWCYMAHDN-FHATLDVF 108

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 33  WQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNG 92
           W I+ VN LS  Q LLVHCKSKD+DLG H L++GSEF W+F+  F+  TLFWCY+   N 
Sbjct: 48  WHIYAVNGLSQDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDN- 107

Query: 93  LHSSFEAFWIESTSVRLYDMC 114
           LH+SF+AFW    +  LY++C
Sbjct: 108 LHASFKAFW---DNQALYNVC 124

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 64/120 (53.33%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MEMRRMK--KQCVVLLLLLCLAV--LEETKATELAKWQIHVVNRLSNGQILLVHCKSKDN 60
           M ++ MK  ++ VVLL+++ + V  +E+ +   L KW +HV+N L+  Q LLVHCKSKDN
Sbjct: 1   MGVKNMKTTREMVVLLMVVLMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDN 60

Query: 61  DLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDS 117
           DLGEH +++GSE+NW F++N + TTLFWC L+KPNG H+SFEAFW+E TS+ LY  C +S
Sbjct: 61  DLGEHSVNVGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCLES 120

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L   ++  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALARSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCY 115
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   CY
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGDQVRFDAFWVEKKTEWLRVKCY 111

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LSNGQ L V CKSKD+DLG+  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALAHSKPLSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGHELKFDAFWVEKKTEWLRVKC 110

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|567902362|ref|XP_006443669.1| (hypothetical protein CICLE_v10022738mg [Citrus clementina])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

The following BLAST results are available for this feature:

BLAST of Cla012990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N8_CUCSA	7.7e-25	54.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1	[more]
V4VUI1_9ROSI	2.5e-23	48.51	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]
V4TTV3_9ROSI	3.6e-22	53.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
A0A0D2R918_GOSRA	6.3e-19	48.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1	[more]
A0A0D2U1W3_GOSRA	5.4e-18	55.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1	[more]

BLAST of Cla012990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124369\|ref\|XP_008462123.1\|	4.6e-31	53.33	PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo]	[more]
gi\|778730341\|ref\|XP_011659760.1\|	2.0e-26	54.90	PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus]	[more]
gi\|659116359\|ref\|XP_008458036.1\|	8.5e-25	53.47	PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo]	[more]
gi\|778726822\|ref\|XP_004139670.2\|	1.1e-24	54.46	PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus]	[more]
gi\|567902362\|ref\|XP_006443669.1\|	3.6e-23	48.51	hypothetical protein CICLE_v10022738mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla012990	Cla012990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla012990	Cla012990.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla012990.1.cds1	Cla012990.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 34..113 score: 8.6
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..114 score: 5.8