CmoCh08G006260 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 3816069 .. 3816514 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGGTTTCCAAGCCTTAGAATTTGGACATTGGGTGTTTTTTTCTTCTAAAACTTTAAAATTTTTGTGTTCGAAAGTTTATATTTGTTTATTTCAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA

mRNA sequence

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGTGTGA
Homology
[Close]
BLAST of CmoCh08G006260 vs. Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. TrEMBL
Match: M5VRK7_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013206mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSNKDKDKKKPISRSSRAGLQ 37

[Close]
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A0D2W8R7_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_013G232500 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKNSASNKDKDKKKPISRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. TrEMBL
Match: A0A067GL58_CITSI (Histone H2A (Fragment) OS=Citrus sinensis GN=CISIN_1g046088mg PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 60 MSGKGAKGLIMGKASASNKDKDKKKPISRSSRAGLQ 95

[Close]
BLAST of CmoCh08G006260 vs. TAIR10
Match: AT1G52740.1 (AT1G52740.1 histone H2A protein 9)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. TAIR10
Match: AT3G54560.1 (AT3G54560.1 histone H2A 11)

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKS--ASNNKDKDKKKPVSRSSRAGLQ 37
          M+GKG KGL+  K+  A+ +KDKDKKKP+SRS+RAG+Q
Sbjct: 1  MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQ 38

[Close]
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|659122306|ref|XP_008461070.1| (PREDICTED: probable histone H2A variant 3 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 76  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 111

[Close]
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|449436104|ref|XP_004135834.1| (PREDICTED: probable histone H2A variant 3 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|702484189|ref|XP_010033915.1| (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQ 36

[Close]
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|595808309|ref|XP_007202745.1| (hypothetical protein PRUPE_ppa013206mg [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGKSASN NKDKDKKKP+SRSSRAGLQ
Sbjct: 1  MSGKGAKGLIMGKSASNSNKDKDKKKPISRSSRAGLQ 37

[Close]
BLAST of CmoCh08G006260 vs. NCBI nr
Match: gi|641861676|gb|KDO80364.1| (hypothetical protein CISIN_1g046088mg, partial [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 1  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ 37
          MSGKGAKGLIMGK++++NKDKDKKKP+SRSSRAGLQ
Sbjct: 60 MSGKGAKGLIMGKASASNKDKDKKKPISRSSRAGLQ 95

The following BLAST results are available for this feature:
BLAST of CmoCh08G006260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AV3_ARATH4.2e-0880.56Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1[more]
BLAST of CmoCh08G006260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F6_CUCSA1.0e-0897.22Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1[more]
A0A059AJB9_EUCGR1.7e-0897.22Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1[more]
M5VRK7_PRUPE1.5e-0794.59Histone H2A OS=Prunus persica GN=PRUPE_ppa013206mg PE=3 SV=1[more]
A0A0D2W8R7_GOSRA2.5e-0786.11Histone H2A OS=Gossypium raimondii GN=B456_013G232500 PE=3 SV=1[more]
A0A067GL58_CITSI2.5e-0786.11Histone H2A (Fragment) OS=Citrus sinensis GN=CISIN_1g046088mg PE=3 SV=1[more]
BLAST of CmoCh08G006260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52740.12.4e-0980.56 histone H2A protein 9[more]
AT3G54560.17.2e-0663.16 histone H2A 11[more]
BLAST of CmoCh08G006260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122306|ref|XP_008461070.1|1.5e-0897.22PREDICTED: probable histone H2A variant 3 [Cucumis melo][more]
gi|449436104|ref|XP_004135834.1|1.5e-0897.22PREDICTED: probable histone H2A variant 3 [Cucumis sativus][more]
gi|702484189|ref|XP_010033915.1|2.5e-0897.22PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis][more]
gi|595808309|ref|XP_007202745.1|2.1e-0794.59hypothetical protein PRUPE_ppa013206mg [Prunus persica][more]
gi|641861676|gb|KDO80364.1|3.6e-0786.11hypothetical protein CISIN_1g046088mg, partial [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006260.1CmoCh08G006260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..36
score: 2.5
NoneNo IPR availablePANTHERPTHR23430:SF55HISTONE H2A VARIANT 3-RELATEDcoord: 1..36
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006260Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006260Cucurbita moschata (Rifu)cmocmoB312
CmoCh08G006260Cucumber (Gy14) v1cgycmoB0081
CmoCh08G006260Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006260Cucurbita maxima (Rimu)cmacmoB367
CmoCh08G006260Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G006260Wild cucumber (PI 183967)cmocpiB913
CmoCh08G006260Wild cucumber (PI 183967)cmocpiB914
CmoCh08G006260Wild cucumber (PI 183967)cmocpiB919
CmoCh08G006260Cucumber (Chinese Long) v2cmocuB900
CmoCh08G006260Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006260Cucumber (Chinese Long) v2cmocuB906
CmoCh08G006260Melon (DHL92) v3.5.1cmomeB808
CmoCh08G006260Melon (DHL92) v3.5.1cmomeB811
CmoCh08G006260Melon (DHL92) v3.5.1cmomeB816
CmoCh08G006260Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006260Watermelon (Charleston Gray)cmowcgB781
CmoCh08G006260Watermelon (Charleston Gray)cmowcgB786
CmoCh08G006260Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006260Watermelon (97103) v1cmowmB839
CmoCh08G006260Watermelon (97103) v1cmowmB844
CmoCh08G006260Cucurbita pepo (Zucchini)cmocpeB835
CmoCh08G006260Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006260Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006260Bottle gourd (USVL1VR-Ls)cmolsiB810
CmoCh08G006260Bottle gourd (USVL1VR-Ls)cmolsiB809
CmoCh08G006260Bottle gourd (USVL1VR-Ls)cmolsiB814
CmoCh08G006260Cucumber (Gy14) v2cgybcmoB955
CmoCh08G006260Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006260Cucumber (Gy14) v2cgybcmoB961
CmoCh08G006260Melon (DHL92) v3.6.1cmomedB911
CmoCh08G006260Melon (DHL92) v3.6.1cmomedB914
CmoCh08G006260Melon (DHL92) v3.6.1cmomedB921
CmoCh08G006260Silver-seed gourdcarcmoB0199
CmoCh08G006260Silver-seed gourdcarcmoB1378
CmoCh08G006260Silver-seed gourdcarcmoB1379
CmoCh08G006260Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G006260Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006260Cucumber (Chinese Long) v3cmocucB1072
CmoCh08G006260Watermelon (97103) v2cmowmbB917
CmoCh08G006260Watermelon (97103) v2cmowmbB912
CmoCh08G006260Wax gourdcmowgoB1100
CmoCh08G006260Wax gourdcmowgoB1125
CmoCh08G006260Wax gourdcmowgoB1130