CmoCh11G012450 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSplicing factor, arginine/serine-rich 12
LocationCmo_Chr11 : 7781946 .. 7785214 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCGCTCTGATCGATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGAACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGGTAACCTCAGCAACTTCAATAGTTTTTCTCCTATTATGCTTTTCCTTTGTTGTTTCTGATCTTTTGTTTCCTTGCTCCTTGTTTGATTGCTGCTGATTAGAGTTTGGATTGGGAGATTTAGGTTTTTAGAGGAACTCTGTTAAGCCTTTTCTGATTTTTTTTTTTTTTTTTTGGTTTCCCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTGGTTTCCCGATTTGCTTCTGGAAGTCATGCGATTTATAGCCCTTTCTGATTTGTTCTATTTTGGTTTTCCCGATCTCTTACAGGAAGTCATGCGATTTATGTAATCTTAGTTATGATAGGTTGTTAGTGATTATTGATCGGAAAGAGAACCTTAGCTCTTGGTTCAGAATTGAAATGTATGCCTTTTTCTGTTTAGAAAGCTAAGAATTTAGGACTCATCTTGTGTATTTCCTACTCTTTTAAAAAGAAGGACAGAAATGTGATCGCGTCATGTTTTTATGTTACATTTAAACTTTTCAATATTTATATATTTTCTTTAAATAACAATGATAAAATAATACTGTATGTTCTTGAAATAATAACCGAAACAAGAAATGAGATTCTGTTGTTTTTAAATTCGTAACAAATACAACGTTAGTAATATCTGTAATAAACGAGAAACAAAGAAACAAGAATTTAAATTTTGTTTTCTTCCCCCAAAATTTGTACACTGTGTTGGGTGCATTTGTTAGAAATGGGGACTGAGAAATATAGAATAGTTACTGAACCGTTTTATTTTTCAATGTTAGGAAACAAGTAAAAATGAAAACTTTACCAAGTGATGTAATTGCTTTCTGTTTCTTCATTGGAATTTATTTTATGTAATGGCTTAATTATGCTAGATGTACTTCATATTTTGGCTGGTTTCCTAATTTATACTTTCGAAGATCATGTTTTTCAGTGAGTGGTATGCTGGTTTCCTAGACAACTATTTTTTCATAGCACATCTCATGAACCTAAGATAGTTTTTACTTATCCTTGTATATACATGTAGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGTAGATGCTTTAAATAGTAATTTTTATCTTTGGATTTATGTGTTGGCTTTGTAGTTCCACTTGTGGATTTTCACCTTGTTATTGTCACTCTTTTTTGTGCATCTTTGTATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGGTAGACCACTTGCCTGTTTGTGTACTATTTTTCCCTTTGTTGTTGTTAATGTTGTACTTTCAATGAACTGAGAAATGTTATGGAAATCACCTCGCTGGCATCATGTCTTTTACCTGTATCTACCTCTAGGCACTTCAGAACATATAGTGATAAAGTAGATGTAACTTTTAACACATGTATTCAATGTTTTAGATTTTAATTCAGAAGAGGTGAGATGTAATTTTCGAGGTAGTATGATAAGCCTCAGTTTAAATTAAAATATAAATGAACATATTGTGATGAAGATTTTAAGAAGATATTTAAGTTTCAATCTAAAATGTTTTTTTGTCCTGTGTAGTAAAAGTATTAACAACCTGAATTACAATAACTCAATTGTGTAAAGAATAAGCATCAAATTAATATTTTTCTCCTAATCATTTCATGAGGTGTTAAGACTCCAAGCATCAGTGTGTTCAAATAGAGCGCAAGCCCTAATTCAGAAAAATAAATTATAAAAAAAAGTAGCGGAGCAAGCCTCATGTATGCTAGGCCTAACCACTTGCAATCTATAGAAAGCATAAGCATTGAGGCTAAAATGTTGAGCCTCTAAGAAAGACAAGCACGCAATCGTTAGACAAAAGATGAAAGTAATGATCTATTTGCCAAATTATCATAATTTTTTTAGTCATGCAATCTTTAGACTACATCTATGATTTGTTTCTGAATTGGATATAGTGTTAGACGTTTGTTTGACTATTTACTGATTGATTCTTTGAACTTGGAGTTGGGGTCTGTGGCATGATGATCGGGCTGTTGATTGATTTGCCTGCTGGTTTGTTGTGCGGATTTGTCCTGGCAATCGGAGTCGATTTATAGAAACAGCCGGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGGTTACCTTAACACCATTGTTTATTTTCAGTTCTCTTCTTTTTTGGCATCTCAAATGTCAAATTTACAGTTACTTCATGTATTTGCAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCCGCCTTTTCTTTCTATGTTTCGACATGTTATTGTTAAAACATCTTTGCCTTGAGTACATAGAATGTTGCTGCCATTGATAATTTAGTTTTCACTATTATTATTATTTTTGCAGATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAATGGGTTGGGTATCCTTGAAATGAAGGAAAGAGGCAAATGATAGAAGAATGGAATATTAGCTACTGCTGCATGAAAAAATCAGTACAACCAATAGCTGTGTTGAATAAGTTGTAGAGACATTCAAGCTTGTGAGCTTTCTTCTTCCCTTGATTGATGTTTTGACGCATATGGATTGAGATCTATTTTAATTATGAAAAGGAATTGATTTTATTTGATTGGTTGGGATGGAATGAATGATTGATTGGTTATTAGTTAAGATTAGATTATGGTAACATTAATCTTTGTATTTGCATAAATTATTGTGTTTTTTAGGATATACACGAGAGTGACTCACCCTTATCGAAAACTTGTGGGGAGTTTTTGATGTCAGTGAATTTCTTCAATAACTATGTGTAC

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCGCTCTGATCGATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGAACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGTAGATGCTTTAAATATTCCACTTGTGGATTTTCACCTTGTTATTGTCACTCTTTTTTGTGCATCTTTGTATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGGTAGACCACTTGCCTAAACAGCCGGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCCGCCTTTTCTTTCTATGTTTCGACATATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAATGGGTTGGGTATCCTTGAAATGAAGGAAAGAGGCAAATGATAGAAGAATGGAATATTAGCTACTGCTGCATGAAAAAATCAGTACAACCAATAGCTGTGTTGAATAAGTTGTAGAGACATTCAAGCTTGTGAGCTTTCTTCTTCCCTTGATTGATGTTTTGACGCATATGGATTGAGATCTATTTTAATTATGAAAAGGAATTGATTTTATTTGATTGGTTGGGATGGAATGAATGATTGATTGGTTATTAGTTAAGATTAGATTATGGTAACATTAATCTTTGTATTTGCATAAATTATTGTGTTTTTTAGGATATACACGAGAGTGACTCACCCTTATCGAAAACTTGTGGGGAGTTTTTGATGTCAGTGAATTTCTTCAATAACTATGTGTAC

Coding sequence (CDS)

ATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGAACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGTAGATGCTTTAAATATTCCACTTGTGGATTTTCACCTTGTTATTGTCACTCTTTTTTGTGCATCTTTGTATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGGTAGACCACTTGCCTAAACAGCCGGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCCGCCTTTTCTTTCTATGTTTCGACATATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAA
Homology
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BLAST of CmoCh11G012450 vs. TrEMBL
Match: A0A0A0LVZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569230 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 157/223 (70.40%), Postives = 168/223 (75.34%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60
           MAA+SS+A+  +SDSSSSSSRRRRRR+TRR+KDR+ LRIRKKSRSHSKR RRHRRSSS+S
Sbjct: 1   MAATSSAATSNSSDSSSSSSRRRRRRKTRRDKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFCAS 120
           LSS+DSESDYSR   SS+SEPE S RSKRHKKND TKK                      
Sbjct: 61  LSSTDSESDYSR---SSESEPETSSRSKRHKKNDRTKK---------------------- 120

Query: 121 LYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGK 180
             KERERS+S HHKRRKHKAKE     KQPEE SSSPVQLSKFLARE DDGTRRSAVSGK
Sbjct: 121 -DKERERSRSHHHKRRKHKAKE-----KQPEE-SSSPVQLSKFLAREKDDGTRRSAVSGK 179

Query: 181 KVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           K            ILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 181 K------------ILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

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BLAST of CmoCh11G012450 vs. TrEMBL
Match: A0A0D2STC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301900 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.7e-34
Identity = 132/229 (57.64%), Postives = 153/229 (66.81%), Query Frame = 1 

Query: 1   MAASSSSASPYTS-----DSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRR-HR 60
           MAASSSS + Y+S     D+SSS ++RRR R  RR++DR++L+I+KKSRS  KRRRR HR
Sbjct: 1   MAASSSSTTSYSSSDSSSDASSSHAKRRRHRSNRRDRDRDSLKIQKKSRSLGKRRRRKHR 60

Query: 61  RSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIV 120
           R SS+S SS DSES  SRS+SSS SE E S  SKRHKK+D  KK                
Sbjct: 61  RHSSDSYSSHDSES--SRSYSSSDSEHE-SSHSKRHKKSDRQKK---------------- 120

Query: 121 TLFCASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRR 180
                   K++ERSKS  HKR+KHK KE     KQ +ERSSSPVQLSKFL R+ DDG RR
Sbjct: 121 -------SKQKERSKSHRHKRQKHKLKE-----KQQDERSSSPVQLSKFLGRDKDDGARR 180

Query: 181 SAVSGKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           SAVSGKK            ILLKLDKSKEDK  E+KRNELLKFLN+SFD
Sbjct: 181 SAVSGKK------------ILLKLDKSKEDKEAESKRNELLKFLNASFD 186

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BLAST of CmoCh11G012450 vs. TrEMBL
Match: A0A0B0PHP2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_01011 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 132/229 (57.64%), Postives = 152/229 (66.38%), Query Frame = 1 

Query: 1   MAASSSSASPYTS-----DSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRR-HR 60
           MAASSSS + Y+S     DSSSS ++RRR R  RR++DR++L+IRKKSRS  KRRRR HR
Sbjct: 1   MAASSSSTTSYSSSDSSSDSSSSHAKRRRHRSNRRDRDRDSLKIRKKSRSLGKRRRRKHR 60

Query: 61  RSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIV 120
           R SS+S SS DS+S  SRS+SSS SE E S  SKRHKK+D  KK                
Sbjct: 61  RHSSDSYSSHDSDS--SRSYSSSDSEHE-SSHSKRHKKSDRQKK---------------- 120

Query: 121 TLFCASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRR 180
                   K++ERSKS  HKR+KHK KE     KQ +ERSSSPVQLSKFL  + DDG RR
Sbjct: 121 -------SKQKERSKSHRHKRQKHKLKE-----KQQDERSSSPVQLSKFLGHDKDDGARR 180

Query: 181 SAVSGKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           SAVSGKK            ILLKLDKSKEDK  E+KRNELLKFLN+SFD
Sbjct: 181 SAVSGKK------------ILLKLDKSKEDKEAESKRNELLKFLNASFD 186

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BLAST of CmoCh11G012450 vs. TrEMBL
Match: A0A0B0MI50_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10633 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32
Identity = 130/229 (56.77%), Postives = 154/229 (67.25%), Query Frame = 1 

Query: 1   MAASSSSASPYTS-----DSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRR-RHR 60
           MAASSSSA+ Y+S     D+SSS ++RRR R  RR++DR++L+IRKKSRS  KRRR +HR
Sbjct: 1   MAASSSSATSYSSSDSLSDTSSSHAKRRRHRSNRRDRDRDSLKIRKKSRSLGKRRRKKHR 60

Query: 61  RSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIV 120
           R SS+S SSSDS+S  SRS+SS  S+ E S  SKRHKK+   KK                
Sbjct: 61  RHSSDSYSSSDSDS--SRSNSSLDSDNE-SSHSKRHKKSGRQKK---------------- 120

Query: 121 TLFCASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRR 180
                   KE+ERSKS  H+ +K+K KE     KQ +ERSSSPVQLSKFL R+ DDGTRR
Sbjct: 121 -------SKEKERSKSYRHRLQKNKLKE-----KQQDERSSSPVQLSKFLGRDKDDGTRR 180

Query: 181 SAVSGKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           SAVSGKK            ILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 181 SAVSGKK------------ILLKLDKSKEDKAAESKRNELLKFLNASFD 186

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BLAST of CmoCh11G012450 vs. TrEMBL
Match: A0A0L9VD13_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g148100 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 128/228 (56.14%), Postives = 145/228 (63.60%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHS--KRRRRHRRSSS 60
           MAASSSS S   S   SS  RRRR  R RRE+D+++L+IRKK++S S  KRRRRH   SS
Sbjct: 1   MAASSSSLS---SSDVSSPHRRRRHHRHRRERDKDSLKIRKKTKSQSRGKRRRRHHHHSS 60

Query: 61  NSLS---SSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVT 120
           NS S   SS S SDYSRS SSS SE E S RSKRHK++D  KK                 
Sbjct: 61  NSDSDSHSSSSVSDYSRSESSSDSEREASHRSKRHKRSDRPKK----------------- 120

Query: 121 LFCASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRS 180
                  KE++RSKS HHKR+KHK KE     KQ +ER SSPVQLSKFL R+ DD  RRS
Sbjct: 121 ------NKEKDRSKSHHHKRQKHKVKE-----KQHDERRSSPVQLSKFLGRDKDDDVRRS 180

Query: 181 AVSGKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           AVSGKK            ILLKL+KSKEDK  E+KRNELL FLN+SFD
Sbjct: 181 AVSGKK------------ILLKLEKSKEDKVAESKRNELLNFLNASFD 185

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BLAST of CmoCh11G012450 vs. TAIR10
Match: AT5G27860.1 (AT5G27860.1 unknown protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-26
Identity = 109/225 (48.44%), Postives = 135/225 (60.00%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRR--RRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS+S   S  SS S RRR  RR   R ++DR++L++RKKSRS SK+RRR + SS 
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSD 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFC 120
           +        SD S S SSS+S      +S+RHKK++  KK                    
Sbjct: 61  S--------SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKA------------------- 120

Query: 121 ASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVS 180
               K++ERSKS  HKR K++ ++     K   E SS PV+LSKFL R+ DDG RRSAVS
Sbjct: 121 ----KDKERSKSHRHKRHKNRERK-----KGEGEGSSGPVKLSKFLNRDKDDGERRSAVS 177

Query: 181 GKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           GKK            ILLK+DKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 181 GKK------------ILLKVDKSKEDKAAESKRNELLKFLNASFD 177

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BLAST of CmoCh11G012450 vs. NCBI nr
Match: gi|659099443|ref|XP_008450603.1| (PREDICTED: probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.8e-55
Identity = 162/223 (72.65%), Postives = 171/223 (76.68%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60
           MAASSS+ +  +SDSSSSSSRRRRRRRTRREKDR+ LRIRKKSRSHSKR RRHRRSSS+S
Sbjct: 1   MAASSSATTSNSSDSSSSSSRRRRRRRTRREKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFCAS 120
           LSSSDSESDY+RS+SSS+SEPE S RSKRHKKND TKK                      
Sbjct: 61  LSSSDSESDYARSNSSSESEPETSSRSKRHKKNDRTKK---------------------- 120

Query: 121 LYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGK 180
             KERERS+S HHKRRKHKAKE     KQPEE SSSPVQLSKFLARE DDGTRRSAVSGK
Sbjct: 121 -DKERERSRSHHHKRRKHKAKE-----KQPEE-SSSPVQLSKFLAREKDDGTRRSAVSGK 180

Query: 181 KVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           K            ILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 181 K------------ILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

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BLAST of CmoCh11G012450 vs. NCBI nr
Match: gi|659099445|ref|XP_008450604.1| (PREDICTED: probable splicing factor, arginine/serine-rich 7 isoform X2 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 2.8e-53
Identity = 160/223 (71.75%), Postives = 168/223 (75.34%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60
           MAASSS+ +  +SDSSSSSSRRRRRRRTRREKDR+ LRIRKKSRSHSKR RRHRRSSS+S
Sbjct: 1   MAASSSATTSNSSDSSSSSSRRRRRRRTRREKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFCAS 120
           LSSSDSESDY+R   SS+SEPE S RSKRHKKND TKK                      
Sbjct: 61  LSSSDSESDYAR---SSESEPETSSRSKRHKKNDRTKK---------------------- 120

Query: 121 LYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGK 180
             KERERS+S HHKRRKHKAKE     KQPEE SSSPVQLSKFLARE DDGTRRSAVSGK
Sbjct: 121 -DKERERSRSHHHKRRKHKAKE-----KQPEE-SSSPVQLSKFLAREKDDGTRRSAVSGK 179

Query: 181 KVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           K            ILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 181 K------------ILLKLDKSKEDKAEENKRNELLKFLNSSFD 179

[Close]
BLAST of CmoCh11G012450 vs. NCBI nr
Match: gi|778662386|ref|XP_011659818.1| (PREDICTED: UPF0396 protein [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 5.3e-52
Identity = 157/223 (70.40%), Postives = 168/223 (75.34%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60
           MAA+SS+A+  +SDSSSSSSRRRRRR+TRR+KDR+ LRIRKKSRSHSKR RRHRRSSS+S
Sbjct: 1   MAATSSAATSNSSDSSSSSSRRRRRRKTRRDKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFCAS 120
           LSS+DSESDYSR   SS+SEPE S RSKRHKKND TKK                      
Sbjct: 61  LSSTDSESDYSR---SSESEPETSSRSKRHKKNDRTKK---------------------- 120

Query: 121 LYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGK 180
             KERERS+S HHKRRKHKAKE     KQPEE SSSPVQLSKFLARE DDGTRRSAVSGK
Sbjct: 121 -DKERERSRSHHHKRRKHKAKE-----KQPEE-SSSPVQLSKFLAREKDDGTRRSAVSGK 179

Query: 181 KVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           K            ILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 181 K------------ILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

[Close]
BLAST of CmoCh11G012450 vs. NCBI nr
Match: gi|1009116993|ref|XP_015875077.1| (PREDICTED: arginine and glutamate-rich protein 1 [Ziziphus jujuba])

HSP 1 Score: 166.8 bits (421), Expect = 4.4e-38
Identity = 140/232 (60.34%), Postives = 155/232 (66.81%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRR-------EKDRNALRIRKK-SRSHSKRRR- 60
           MAASSSSAS  + DSSSSS RR RRR + R       +KD++AL+IRKK SRSHSKRRR 
Sbjct: 1   MAASSSSASSDSYDSSSSSDRRSRRRHSSRRDRDKDKDKDKDALKIRKKTSRSHSKRRRK 60

Query: 61  RHRRSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHL 120
           RHR SSSNS  SS SESDYSRS SSS SEPE S RSKRHKKND  KKV+           
Sbjct: 61  RHRHSSSNSPPSS-SESDYSRSDSSSDSEPETSSRSKRHKKNDRQKKVE----------- 120

Query: 121 VIVTLFCASLYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDG 180
                       E++RSKS  HKR KHK KE     KQ +ERS+ PVQLSKFL R+ DDG
Sbjct: 121 ------------EKDRSKSHRHKRHKHKVKE-----KQQDERSAGPVQLSKFLGRDKDDG 180

Query: 181 TRRSAVSGKKVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
            RRSAVSGKK            ILLKL+K+KEDK  ENKRNELLKFLN+SFD
Sbjct: 181 VRRSAVSGKK------------ILLKLEKTKEDKLAENKRNELLKFLNASFD 191

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BLAST of CmoCh11G012450 vs. NCBI nr
Match: gi|1021524382|ref|XP_016205573.1| (PREDICTED: UPF0396 protein [Arachis ipaensis])

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 127/223 (56.95%), Postives = 146/223 (65.47%), Query Frame = 1 

Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60
           MAASSS +S   S SS  S RRRR  R+RR++D+ +L+I+KK++SHSKRRRRH  SS + 
Sbjct: 1   MAASSSLSS---SSSSDDSHRRRRHHRSRRDRDKESLKIQKKTKSHSKRRRRHHHSSDSD 60

Query: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKVDALNIPLVDFHLVIVTLFCAS 120
             SSDS SDYSRS  SS  E E S RSKRHKKND  KK                      
Sbjct: 61  SYSSDSVSDYSRS-ESSDCEHESSHRSKRHKKNDKPKK---------------------- 120

Query: 121 LYKERERSKSRHHKRRKHKAKEVDHLPKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGK 180
             KE++RSKS HHKR+KHK KE     K+  ERSSSPVQLSKFL R+ DDG RRSAVSGK
Sbjct: 121 -SKEKDRSKSHHHKRQKHKVKE-----KKNSERSSSPVQLSKFLGRDKDDGVRRSAVSGK 179

Query: 181 KVKDPPFLSMFRHILLKLDKSKEDKAEENKRNELLKFLNSSFD 223
           K            ILLKLDKSKEDKA E++RNELL FLN+SFD
Sbjct: 181 K------------ILLKLDKSKEDKAAESRRNELLNFLNASFD 179

The following BLAST results are available for this feature:
BLAST of CmoCh11G012450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVZ3_CUCSA3.7e-5270.40Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569230 PE=4 SV=1[more]
A0A0D2STC9_GOSRA7.7e-3457.64Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301900 PE=4 SV=1[more]
A0A0B0PHP2_GOSAR1.0e-3357.64Uncharacterized protein OS=Gossypium arboreum GN=F383_01011 PE=4 SV=1[more]
A0A0B0MI50_GOSAR5.6e-3256.77Uncharacterized protein OS=Gossypium arboreum GN=F383_10633 PE=4 SV=1[more]
A0A0L9VD13_PHAAN1.2e-3156.14Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g148100 PE=4 SV=1[more]
BLAST of CmoCh11G012450 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27860.12.4e-2648.44 unknown protein[more]
BLAST of CmoCh11G012450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099443|ref|XP_008450603.1|1.8e-5572.65PREDICTED: probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucumis ... [more]
gi|659099445|ref|XP_008450604.1|2.8e-5371.75PREDICTED: probable splicing factor, arginine/serine-rich 7 isoform X2 [Cucumis ... [more]
gi|778662386|ref|XP_011659818.1|5.3e-5270.40PREDICTED: UPF0396 protein [Cucumis sativus][more]
gi|1009116993|ref|XP_015875077.1|4.4e-3860.34PREDICTED: arginine and glutamate-rich protein 1 [Ziziphus jujuba][more]
gi|1021524382|ref|XP_016205573.1|1.7e-3456.95PREDICTED: UPF0396 protein [Arachis ipaensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016853 isomerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012450.1CmoCh11G012450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G012450CmaCh11G011930Cucurbita maxima (Rimu)cmacmoB119
CmoCh11G012450Csa1G569230Cucumber (Chinese Long) v2cmocuB094
CmoCh11G012450CSPI01G26280Wild cucumber (PI 183967)cmocpiB096
CmoCh11G012450Cp4.1LG04g02140Cucurbita pepo (Zucchini)cmocpeB130
CmoCh11G012450CsaV3_1G038640Cucumber (Chinese Long) v3cmocucB0107
CmoCh11G012450Cla97C03G067550Watermelon (97103) v2cmowmbB103
CmoCh11G012450Bhi02G001707Wax gourdcmowgoB0164
CmoCh11G012450CsGy1G025540Cucumber (Gy14) v2cgybcmoB043
CmoCh11G012450Carg16994Silver-seed gourdcarcmoB0632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012450Cucumber (Gy14) v1cgycmoB0520
CmoCh11G012450Melon (DHL92) v3.5.1cmomeB112
CmoCh11G012450Watermelon (Charleston Gray)cmowcgB103
CmoCh11G012450Watermelon (97103) v1cmowmB091
CmoCh11G012450Bottle gourd (USVL1VR-Ls)cmolsiB134
CmoCh11G012450Melon (DHL92) v3.6.1cmomedB121