CmoCh08G006260.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006260.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 3816069 .. 3816514 (-)
Sequence length354
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGGTTTCCAAGCCTTAGAATTTGGACATTGGGTGTTTTTTTCTTCTAAAACTTTAAAATTTTTGTGTTCGAAAGTTTATATTTGTTTATTTCAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA

mRNA sequence

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA
Homology
[Close]
BLAST of CmoCh08G006260.1 vs. Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match: A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match: A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match: M5VRK7_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013206mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSNKDKDKKKPISRSSRAGLQ 37

[Close]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match: A0A0D2W8R7_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_013G232500 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKNSASNKDKDKKKPISRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match: A0A067GL58_CITSI (Histone H2A (Fragment) OS=Citrus sinensis GN=CISIN_1g046088mg PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 60 MSGKGAKGLIMGKASASNKDKDKKKPISRSSRAGLQ 95

[Close]
BLAST of CmoCh08G006260.1 vs. TAIR10
Match: AT1G52740.1 (AT1G52740.1 histone H2A protein 9)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. TAIR10
Match: AT3G54560.1 (AT3G54560.1 histone H2A 11)

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKS--ASNNKDKDKKKPVSRSSRAGLQ 37
          M+GKG KGL+  K+  A+ +KDKDKKKP+SRS+RAG+Q
Sbjct: 1  MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQ 38

[Close]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match: gi|659122306|ref|XP_008461070.1| (PREDICTED: probable histone H2A variant 3 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 76  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 111

[Close]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match: gi|449436104|ref|XP_004135834.1| (PREDICTED: probable histone H2A variant 3 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match: gi|702484189|ref|XP_010033915.1| (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match: gi|595808309|ref|XP_007202745.1| (hypothetical protein PRUPE_ppa013206mg [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSNKDKDKKKPISRSSRAGLQ 37

[Close]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match: gi|641861676|gb|KDO80364.1| (hypothetical protein CISIN_1g046088mg, partial [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 60 MSGKGAKGLIMGKASASNKDKDKKKPISRSSRAGLQ 95

The following BLAST results are available for this feature:
BLAST of CmoCh08G006260.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AV3_ARATH4.2e-0880.56Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1[more]
BLAST of CmoCh08G006260.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F6_CUCSA1.0e-0897.22Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1[more]
A0A059AJB9_EUCGR1.7e-0897.22Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1[more]
M5VRK7_PRUPE1.5e-0794.59Histone H2A OS=Prunus persica GN=PRUPE_ppa013206mg PE=3 SV=1[more]
A0A0D2W8R7_GOSRA2.5e-0786.11Histone H2A OS=Gossypium raimondii GN=B456_013G232500 PE=3 SV=1[more]
A0A067GL58_CITSI2.5e-0786.11Histone H2A (Fragment) OS=Citrus sinensis GN=CISIN_1g046088mg PE=3 SV=1[more]
BLAST of CmoCh08G006260.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52740.12.4e-0980.56 histone H2A protein 9[more]
AT3G54560.17.2e-0663.16 histone H2A 11[more]
BLAST of CmoCh08G006260.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122306|ref|XP_008461070.1|1.5e-0897.22PREDICTED: probable histone H2A variant 3 [Cucumis melo][more]
gi|449436104|ref|XP_004135834.1|1.5e-0897.22PREDICTED: probable histone H2A variant 3 [Cucumis sativus][more]
gi|702484189|ref|XP_010033915.1|2.5e-0897.22PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis][more]
gi|595808309|ref|XP_007202745.1|2.1e-0794.59hypothetical protein PRUPE_ppa013206mg [Prunus persica][more]
gi|641861676|gb|KDO80364.1|3.6e-0786.11hypothetical protein CISIN_1g046088mg, partial [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh08G006260CmoCh08G006260gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh08G006260.1CmoCh08G006260.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh08G006260.1.CDS.2CmoCh08G006260.1.CDS.2CDS
CmoCh08G006260.1.CDS.1CmoCh08G006260.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh08G006260.1.exon.2CmoCh08G006260.1.exon.2exon
CmoCh08G006260.1.exon.1CmoCh08G006260.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..36
score: 2.5
NoneNo IPR availablePANTHERPTHR23430:SF55HISTONE H2A VARIANT 3-RELATEDcoord: 1..36
score: 2.5