CsGy1G025540 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTATATAATGTTTATTTAAAAAATGAAAAAGAAAGGTAATCTTCTTTACATTATATATGAAAAAGAAAAATTGGTGATCATCATTCTTAATCTTAATAACCTTACACCCAGGGTTTCCTAAACCTGTAGAGAACCTTACCCGCCGGCGCCGGTATCTTCCTCTTCCTCAAACTCAAACTCAATCAGTTTCTACTCATTCATAAATCTTTTAAGCTTTTCCTCTTCTTCTTTTTTTTGGTGTAATTTCGCTGTCACCTGCTCGATTTAGGGTTTCGTTTTGGTTTTTTGCGGTTTCGTTTTGGATTTTACTATGTTTGGAGGTTGTGGATCCAACAATTTGAGTCATAGGGAAGGATACTTGGCAACGATATAAATTGCTAGTCAAGTTTATAACTAATATTGACACTGATTTGATTTGTTTTGTTTGTACTGAATTTGTGTTGAGCTGGATGGATTCCTTTGATTTCTGAGTAATTTTTGTTTTTATTTTCAGATGATTTATATAGCCTCGCTGTAATTTGTGATATATTTGCTGATCAATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGGTAACCTCAGTAATTTGAATACTTCTTCTCTTATTATGATGTTTTCATACCTTTGCTGATGTTCATTAGAGTTTGAAACAGATAGGGTGATTTAGTTATTCTGAGTTCCTATCGGAAAAAAGATTTAATTTTTCTGAGTTTGTCATTTTTTAATGCTTTCTGTGGAACTCTGTTGAGAGCCTTATTTGATTTGTTCTTTTTTGGCTTTTCCTCTCTTATTGGAAGTCTTGTGATTTAATACGCTTATGATTAAGTTGTTTGTGAGAGTTTCCTGGAATGAGAACTTCATCGCCTGTTTCAGAATTCGAAATTTATGGATTTTTTTTATACAAAAAAGCTAAGAATTTGGGGCTCATCGTGTATTTCCTACTCTGGTACAAAAGAGGCATAAATGTGTTTGCCTCTTTTAGTCAATAAAAAATGGAAAATGAAAATTAAGAATGGGTTCTAAACACTTGTTTTTCTCAATAGTAATAAATAAGAAACAAAACCATTAGAATGGAAACTTTACCCCATAAACGACCATAAATTTCAAAAACAGAAAACTAAAAATGTAATAGTCATCAAACAGGCCTAATTTATAACCTAATTTATACTGTTCAAGATTATGTCTCAGTGAGCGATGTTACTGGGTTTTCTAGTCAATTATTTTTTGCAAAGCACATTTTATGTACCCAAGATAGTTCTAACCAGTTCTTGTATGTATACATGTTGAAGCAATAGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGTAGATGTTTTTATGTAAACATTTTTTCTATGTGGCTTTGTAGTTTCACTTGTGAATTTTCACCTTGCTATTGTTATTCTCTCTCTCTTTGCACCTTAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGGTAGACCACTTTCCTGTTTGTGGACTATTCCCCTCTCCTCCCACCTTTTTTCTCATAAATGTGTACTTTTGTTTCTTTTTGTTGCTTTTAATGCTGTGCTTTCGATGACCTTGGAAATGCCATTGAAATAACCTCTTTGTAGCGTGGTTTTTACCTGTATCTAAATCCTTTTGGCATATTACTTCAGAACTTGTTGTGATAAAGTCAATCTAGCTTACGCATGTATAAATTCACATAATATTATTCTTCTAATCATTGCATAAGGCATAAATAATCCAAGCATCATTGAGGCACAATCCTCATGTGTAATAGTCCTTAGCCACTTATAATCCAAAGAAGATATAAGCTTTCAGGCTAAAAGTTTTGAGTCAGTCAGGCAAACCATGCAATCATTAGACCAAAGCTGAAAGTATTGATCTATTTACCAAATTATCTTATTGTTTTTTGTCATGCAATATTTAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGGTTTCTAAATTGGATATGATCTGAGATATACTATGACTATTTACTGATTGGTTCTTTGAAATTGGAGTTGGGGTCTGTGGCATGATGATCGGGCTGTTGATTGACTTGCCTTGAATGGTTTGTTATGCGGATTTGTCCTGGCATTCGGAGTCGATGTATAGAAACAACCAGAGGAGAGTAGTAGCCCTGTGCAGCTGTCCAAGGTTCCCTTCACACCATTGTTTATTTTCAAATATCGTTCTTTCTCAACATCTCTTATCTAAATTTTGCAGTTGCTTCATCTGTTTAACAGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGGTGATAGATCCATCTCTTAGTTGTTTTTGCCCATGGTTTTCCAGTTCTTTTGGCATGGCTTAGAACAGTTTTTCCTTGACCAAAAGCCCTTGTCACTCGTACCCTTGCCAGGTCTAGGGTATTTAAGAATTACTTTGAAAAAGGTTTAGCAAAGTTTAATAGTTCTCGGTGAGAAGAGAACTACTTGTATAGTACTTTTGATTATGTAGTTCACTTTTTCATTTTAGTTATTATTATTTTGCAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGCGCCTGTGTCTGTGTTGGAAATGAAGGTAAGAGGCACTGTTAGCTGCTGCATGAAAAAAAATAGAGTTCTACCAAAAGTTGTGTGGTGATTATGTTGTAGAGACATTTTAAGCCTTTGAACTCTCTTCCCTTGATGTTTTGATGCCCATATGGATCAAGTTCTTGTTTTAATTCCTTATGGACAGGAGAAATTGAAATGAAAAATTATTTACTTTGTCTTATTTTATATTTTGATGAAATGGAATGGGAAAAACGATTGATTATTAGTATTTATGGTACAGTGATTGTTTATTTTTCTTATTTGCA GTATATAATGTTTATTTAAAAAATGAAAAAGAAAGGTAATCTTCTTTACATTATATATGAAAAAGAAAAATTGGTGATCATCATTCTTAATCTTAATAACCTTACACCCAGGGTTTCCTAAACCTGTAGAGAACCTTACCCGCCGGCGCCGATGATTTATATAGCCTCGCTGTAATTTGTGATATATTTGCTGATCAATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGCGCCTGTGTCTGTGTTGGAAATGAAGGTAAGAGGCACTGTTAGCTGCTGCATGAAAAAAAATAGAGTTCTACCAAAAGTTGTGTGGTGATTATGTTGTAGAGACATTTTAAGCCTTTGAACTCTCTTCCCTTGATGTTTTGATGCCCATATGGATCAAGTTCTTGTTTTAATTCCTTATGGACAGGAGAAATTGAAATGAAAAATTATTTACTTTGTCTTATTTTATATTTTGATGAAATGGAATGGGAAAAACGATTGATTATTAGTATTTATGGTACAGTGATTGTTTATTTTTCTTATTTGCA ATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAA MAATSSAATSNSSDSSSSSSRRRRRRKTRRDKDRDTLRIRKKSRSHSKRHRRHRRSSSDSLSSTDSESDYSRSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKETAWSTVCSVSGRFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_011659818.1 (PREDICTED: UPF0396 protein [Cucumis sativus] >KGN66045.1 hypothetical protein Csa_1G569230 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 7.3e-16 Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_008450603.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo]) HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15 Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_022136184.1 (serine/arginine-rich splicing factor 11 [Momordica charantia]) HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_016674838.1 (PREDICTED: NF-kappa-B-activating protein-like isoform X2 [Gossypium hirsutum] >XP_017626587.1 PREDICTED: NF-kappa-B-activating protein isoform X2 [Gossypium arboreum] >KHG01783.1 hypothetical protein F383_10633 [Gossypium arboreum]) HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_016674831.1 (PREDICTED: NF-kappa-B-activating protein-like isoform X1 [Gossypium hirsutum] >XP_017626586.1 PREDICTED: NF-kappa-B-activating protein isoform X1 [Gossypium arboreum]) HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TAIR10
Match: AT5G27860.1 (unknown protein) HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16 Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A0A0LVZ3|A0A0A0LVZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.8e-16 Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1S3BQ85|A0A1S3BQ85_CUCME (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15 Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A0B0MI50|A0A0B0MI50_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_10633 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1U8IER8|A0A1U8IER8_GOSHI (NF-kappa-B-activating protein-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107894124 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1U8I9D8|A0A1U8I9D8_GOSHI (NF-kappa-B-activating protein-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107894124 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |