Cla012990 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012990
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Self-incompatibility protein (Fragment) (AHRD V1 ***- C7FE84_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
Location	Chr9 : 22587073 .. 22587426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

mRNA sequence

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Coding sequence (CDS)

ATGGAAATGAGGCGTATGAAAAAGCAGTGTGTCGTGTTGTTGCTACTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTACGGAGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTATTGGATCTGAATTCAATTGGAGGTTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACCTACAGAAGCCGAATGGACTACATTCATCATTTGAAGCCTTTTGGATTGAGAGCACATCGGTTCGGCTCTATGATATGTGCTACGATTCTAACTGA

Protein sequence

MEMRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDSN

Homology

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-25
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 11  VVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFN 70
           VV+ ++L LA+           W +HVVN LSN Q LLVHCKSKD+DLGEH L+ G+EF 
Sbjct: 13  VVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFA 72

Query: 71  WRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           W+FK NF+ TTLFWCYL+K +   + F  FW E
Sbjct: 73  WKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKE 105

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2R918_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 9   QCVVLLLLLCLAVLEETKATE---LAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSI 68
           Q + + LL+  +  E   +     L  W +H VN LSNG+ILLVHCKSKDNDLG H L++
Sbjct: 15  QAIAITLLIDSSSCESNNSHHDPWLITWHVHTVNGLSNGEILLVHCKSKDNDLGIHNLTV 74

Query: 69  GSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAF 101
           G+EF+W+FK+NF+  TLFWCY+   N  H++ + F
Sbjct: 75  GTEFSWKFKLNFFGGTLFWCYMAHDN-FHATLDVF 108

[Close]

BLAST of Cla012990 vs. TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 33  WQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNG 92
           W I+ VN LS  Q LLVHCKSKD+DLG H L++GSEF W+F+  F+  TLFWCY+   N 
Sbjct: 48  WHIYAVNGLSQDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDN- 107

Query: 93  LHSSFEAFWIESTSVRLYDMC 114
           LH+SF+AFW    +  LY++C
Sbjct: 108 LHASFKAFW---DNQALYNVC 124

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 64/120 (53.33%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MEMRRMK--KQCVVLLLLLCLAV--LEETKATELAKWQIHVVNRLSNGQILLVHCKSKDN 60
           M ++ MK  ++ VVLL+++ + V  +E+ +   L KW +HV+N L+  Q LLVHCKSKDN
Sbjct: 1   MGVKNMKTTREMVVLLMVVLMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDN 60

Query: 61  DLGEHKLSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCYDS 117
           DLGEH +++GSE+NW F++N + TTLFWC L+KPNG H+SFEAFW+E TS+ LY  C +S
Sbjct: 61  DLGEHSVNVGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCLES 120

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L   ++  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALARSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMCY 115
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   CY
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGDQVRFDAFWVEKKTEWLRVKCY 111

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LSNGQ L V CKSKD+DLG+  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALAHSKPLSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGHELKFDAFWVEKKTEWLRVKC 110

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 13  LLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHKLSIGSEFNWR 72
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 73  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVRLYDMC 114
           FKVN W+TTLFWCYL+KP G    FEAFW+E  +  L   C
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKC 110

[Close]

BLAST of Cla012990 vs. NCBI nr
Match: gi|567902362|ref|XP_006443669.1| (hypothetical protein CICLE_v10022738mg [Citrus clementina])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 3   MRRMKKQCVVLLLLLCLAVLEETKATELAKWQIHVVNRLSNGQILLVHCKSKDNDLGEHK 62
           M  ++   V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHK
Sbjct: 1   MSSLRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHK 60

Query: 63  LSIGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIE 104
           L+ G+E NW+FK NF+ TTLFWC+L+KP+   ++F+ FW E
Sbjct: 61  LTTGTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE 101

The following BLAST results are available for this feature:

BLAST of Cla012990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N8_CUCSA	7.7e-25	54.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1	[more]
V4VUI1_9ROSI	2.5e-23	48.51	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]
V4TTV3_9ROSI	3.6e-22	53.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
A0A0D2R918_GOSRA	6.3e-19	48.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1	[more]
A0A0D2U1W3_GOSRA	5.4e-18	55.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1	[more]

BLAST of Cla012990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124369\|ref\|XP_008462123.1\|	4.6e-31	53.33	PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo]	[more]
gi\|778730341\|ref\|XP_011659760.1\|	2.0e-26	54.90	PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus]	[more]
gi\|659116359\|ref\|XP_008458036.1\|	8.5e-25	53.47	PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo]	[more]
gi\|778726822\|ref\|XP_004139670.2\|	1.1e-24	54.46	PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus]	[more]
gi\|567902362\|ref\|XP_006443669.1\|	3.6e-23	48.51	hypothetical protein CICLE_v10022738mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012990	Cla012990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 34..113 score: 8.6
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..114 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012990	Cucurbita moschata (Rifu)	cmowmB503
Cla012990	Cucurbita moschata (Rifu)	cmowmB541
Cla012990	Wild cucumber (PI 183967)	cpiwmB107
Cla012990	Melon (DHL92) v3.5.1	mewmB087
Cla012990	Watermelon (Charleston Gray)	wcgwmB009
Cla012990	Cucumber (Chinese Long) v2	cuwmB102
Cla012990	Cucurbita pepo (Zucchini)	cpewmB274
Cla012990	Cucurbita pepo (Zucchini)	cpewmB686
Cla012990	Bottle gourd (USVL1VR-Ls)	lsiwmB044
Cla012990	Cucumber (Gy14) v2	cgybwmB100
Cla012990	Silver-seed gourd	carwmB0417
Cla012990	Silver-seed gourd	carwmB1054
Cla012990	Cucumber (Chinese Long) v3	cucwmB114
Cla012990	Watermelon (97103) v2	wmwmbB043
Cla012990	Wax gourd	wgowmB354
Cla012990	Cucumber (Gy14) v1	cgywmB580
Cla012990	Cucurbita maxima (Rimu)	cmawmB510
Cla012990	Cucurbita maxima (Rimu)	cmawmB549