CmoCh07G005560 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Polyadenylate-binding 2
Location	Cmo_Chr07 : 2499286 .. 2503225 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGTTCCCTCTACTCCCTCTCTCACAACCACGTAGATCACCGATCAAAACAGTTGTGTTGTAAAAGGTTGATTTCTGTGGTATCTGAATTTATTGTGTTCTGTGGTTACTGCAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGGTTTAACTCCTTCTCGAATTACTTCAAGACTATACGAGTCTTTAAATTTTGTATGAAGCTGCTGTAGCATCGTCAGTCTTGCTGATTAAAATATCTCACTACAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGTGAGATTAGAACTATAGTTTTTGTACTTCTTTTCTTGTTATTTCTTTTTACATTATTCTTCATATACTGCAGTTTTTAGTTGATCAAACGCTATTTCACAAGCACTATGATCTTGATGATATTTGTTTTGCAACCTGACAAATGCAGCCTCCACTACTAGCTAATTTTGTAGTTAATTTCTGTAGATGAGCATATCCTAGGCGAAGATTAGTTATATGTATGTGCAATTTATTCCTGCACAACTTTGCTGTGTATCTCAAAAGTAAATCTATCTAGGGTTTGGTGAAGTGATTTAAAGTTTCCTTTTCTTTCTATTGGTATTGGGGAGTTCTACCTGAACTTAAGTCAAAGATACTGCAAAAGCGCGTATTATTTAAGGCTTATTAGCGAAACATTGTAGGTATGCTATTTTGGTCTCTCTTGTGCATGTCATCGGGATTTTTTCTGCATTTAGTTCTAGCTTAAAGAGAACCATTGATTTAACCATTTTACTAGAAATCTTGCCCTGTATTTGTCTTGCTTCTTTATGTCTTTGTTATGTTGTAGGTGTGCATCTTCACAATGTCAGAGTAGATGTTTAACTTATTTGTCTCACTATGATGGCAGGGTCATTCATTTTACACCAAGTTCTCAGTATTTGCGCTGGGATGATTGCAATGTATTTCTGTTAGGAAAAATTACTTATCGTGTCATTATTATTGTATTCAAGCGGTAAAGGAAAGAAAATCTTATGTATGTGCGAAACAAATTGAAGGAAAAAAGTACAAAAAAGAAGAAAAAAATGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGAGAAAGAAAGAATGGAATATTCAAAAAAGAGAAAACAGATGGAAAAGAAATCTTTGTAGTTGATAGAGGGAACCGAGTAACAAGAAAAAAAAAAAGGAAAAGGAATGTGAAGATTGGGAAAATGACATGGGCATAGTTCTTTTGAACCAAAGAAGTAAATGCGAAGTGTGAAATTGAGTAGAGATGGATGGGAATATGAACTAAAGAAGCTTCAACATACATGAGGACATGATCACATCACTGGAGGCAGATCATTTGCATGCAATGTTAGTTGCAGGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTACATAATTTTGCTTTTCTTGCAGCTTTGATATCGATATCTTGGTTCTATTTATCTCCCTCGCAGATATTGCTTACTGAAAACTTGTCACTGACAATAATCTATTCTCAGTGGATCAGTTTCTGCTCCTTGGATAGCTTTAACAACATTAATTTCCTCCTTTTGATTTTTACTTCGCAAGGTTTTGTTTTATGAGTGCCTAGTGAAATAAGAGTTGATACGTTTCTAGCTTCCGTCTGTGCTTCAAATAAGTAGCCCATCTACGCAGAAGAGATGTTGAGTTTCCTTTTATGGAAGTTGCCCTCCTCGTGAAATGGGACCTTCGGCAGTTACCAATGATTTACTTGAAGTTAGTGCCAATTGAATGACAACTTGAGGTGGTGGAGAGTTAGAAGTAGTAGGTGAGATAGCTTTAGGATTTATGGAGATGGGTGATGAGAATCGCTCATGTAGTTTCTCCTATCTGAAGGAGATATACTTTAGTGCACATGAACAGTGTATTTTTAAGAGTAGACAGTGCTTGAAGTGAGGTGAAAATACTAGTCATACACTAAAATTAACTATTCTAATAGCATTACAGGTTTATACATGAGAAACTAGTCCCCAACAGAAGTTATATTATTTCTTGTATAAGTTTTCCTAGTTGCCTTCTTTTAACTAATAGAGTTGAGCTTATGTCCATTTGATCATTGACATATCTTGAACTAAATATATGAAGTTAAAAGAGCCTTCTGTGATTGTCACGAGTCATGATGTATTCAAGAATTACCTGAATATTGATTTCTTTTAAGACATGGTCATCGGTTATTAATGTTGGCGTACGTATCATAGACCAGTTCACTTACTTTTTAGTTGCTCTAGGAGCAGCTAACGCATAAAAATTGATTCATCTTCTGTTCTAGTTGTGACTTTTGAGGTTAAGGATCGCATGATCCTTAGATCCAGGTTAAAGGATAATCAATCAACATGTTTGAGCTATCTATTACTTCGAATGTAATGAAATATGCATAACTTTTGGGACAGTTCTCTTTGGTTACTGTATATACGCCTGGATTTCTATGCTAAATTAGGATGTAGTTTGTGTTTATAGAAAATTGCGTCTTAGATTAAATAATCATTGACAAATTGTAAGTGCAGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTAGTTCTTCGAGAAGGACGATAGATGCTTCTGTTCCTATGTTGTATTATTAACGCCGGTATCTGTAAACGTAGTTCAAATTCTAATAACTATGACCAATGGATTTAATATCATTCTATTCATCTCAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGTAAGTTTCCTGCATAACATATATTCACTTTTTATCACTGTTTGATACATGAATCACGTCCCTTACTTCATGCTGCAGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

mRNA sequence

GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

Coding sequence (CDS)

ATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAG

Homology

[Close]

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-85
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

[Close]

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 149/251 (59.36%), Postives = 174/251 (69.32%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFR 121
           EEEA ALREMQAK EK+MGA QDP+G V + E KEE DSRS++VGN              
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSGGVSAAE-KEEVDSRSIYVGN-------------- 124

Query: 122 NEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 181
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +
Sbjct: 125 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS 184

Query: 182 LLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTP 235
           L+LNESELHGRQ+KV  KRTN+PGM+Q F  R  P+   R   P VP  FY PY YG+ P
Sbjct: 185 LILNESELHGRQIKVSAKRTNVPGMRQ-FRGRGRPFRPMRGFMPGVP--FYPPYAYGRVP 227

[Close]

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-28
Identity = 90/198 (45.45%), Postives = 110/198 (55.56%), Query Frame = 1


Query: 25  ADDDAI----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEET 84
           +D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE  
Sbjct: 2   SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 61

Query: 85  DSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILT 144
           D++SV+VGN                        VDY+ TPEE+Q HF SCG+VNRVTIL 
Sbjct: 62  DAQSVYVGN------------------------VDYSVTPEELQSHFASCGSVNRVTILC 121

Query: 145 DKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQ----- 204
           DKF G PKGFAY+EF E   V  ALLLN S LH R LKV  KRTN+PGM +   +     
Sbjct: 122 DKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRG 166

Query: 205 RYNPYMGYRSRRPYVPPY 213
           R     GYR R     PY
Sbjct: 182 RGRGRGGYRGRARGFAPY 166

[Close]

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 99/242 (40.91%), Postives = 127/242 (52.48%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEM 61
           DEE  E   GE+       D T  D     EL+ +K R++EMEEEA  L+E+Q +VEK+M
Sbjct: 88  DEELEEEEPGELTG-----DQTIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQM 147

Query: 62  GAVQDPAGA---VVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYAC 121
                P  A   ++S E K E D+RS++VGN                        VDY  
Sbjct: 148 NMSPPPGNAGPVIMSVEEKMEADARSIYVGN------------------------VDYGA 207

Query: 122 TPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLK 181
           T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + E+V+ +L L+ES   GRQ+K
Sbjct: 208 TAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIK 267

Query: 182 VQQKRTNIPGMK---QYFPQ-RYNP-YMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYM 235
           V  KRTN PG+    + FP+ RY      Y SR  +   Y   P G     R R    Y 
Sbjct: 268 VVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARATSWYT 296

[Close]

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0A0KG83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.4e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CmoCh07G005560 vs. TrEMBL
Match: B9T0A6_RICCO (Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 8.3e-95
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

[Close]

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0D2QD31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.9e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0B0MLP3_GOSAR (Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.4e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A068TZ01_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.5e-93
Identity = 186/245 (75.92%), Postives = 197/245 (80.41%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE----------EGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP E           GDVDM+ ADDDA+KELDEMKKRLKEMEEEAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDLDPNSGDVDMSTADDDAVKELDEMKKRLKEMEEEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPA A  SQ +KEE DSRS+FVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPASAAASQANKEEVDSRSIFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQEALLLNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEQEAVQEALLLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY  +R+NPY+GYRSRRPYVPPYFYSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVMAKRTNVPGMKQYRGRRFNPYLGYRSRRPYVPPYFYSPYGYGKVPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-89
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-86
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

[Close]

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 145/288 (50.35%), Postives = 170/288 (59.03%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVV------------------------------- 121
           EEEA ALREMQAK EK+MGA Q     ++                               
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 122 ------SQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQH 181
                 S   KEE DSRS++VGN                        VDYACTPEEVQQH
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGN------------------------VDYACTPEEVQQH 184

Query: 182 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIP 235
           FQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTN+P
Sbjct: 185 FQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVP 244

[Close]

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-06
Identity = 35/125 (28.00%), Postives = 54/125 (43.20%), Query Frame = 1


Query: 55  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 114
           A V++E    +   G + +    E+  SR++FV N                        V
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVAN------------------------V 511

Query: 115 DYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHG 174
            +  T + + +HF   G V +  I+TD   GQP G AY+EF   EA + AL L+ +    
Sbjct: 512 HFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMS 552

Query: 175 RQLKV 179
           R LK+
Sbjct: 572 RILKI 552

[Close]

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|449451417|ref|XP_004143458.1| (PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 3.5e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|255581746|ref|XP_002531675.1| (PREDICTED: polyadenylate-binding protein 2 [Ricinus communis])

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

[Close]

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|823139902|ref|XP_012469813.1| (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|728811708|gb|KHG00394.1| (Polyadenylate-binding 2 [Gossypium arboreum])

HSP 1 Score: 353.2 bits (905), Expect = 3.5e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|802673497|ref|XP_012081610.1| (PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas])

HSP 1 Score: 350.1 bits (897), Expect = 2.9e-93
Identity = 186/242 (76.86%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EG       DVDM AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDVEGDMDPHNADVDMAAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A V+Q ++EE DSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAVNQANREEADSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPY+GYR RRPY PPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYIGYRFRRPYAPPYFYSPYGYGKVPRFRRPMRYMP 218

The following BLAST results are available for this feature:

BLAST of CmoCh07G005560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PABN3_ARATH	1.1e-87	71.67	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1	[more]
PABN2_ARATH	5.0e-85	70.08	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1	[more]
PABN1_ARATH	2.3e-66	59.36	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1	[more]
PAB2_SCHPO	7.4e-28	45.45	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
PAB2A_XENLA	1.6e-27	40.91	Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1	[more]

BLAST of CmoCh07G005560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG83_CUCSA	2.4e-102	83.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1	[more]
B9T0A6_RICCO	8.3e-95	77.69	Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1	[more]
A0A0D2QD31_GOSRA	1.9e-94	77.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1	[more]
A0A0B0MLP3_GOSAR	2.4e-94	77.14	Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1	[more]
A0A068TZ01_COFCA	3.5e-93	75.92	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1	[more]

BLAST of CmoCh07G005560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10350.1	6.1e-89	71.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	2.8e-86	70.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	1.3e-59	50.35	polyadenylate-binding protein 1	[more]
AT3G12640.1	3.8e-06	28.00	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh07G005560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451417\|ref\|XP_004143458.1\|	3.5e-102	83.90	PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus]	[more]
gi\|255581746\|ref\|XP_002531675.1\|	1.2e-94	77.69	PREDICTED: polyadenylate-binding protein 2 [Ricinus communis]	[more]
gi\|823139902\|ref\|XP_012469813.1\|	2.7e-94	77.55	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii]	[more]
gi\|728811708\|gb\|KHG00394.1\|	3.5e-94	77.14	Polyadenylate-binding 2 [Gossypium arboreum]	[more]
gi\|802673497\|ref\|XP_012081610.1\|	2.9e-93	76.86	PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008143	poly(A) binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005560.1	CmoCh07G005560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 114..177 score: 7.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..179 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 83..183 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 72..179 score: 2.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 114..206 score: 1.61
None	No IPR available	unknown	Coil	Coil	coord: 26..60 scor
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 3..21 score: 1.3E-20coord: 104..189 score: 1.3
None	No IPR available	PANTHER	PTHR24012:SF436	PABPN1 PROTEIN	coord: 104..189 score: 1.3E-20coord: 3..21 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G005560	Cucsa.104260	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G005560	CmaCh07G005530	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005560	Cla014132	Watermelon (97103) v1	cmowmB816
CmoCh07G005560	Csa6G499790	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005560	ClCG01G018630	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005560	CSPI06G30100	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005560	Lsi01G007850	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005560	CsaV3_6G045300	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005560	Cla97C01G018000	Watermelon (97103) v2	cmowmbB849
CmoCh07G005560	Bhi03G000890	Wax gourd	cmowgoB1065
CmoCh07G005560	CsGy6G029570	Cucumber (Gy14) v2	cgybcmoB843

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005560	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005560	Cucurbita moschata (Rifu)	cmocmoB163
CmoCh07G005560	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G005560	Cucumber (Gy14) v1	cgycmoB0464
CmoCh07G005560	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005560	Melon (DHL92) v3.5.1	cmomeB774
CmoCh07G005560	Watermelon (Charleston Gray)	cmowcgB776
CmoCh07G005560	Cucurbita pepo (Zucchini)	cmocpeB828
CmoCh07G005560	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005560	Cucurbita pepo (Zucchini)	cmocpeB813
CmoCh07G005560	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005560	Bottle gourd (USVL1VR-Ls)	cmolsiB793
CmoCh07G005560	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005560	Silver-seed gourd	carcmoB0554
CmoCh07G005560	Silver-seed gourd	carcmoB1029
CmoCh07G005560	Cucumber (Chinese Long) v3	cmocucB0993