CmoCh11G012580 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr11 : 8021411 .. 8021884 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCTTCATTTCTTGTCATCTTTTTCTTCCTCGGTTGTTCTTCCTATCATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTCGATACGGCCGTCATCCCCGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCTTGCTCGTTGAGGTATAATCCTAATTCATATTCAAAGTCATTTCTATTTATTTTCTAATATGCATTGCCTTCTATAGAAGGAAGCTGAAGTTCCAAGCGTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAAGAGTGAAGAGAAAGCAGCGAAGAGGGATGAGAAGAGCGCATGAAGAAATAAAA

mRNA sequence

GATCTTCATTTCTTGTCATCTTTTTCTTCCTCGGTTGTTCTTCCTATCATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTCGATACGGCCGTCATCCCCGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCTTGCTCGTTGAGAAGGAAGCTGAAGTTCCAAGCGTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAAGAGTGAAGAGAAAGCAGCGAAGAGGGATGAGAAGAGCGCATGAAGAAATAAAA

Coding sequence (CDS)

ATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTCGATACGGCCGTCATCCCCGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCTTGCTCGTTGAGAAGGAAGCTGAAGTTCCAAGCGTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAAGAGTGAAGAGAAAGCAGCGAAGAGGGATGAGAAGAGCGCATGA
Homology
[Close]
BLAST of CmoCh11G012580 vs. TrEMBL
Match: A0A0A0K3E6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G230950 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1 

Query: 1   MGACATKPKAKVDT-AVIPAPEPVD-DMVKNTEEVKVVEDEKRVDDVIDEKKKDDTEKVV 60
           MGACATKPK K D  A IPAPEP+D D+VKN EEVK VE+EK+ D   DEKKK++ EKVV
Sbjct: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKNNEEVKFVEEEKKSDQT-DEKKKENNEKVV 60

Query: 61  VEEAKPPSLDSLLVEKEA----EVPSVTKAEEQP-PKEAAAVAGAKEVKKSEEKAAKRDE 116
           V+E KPPSL SLLVEKEA    EV  + KAEE+P  KE AA     E+KKSEEK  ++DE
Sbjct: 61  VKEKKPPSLASLLVEKEAAPAVEVSGIPKAEEKPKAKEVAAPTIEAELKKSEEKPKEKDE 120

[Close]
BLAST of CmoCh11G012580 vs. NCBI nr
Match: gi|449444090|ref|XP_004139808.1| (PREDICTED: microtubule-associated protein 1B-like [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1 

Query: 1   MGACATKPKAKVDT-AVIPAPEPVD-DMVKNTEEVKVVEDEKRVDDVIDEKKKDDTEKVV 60
           MGACATKPK K D  A IPAPEP+D D+VKN EEVK VE+EK+ D   DEKKK++ EKVV
Sbjct: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKNNEEVKFVEEEKKSDQT-DEKKKENNEKVV 60

Query: 61  VEEAKPPSLDSLLVEKEA----EVPSVTKAEEQP-PKEAAAVAGAKEVKKSEEKAAKRDE 116
           V+E KPPSL SLLVEKEA    EV  + KAEE+P  KE AA     E+KKSEEK  ++DE
Sbjct: 61  VKEKKPPSLASLLVEKEAAPAVEVSGIPKAEEKPKAKEVAAPTIEAELKKSEEKPKEKDE 120

[Close]
BLAST of CmoCh11G012580 vs. NCBI nr
Match: gi|659092695|ref|XP_008447176.1| (PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1 

Query: 1   MGACATKPKAKVDT-AVIPAPEPVD-DMVKNTEEVKVVEDEKRVDDVIDEKKKDDTEKVV 60
           MGACATKPK K D  A IPAPEP+D D+VKN EE+KVVE+EK+VD   DEKKK+D EKV+
Sbjct: 1   MGACATKPKVKTDDLAAIPAPEPIDHDIVKNNEEIKVVEEEKKVDQT-DEKKKEDNEKVI 60

Query: 61  VEEAKPPSLDSLLVEKE-----AEVPSVTKAEEQPP-KEAAAVAGAKEVKKSEEKAAKRD 116
           VE+ K PSL SLLVEKE      EV  + KA+E+P  +E  A     E K+SEEK  +++
Sbjct: 61  VEKEKSPSLASLLVEKETAPPVVEVSCIPKADEKPKVEEVVAPTNEAEAKESEEKPKEKN 120

The following BLAST results are available for this feature:
BLAST of CmoCh11G012580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3E6_CUCSA2.0e-2063.93Uncharacterized protein OS=Cucumis sativus GN=Csa_7G230950 PE=4 SV=1[more]
BLAST of CmoCh11G012580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444090|ref|XP_004139808.1|2.8e-2063.93PREDICTED: microtubule-associated protein 1B-like [Cucumis sativus][more]
gi|659092695|ref|XP_008447176.1|2.6e-1858.54PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012580.1CmoCh11G012580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G012580CmaCh11G011820Cucurbita maxima (Rimu)cmacmoB119
CmoCh11G012580Cp4.1LG04g00140Cucurbita pepo (Zucchini)cmocpeB130
CmoCh11G012580Carg17004Silver-seed gourdcarcmoB0632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012580Cucurbita moschata (Rifu)cmocmoB048
CmoCh11G012580Cucumber (Gy14) v1cgycmoB0050
CmoCh11G012580Cucumber (Gy14) v1cgycmoB0051
CmoCh11G012580Cucurbita maxima (Rimu)cmacmoB079
CmoCh11G012580Wild cucumber (PI 183967)cmocpiB086
CmoCh11G012580Wild cucumber (PI 183967)cmocpiB099
CmoCh11G012580Cucumber (Chinese Long) v2cmocuB083
CmoCh11G012580Cucumber (Chinese Long) v2cmocuB096
CmoCh11G012580Melon (DHL92) v3.5.1cmomeB103
CmoCh11G012580Cucumber (Gy14) v2cgybcmoB036
CmoCh11G012580Cucumber (Gy14) v2cgybcmoB049
CmoCh11G012580Melon (DHL92) v3.6.1cmomedB111
CmoCh11G012580Cucumber (Chinese Long) v3cmocucB0097
CmoCh11G012580Cucumber (Chinese Long) v3cmocucB0109