CsGy1G025540 (gene) Cucumber (Gy14) v2

NameCsGy1G025540
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionhypothetical protein
LocationChr1 : 24442197 .. 24445397 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATATAATGTTTATTTAAAAAATGAAAAAGAAAGGTAATCTTCTTTACATTATATATGAAAAAGAAAAATTGGTGATCATCATTCTTAATCTTAATAACCTTACACCCAGGGTTTCCTAAACCTGTAGAGAACCTTACCCGCCGGCGCCGGTATCTTCCTCTTCCTCAAACTCAAACTCAATCAGTTTCTACTCATTCATAAATCTTTTAAGCTTTTCCTCTTCTTCTTTTTTTTGGTGTAATTTCGCTGTCACCTGCTCGATTTAGGGTTTCGTTTTGGTTTTTTGCGGTTTCGTTTTGGATTTTACTATGTTTGGAGGTTGTGGATCCAACAATTTGAGTCATAGGGAAGGATACTTGGCAACGATATAAATTGCTAGTCAAGTTTATAACTAATATTGACACTGATTTGATTTGTTTTGTTTGTACTGAATTTGTGTTGAGCTGGATGGATTCCTTTGATTTCTGAGTAATTTTTGTTTTTATTTTCAGATGATTTATATAGCCTCGCTGTAATTTGTGATATATTTGCTGATCAATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGGTAACCTCAGTAATTTGAATACTTCTTCTCTTATTATGATGTTTTCATACCTTTGCTGATGTTCATTAGAGTTTGAAACAGATAGGGTGATTTAGTTATTCTGAGTTCCTATCGGAAAAAAGATTTAATTTTTCTGAGTTTGTCATTTTTTAATGCTTTCTGTGGAACTCTGTTGAGAGCCTTATTTGATTTGTTCTTTTTTGGCTTTTCCTCTCTTATTGGAAGTCTTGTGATTTAATACGCTTATGATTAAGTTGTTTGTGAGAGTTTCCTGGAATGAGAACTTCATCGCCTGTTTCAGAATTCGAAATTTATGGATTTTTTTTATACAAAAAAGCTAAGAATTTGGGGCTCATCGTGTATTTCCTACTCTGGTACAAAAGAGGCATAAATGTGTTTGCCTCTTTTAGTCAATAAAAAATGGAAAATGAAAATTAAGAATGGGTTCTAAACACTTGTTTTTCTCAATAGTAATAAATAAGAAACAAAACCATTAGAATGGAAACTTTACCCCATAAACGACCATAAATTTCAAAAACAGAAAACTAAAAATGTAATAGTCATCAAACAGGCCTAATTTATAACCTAATTTATACTGTTCAAGATTATGTCTCAGTGAGCGATGTTACTGGGTTTTCTAGTCAATTATTTTTTGCAAAGCACATTTTATGTACCCAAGATAGTTCTAACCAGTTCTTGTATGTATACATGTTGAAGCAATAGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGTAGATGTTTTTATGTAAACATTTTTTCTATGTGGCTTTGTAGTTTCACTTGTGAATTTTCACCTTGCTATTGTTATTCTCTCTCTCTTTGCACCTTAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGGTAGACCACTTTCCTGTTTGTGGACTATTCCCCTCTCCTCCCACCTTTTTTCTCATAAATGTGTACTTTTGTTTCTTTTTGTTGCTTTTAATGCTGTGCTTTCGATGACCTTGGAAATGCCATTGAAATAACCTCTTTGTAGCGTGGTTTTTACCTGTATCTAAATCCTTTTGGCATATTACTTCAGAACTTGTTGTGATAAAGTCAATCTAGCTTACGCATGTATAAATTCACATAATATTATTCTTCTAATCATTGCATAAGGCATAAATAATCCAAGCATCATTGAGGCACAATCCTCATGTGTAATAGTCCTTAGCCACTTATAATCCAAAGAAGATATAAGCTTTCAGGCTAAAAGTTTTGAGTCAGTCAGGCAAACCATGCAATCATTAGACCAAAGCTGAAAGTATTGATCTATTTACCAAATTATCTTATTGTTTTTTGTCATGCAATATTTAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGGTTTCTAAATTGGATATGATCTGAGATATACTATGACTATTTACTGATTGGTTCTTTGAAATTGGAGTTGGGGTCTGTGGCATGATGATCGGGCTGTTGATTGACTTGCCTTGAATGGTTTGTTATGCGGATTTGTCCTGGCATTCGGAGTCGATGTATAGAAACAACCAGAGGAGAGTAGTAGCCCTGTGCAGCTGTCCAAGGTTCCCTTCACACCATTGTTTATTTTCAAATATCGTTCTTTCTCAACATCTCTTATCTAAATTTTGCAGTTGCTTCATCTGTTTAACAGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGGTGATAGATCCATCTCTTAGTTGTTTTTGCCCATGGTTTTCCAGTTCTTTTGGCATGGCTTAGAACAGTTTTTCCTTGACCAAAAGCCCTTGTCACTCGTACCCTTGCCAGGTCTAGGGTATTTAAGAATTACTTTGAAAAAGGTTTAGCAAAGTTTAATAGTTCTCGGTGAGAAGAGAACTACTTGTATAGTACTTTTGATTATGTAGTTCACTTTTTCATTTTAGTTATTATTATTTTGCAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGCGCCTGTGTCTGTGTTGGAAATGAAGGTAAGAGGCACTGTTAGCTGCTGCATGAAAAAAAATAGAGTTCTACCAAAAGTTGTGTGGTGATTATGTTGTAGAGACATTTTAAGCCTTTGAACTCTCTTCCCTTGATGTTTTGATGCCCATATGGATCAAGTTCTTGTTTTAATTCCTTATGGACAGGAGAAATTGAAATGAAAAATTATTTACTTTGTCTTATTTTATATTTTGATGAAATGGAATGGGAAAAACGATTGATTATTAGTATTTATGGTACAGTGATTGTTTATTTTTCTTATTTGCA

mRNA sequence

GTATATAATGTTTATTTAAAAAATGAAAAAGAAAGGTAATCTTCTTTACATTATATATGAAAAAGAAAAATTGGTGATCATCATTCTTAATCTTAATAACCTTACACCCAGGGTTTCCTAAACCTGTAGAGAACCTTACCCGCCGGCGCCGATGATTTATATAGCCTCGCTGTAATTTGTGATATATTTGCTGATCAATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGCGCCTGTGTCTGTGTTGGAAATGAAGGTAAGAGGCACTGTTAGCTGCTGCATGAAAAAAAATAGAGTTCTACCAAAAGTTGTGTGGTGATTATGTTGTAGAGACATTTTAAGCCTTTGAACTCTCTTCCCTTGATGTTTTGATGCCCATATGGATCAAGTTCTTGTTTTAATTCCTTATGGACAGGAGAAATTGAAATGAAAAATTATTTACTTTGTCTTATTTTATATTTTGATGAAATGGAATGGGAAAAACGATTGATTATTAGTATTTATGGTACAGTGATTGTTTATTTTTCTTATTTGCA

Coding sequence (CDS)

ATGGCGGCCACATCTTCGGCTGCGACATCCAATTCTTCTGATTCATCGTCTTCTTCTTCTCGCCGTCGTCGTCGCCGGAAAACTCGTCGTGATAAAGATCGGGACACGCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCCAAACGCCATCGTAGGCACCGCCGCTCCTCCTCCGACTCTCTCTCTTCCACCGACTCCGAATCTGATTACTCCCGCTCTTCTGAAAGTGAGCCTGAAACATCAAGCCGCTCAAAGCGGCATAAGAAGAATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAGGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGACTGCATGGTCTACAGTTTGTTCTGTTTCTGGAAGGTTTTTAGCACGGGAGAAGGATGATGGTACACGGCGAAGTGCCGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCTGAGGAAACCAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MAATSSAATSNSSDSSSSSSRRRRRRKTRRDKDRDTLRIRKKSRSHSKRHRRHRRSSSDSLSSTDSESDYSRSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKETAWSTVCSVSGRFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD
BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_011659818.1 (PREDICTED: UPF0396 protein [Cucumis sativus] >KGN66045.1 hypothetical protein Csa_1G569230 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 7.3e-16
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD
Sbjct: 130 KFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_008450603.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 133 KFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_022136184.1 (serine/arginine-rich splicing factor 11 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FLAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 134 KFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 183

BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_016674838.1 (PREDICTED: NF-kappa-B-activating protein-like isoform X2 [Gossypium hirsutum] >XP_017626587.1 PREDICTED: NF-kappa-B-activating protein isoform X2 [Gossypium arboreum] >KHG01783.1 hypothetical protein F383_10633 [Gossypium arboreum])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDGTRRSAVSGKKILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 137 KFLGRDKDDGTRRSAVSGKKILLKLDKSKEDKAAESKRNELLKFLNASFD 186

BLAST of CsGy1G025540 vs. NCBI nr
Match: XP_016674831.1 (PREDICTED: NF-kappa-B-activating protein-like isoform X1 [Gossypium hirsutum] >XP_017626586.1 PREDICTED: NF-kappa-B-activating protein isoform X1 [Gossypium arboreum])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDGTRRSAVSGKKILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 138 KFLGRDKDDGTRRSAVSGKKILLKLDKSKEDKAAESKRNELLKFLNASFD 187

BLAST of CsGy1G025540 vs. TAIR10
Match: AT5G27860.1 (unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 128 KFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A0A0LVZ3|A0A0A0LVZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.8e-16
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD
Sbjct: 130 KFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1S3BQ85|A0A1S3BQ85_CUCME (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 133 KFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A0B0MI50|A0A0B0MI50_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_10633 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDGTRRSAVSGKKILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 137 KFLGRDKDDGTRRSAVSGKKILLKLDKSKEDKAAESKRNELLKFLNASFD 186

BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1U8IER8|A0A1U8IER8_GOSHI (NF-kappa-B-activating protein-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107894124 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDGTRRSAVSGKKILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 137 KFLGRDKDDGTRRSAVSGKKILLKLDKSKEDKAAESKRNELLKFLNASFD 186

BLAST of CsGy1G025540 vs. TrEMBL
Match: tr|A0A1U8I9D8|A0A1U8I9D8_GOSHI (NF-kappa-B-activating protein-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107894124 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 128 RFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 178
           +FL R+KDDGTRRSAVSGKKILLKLDKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 138 KFLGRDKDDGTRRSAVSGKKILLKLDKSKEDKAAESKRNELLKFLNASFD 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011659818.17.3e-1698.00PREDICTED: UPF0396 protein [Cucumis sativus] >KGN66045.1 hypothetical protein Cs... [more]
XP_008450603.12.8e-1596.00PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo][more]
XP_022136184.11.1e-1494.00serine/arginine-rich splicing factor 11 [Momordica charantia][more]
XP_016674838.11.5e-1388.00PREDICTED: NF-kappa-B-activating protein-like isoform X2 [Gossypium hirsutum] >X... [more]
XP_016674831.11.5e-1388.00PREDICTED: NF-kappa-B-activating protein-like isoform X1 [Gossypium hirsutum] >X... [more]
Match NameE-valueIdentityDescription
AT5G27860.15.2e-1684.00unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LVZ3|A0A0A0LVZ3_CUCSA4.8e-1698.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1[more]
tr|A0A1S3BQ85|A0A1S3BQ85_CUCME1.8e-1596.00peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE... [more]
tr|A0A0B0MI50|A0A0B0MI50_GOSAR1.0e-1388.00Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_10633 PE=4 SV=1[more]
tr|A0A1U8IER8|A0A1U8IER8_GOSHI1.0e-1388.00NF-kappa-B-activating protein-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=L... [more]
tr|A0A1U8I9D8|A0A1U8I9D8_GOSHI1.0e-1388.00NF-kappa-B-activating protein-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=L... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G025540.1CsGy1G025540.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..56
NoneNo IPR availablePANTHERPTHR35760FAMILY NOT NAMEDcoord: 2..177

The following gene(s) are paralogous to this gene:

None