Carg17004 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17004
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_061 : 1057374 .. 1057930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTAGATACGGCCGTCATCCCTGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCTTGCTCGTTGAGGTATAATCCTAATTCATATTCAAAGTCATTTCTATTTATTTTCTAATATGCATTGCCTTCTATAGAAGGAAGCTGAAGTTCCGAGCTTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAGTGAAGCGAAAGCAGCGAAGAAGGATGAGAAGAGCGCATGA

mRNA sequence

ATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTAGATACGGCCGTCATCCCTGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCTTGCTCGTTGAGAAGGAAGCTGAAGTTCCGAGCTTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAGTGAAGCGAAAGCAGCGAAGAAGGATGAGAAGAGCGCATGA

Coding sequence (CDS)

ATGGGTGCCTGTGCCACCAAGCCTAAGGCCAAGGTAGATACGGCCGTCATCCCTGCACCCGAGCCTGTCGACGACATGGTGAAGAACACCGAGGAAGTTAAGGTCGTGGAAGACGAGAAGAGGGTCGATGATGTAATTGATGAAAAGAAGAAGGACGACACCGAGAAAGTTGTCGTTGAGGAAGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTCCGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGCCAAGCCTACGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCGACAAGCCTCGGTCTCTCGACTCCTTGCTCGTTGAGAAGGAAGCTGAAGTTCCGAGCTTGACGAAGGCGGAGGAGCAGCCACCGAAGGAGGCGGCGGCAGTGGCAGGGGCGAAAGAAGTGAAGAGTGAAGCGAAAGCAGCGAAGAAGGATGAGAAGAGCGCATGA

Protein sequence

MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVEDEKRVDDVIDEKKKDDTEKVVVEEAKPPSLDSAKPPSLDSAKPTSLDSAKPTSLDSDKPRSLDSDKPRSLDSDKPRSLDSLLVEKEAEVPSLTKAEEQPPKEAAAVAGAKEVKSEAKAAKKDEKSA

Homology

[Close]

BLAST of Carg17004 vs. NCBI nr
Match: XP_022970143.1 (uncharacterized protein LOC111469128 [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 91/156 (58.33%), Postives = 96/156 (61.54%), Query Frame = 0


Query: 1   MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVEXXXXXXXXXXXXXXXXXXXXXXX 60
           MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVE                       
Sbjct: 1   MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVE----------------------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLV 120
                                         XXXXXXXXXXXXXXXXXXXXXXXXXXX LV
Sbjct: 61  ---DEKRVDGVIDEKDDTENVVVEEAKPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 120

Query: 121 EKEAEVPSLTKAEEQPPKEAAAVAGAKEVKSEAKAA 157
           EK+AEVPS+TKAEEQPPK  A VAGA+EVK   ++A
Sbjct: 121 EKQAEVPSVTKAEEQPPKGTAVVAGAEEVKKNERSA 130

[Close]

BLAST of Carg17004 vs. NCBI nr
Match: XP_022931727.1 (patellin-1-like [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKV 36
          MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKV
Sbjct: 1  MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKV 35

[Close]

BLAST of Carg17004 vs. NCBI nr
Match: XP_023531836.1 (coiled-coil domain-containing protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-09
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVE 38
          MGACATKPKAKVDTAVIPAPE VDDMVKNTEEVKVVE
Sbjct: 1  MGACATKPKAKVDTAVIPAPERVDDMVKNTEEVKVVE 37

The following BLAST results are available for this feature:

BLAST of Carg17004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970143.1	1.5e-12	58.33	uncharacterized protein LOC111469128 [Cucurbita maxima]	[more]
XP_022931727.1	3.6e-09	100.00	patellin-1-like [Cucurbita moschata]	[more]
XP_023531836.1	3.6e-09	97.30	coiled-coil domain-containing protein 8-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17004 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg17004 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17004 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17004-RA	Carg17004-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17004	CmaCh11G011820	Cucurbita maxima (Rimu)	carcmaB0651
Carg17004	CmoCh11G012580	Cucurbita moschata (Rifu)	carcmoB0632
Carg17004	Cp4.1LG04g00140	Cucurbita pepo (Zucchini)	carcpeB0657

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17004	Wild cucumber (PI 183967)	carcpiB0504
Carg17004	Cucumber (Chinese Long) v3	carcucB0501
Carg17004	Melon (DHL92) v3.5.1	carmeB0473
Carg17004	Melon (DHL92) v3.6.1	carmedB0477