CmoCh08G006260 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGGTTTCCAAGCCTTAGAATTTGGACATTGGGTGTTTTTTTCTTCTAAAACTTTAAAATTTTTGTGTTCGAAAGTTTATATTTGTTTATTTCAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA
BLAST of CmoCh08G006260 vs. Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TrEMBL
Match: M5VRK7_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013206mg PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07 Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A0D2W8R7_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_013G232500 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07 Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A067GL58_CITSI (Histone H2A (Fragment) OS=Citrus sinensis GN=CISIN_1g046088mg PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07 Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TAIR10
Match: AT1G52740.1 (AT1G52740.1 histone H2A protein 9) HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of CmoCh08G006260 vs. TAIR10
Match: AT3G54560.1 (AT3G54560.1 histone H2A 11) HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06 Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|659122306|ref|XP_008461070.1| (PREDICTED: probable histone H2A variant 3 [Cucumis melo]) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|449436104|ref|XP_004135834.1| (PREDICTED: probable histone H2A variant 3 [Cucumis sativus]) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|702484189|ref|XP_010033915.1| (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis]) HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|595808309|ref|XP_007202745.1| (hypothetical protein PRUPE_ppa013206mg [Prunus persica]) HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07 Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|641861676|gb|KDO80364.1| (hypothetical protein CISIN_1g046088mg, partial [Citrus sinensis]) HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07 Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |