CmoCh07G005560.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005560.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Polyadenylate-binding 2
Location	Cmo_Chr07 : 2499286 .. 2503225 (-)
Sequence length	1048

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGTTCCCTCTACTCCCTCTCTCACAACCACGTAGATCACCGATCAAAACAGTTGTGTTGTAAAAGGTTGATTTCTGTGGTATCTGAATTTATTGTGTTCTGTGGTTACTGCAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGGTTTAACTCCTTCTCGAATTACTTCAAGACTATACGAGTCTTTAAATTTTGTATGAAGCTGCTGTAGCATCGTCAGTCTTGCTGATTAAAATATCTCACTACAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGTGAGATTAGAACTATAGTTTTTGTACTTCTTTTCTTGTTATTTCTTTTTACATTATTCTTCATATACTGCAGTTTTTAGTTGATCAAACGCTATTTCACAAGCACTATGATCTTGATGATATTTGTTTTGCAACCTGACAAATGCAGCCTCCACTACTAGCTAATTTTGTAGTTAATTTCTGTAGATGAGCATATCCTAGGCGAAGATTAGTTATATGTATGTGCAATTTATTCCTGCACAACTTTGCTGTGTATCTCAAAAGTAAATCTATCTAGGGTTTGGTGAAGTGATTTAAAGTTTCCTTTTCTTTCTATTGGTATTGGGGAGTTCTACCTGAACTTAAGTCAAAGATACTGCAAAAGCGCGTATTATTTAAGGCTTATTAGCGAAACATTGTAGGTATGCTATTTTGGTCTCTCTTGTGCATGTCATCGGGATTTTTTCTGCATTTAGTTCTAGCTTAAAGAGAACCATTGATTTAACCATTTTACTAGAAATCTTGCCCTGTATTTGTCTTGCTTCTTTATGTCTTTGTTATGTTGTAGGTGTGCATCTTCACAATGTCAGAGTAGATGTTTAACTTATTTGTCTCACTATGATGGCAGGGTCATTCATTTTACACCAAGTTCTCAGTATTTGCGCTGGGATGATTGCAATGTATTTCTGTTAGGAAAAATTACTTATCGTGTCATTATTATTGTATTCAAGCGGTAAAGGAAAGAAAATCTTATGTATGTGCGAAACAAATTGAAGGAAAAAAGTACAAAAAAGAAGAAAAAAATGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGAGAAAGAAAGAATGGAATATTCAAAAAAGAGAAAACAGATGGAAAAGAAATCTTTGTAGTTGATAGAGGGAACCGAGTAACAAGAAAAAAAAAAAGGAAAAGGAATGTGAAGATTGGGAAAATGACATGGGCATAGTTCTTTTGAACCAAAGAAGTAAATGCGAAGTGTGAAATTGAGTAGAGATGGATGGGAATATGAACTAAAGAAGCTTCAACATACATGAGGACATGATCACATCACTGGAGGCAGATCATTTGCATGCAATGTTAGTTGCAGGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTACATAATTTTGCTTTTCTTGCAGCTTTGATATCGATATCTTGGTTCTATTTATCTCCCTCGCAGATATTGCTTACTGAAAACTTGTCACTGACAATAATCTATTCTCAGTGGATCAGTTTCTGCTCCTTGGATAGCTTTAACAACATTAATTTCCTCCTTTTGATTTTTACTTCGCAAGGTTTTGTTTTATGAGTGCCTAGTGAAATAAGAGTTGATACGTTTCTAGCTTCCGTCTGTGCTTCAAATAAGTAGCCCATCTACGCAGAAGAGATGTTGAGTTTCCTTTTATGGAAGTTGCCCTCCTCGTGAAATGGGACCTTCGGCAGTTACCAATGATTTACTTGAAGTTAGTGCCAATTGAATGACAACTTGAGGTGGTGGAGAGTTAGAAGTAGTAGGTGAGATAGCTTTAGGATTTATGGAGATGGGTGATGAGAATCGCTCATGTAGTTTCTCCTATCTGAAGGAGATATACTTTAGTGCACATGAACAGTGTATTTTTAAGAGTAGACAGTGCTTGAAGTGAGGTGAAAATACTAGTCATACACTAAAATTAACTATTCTAATAGCATTACAGGTTTATACATGAGAAACTAGTCCCCAACAGAAGTTATATTATTTCTTGTATAAGTTTTCCTAGTTGCCTTCTTTTAACTAATAGAGTTGAGCTTATGTCCATTTGATCATTGACATATCTTGAACTAAATATATGAAGTTAAAAGAGCCTTCTGTGATTGTCACGAGTCATGATGTATTCAAGAATTACCTGAATATTGATTTCTTTTAAGACATGGTCATCGGTTATTAATGTTGGCGTACGTATCATAGACCAGTTCACTTACTTTTTAGTTGCTCTAGGAGCAGCTAACGCATAAAAATTGATTCATCTTCTGTTCTAGTTGTGACTTTTGAGGTTAAGGATCGCATGATCCTTAGATCCAGGTTAAAGGATAATCAATCAACATGTTTGAGCTATCTATTACTTCGAATGTAATGAAATATGCATAACTTTTGGGACAGTTCTCTTTGGTTACTGTATATACGCCTGGATTTCTATGCTAAATTAGGATGTAGTTTGTGTTTATAGAAAATTGCGTCTTAGATTAAATAATCATTGACAAATTGTAAGTGCAGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTAGTTCTTCGAGAAGGACGATAGATGCTTCTGTTCCTATGTTGTATTATTAACGCCGGTATCTGTAAACGTAGTTCAAATTCTAATAACTATGACCAATGGATTTAATATCATTCTATTCATCTCAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGTAAGTTTCCTGCATAACATATATTCACTTTTTATCACTGTTTGATACATGAATCACGTCCCTTACTTCATGCTGCAGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

mRNA sequence

GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

Coding sequence (CDS)

ATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAG

Homology

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BLAST of CmoCh07G005560.1 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

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BLAST of CmoCh07G005560.1 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-85
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

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BLAST of CmoCh07G005560.1 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 149/251 (59.36%), Postives = 174/251 (69.32%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFR 121
           EEEA ALREMQAK EK+MGA QDP+G V + E KEE DSRS++VGN              
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSGGVSAAE-KEEVDSRSIYVGN-------------- 124

Query: 122 NEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 181
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +
Sbjct: 125 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS 184

Query: 182 LLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTP 235
           L+LNESELHGRQ+KV  KRTN+PGM+Q F  R  P+   R   P VP  FY PY YG+ P
Sbjct: 185 LILNESELHGRQIKVSAKRTNVPGMRQ-FRGRGRPFRPMRGFMPGVP--FYPPYAYGRVP 227

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BLAST of CmoCh07G005560.1 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-28
Identity = 90/198 (45.45%), Postives = 110/198 (55.56%), Query Frame = 1


Query: 25  ADDDAI----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEET 84
           +D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE  
Sbjct: 2   SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 61

Query: 85  DSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILT 144
           D++SV+VGN                        VDY+ TPEE+Q HF SCG+VNRVTIL 
Sbjct: 62  DAQSVYVGN------------------------VDYSVTPEELQSHFASCGSVNRVTILC 121

Query: 145 DKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQ----- 204
           DKF G PKGFAY+EF E   V  ALLLN S LH R LKV  KRTN+PGM +   +     
Sbjct: 122 DKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRG 166

Query: 205 RYNPYMGYRSRRPYVPPY 213
           R     GYR R     PY
Sbjct: 182 RGRGRGGYRGRARGFAPY 166

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BLAST of CmoCh07G005560.1 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 99/242 (40.91%), Postives = 127/242 (52.48%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEM 61
           DEE  E   GE+       D T  D     EL+ +K R++EMEEEA  L+E+Q +VEK+M
Sbjct: 88  DEELEEEEPGELTG-----DQTIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQM 147

Query: 62  GAVQDPAGA---VVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYAC 121
                P  A   ++S E K E D+RS++VGN                        VDY  
Sbjct: 148 NMSPPPGNAGPVIMSVEEKMEADARSIYVGN------------------------VDYGA 207

Query: 122 TPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLK 181
           T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + E+V+ +L L+ES   GRQ+K
Sbjct: 208 TAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIK 267

Query: 182 VQQKRTNIPGMK---QYFPQ-RYNP-YMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYM 235
           V  KRTN PG+    + FP+ RY      Y SR  +   Y   P G     R R    Y 
Sbjct: 268 VVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARATSWYT 296

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BLAST of CmoCh07G005560.1 vs. TrEMBL
Match: A0A0A0KG83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.4e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

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BLAST of CmoCh07G005560.1 vs. TrEMBL
Match: B9T0A6_RICCO (Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 8.3e-95
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

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BLAST of CmoCh07G005560.1 vs. TrEMBL
Match: A0A0D2QD31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.9e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

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BLAST of CmoCh07G005560.1 vs. TrEMBL
Match: A0A0B0MLP3_GOSAR (Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.4e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560.1 vs. TrEMBL
Match: A0A068TZ01_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.5e-93
Identity = 186/245 (75.92%), Postives = 197/245 (80.41%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE----------EGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP E           GDVDM+ ADDDA+KELDEMKKRLKEMEEEAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDLDPNSGDVDMSTADDDAVKELDEMKKRLKEMEEEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPA A  SQ +KEE DSRS+FVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPASAAASQANKEEVDSRSIFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQEALLLNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEQEAVQEALLLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY  +R+NPY+GYRSRRPYVPPYFYSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVMAKRTNVPGMKQYRGRRFNPYLGYRSRRPYVPPYFYSPYGYGKVPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560.1 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-89
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmoCh07G005560.1 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-86
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

[Close]

BLAST of CmoCh07G005560.1 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 145/288 (50.35%), Postives = 170/288 (59.03%), Query Frame = 1


Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVV------------------------------- 121
           EEEA ALREMQAK EK+MGA Q     ++                               
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 122 ------SQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQH 181
                 S   KEE DSRS++VGN                        VDYACTPEEVQQH
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGN------------------------VDYACTPEEVQQH 184

Query: 182 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIP 235
           FQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTN+P
Sbjct: 185 FQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVP 244

[Close]

BLAST of CmoCh07G005560.1 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-06
Identity = 35/125 (28.00%), Postives = 54/125 (43.20%), Query Frame = 1


Query: 55  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 114
           A V++E    +   G + +    E+  SR++FV N                        V
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVAN------------------------V 511

Query: 115 DYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHG 174
            +  T + + +HF   G V +  I+TD   GQP G AY+EF   EA + AL L+ +    
Sbjct: 512 HFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMS 552

Query: 175 RQLKV 179
           R LK+
Sbjct: 572 RILKI 552

[Close]

BLAST of CmoCh07G005560.1 vs. NCBI nr
Match: gi|449451417|ref|XP_004143458.1| (PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 3.5e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CmoCh07G005560.1 vs. NCBI nr
Match: gi|255581746|ref|XP_002531675.1| (PREDICTED: polyadenylate-binding protein 2 [Ricinus communis])

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

[Close]

BLAST of CmoCh07G005560.1 vs. NCBI nr
Match: gi|823139902|ref|XP_012469813.1| (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560.1 vs. NCBI nr
Match: gi|728811708|gb|KHG00394.1| (Polyadenylate-binding 2 [Gossypium arboreum])

HSP 1 Score: 353.2 bits (905), Expect = 3.5e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

[Close]

BLAST of CmoCh07G005560.1 vs. NCBI nr
Match: gi|802673497|ref|XP_012081610.1| (PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas])

HSP 1 Score: 350.1 bits (897), Expect = 2.9e-93
Identity = 186/242 (76.86%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MDEEEHEVYGGEIPVEEG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EG       DVDM AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDVEGDMDPHNADVDMAAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A V+Q ++EE DSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAVNQANREEADSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPY+GYR RRPY PPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYIGYRFRRPYAPPYFYSPYGYGKVPRFRRPMRYMP 218

The following BLAST results are available for this feature:

BLAST of CmoCh07G005560.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PABN3_ARATH	1.1e-87	71.67	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1	[more]
PABN2_ARATH	5.0e-85	70.08	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1	[more]
PABN1_ARATH	2.3e-66	59.36	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1	[more]
PAB2_SCHPO	7.4e-28	45.45	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
PAB2A_XENLA	1.6e-27	40.91	Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1	[more]

BLAST of CmoCh07G005560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG83_CUCSA	2.4e-102	83.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1	[more]
B9T0A6_RICCO	8.3e-95	77.69	Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1	[more]
A0A0D2QD31_GOSRA	1.9e-94	77.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1	[more]
A0A0B0MLP3_GOSAR	2.4e-94	77.14	Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1	[more]
A0A068TZ01_COFCA	3.5e-93	75.92	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1	[more]

BLAST of CmoCh07G005560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10350.1	6.1e-89	71.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	2.8e-86	70.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	1.3e-59	50.35	polyadenylate-binding protein 1	[more]
AT3G12640.1	3.8e-06	28.00	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh07G005560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451417\|ref\|XP_004143458.1\|	3.5e-102	83.90	PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus]	[more]
gi\|255581746\|ref\|XP_002531675.1\|	1.2e-94	77.69	PREDICTED: polyadenylate-binding protein 2 [Ricinus communis]	[more]
gi\|823139902\|ref\|XP_012469813.1\|	2.7e-94	77.55	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii]	[more]
gi\|728811708\|gb\|KHG00394.1\|	3.5e-94	77.14	Polyadenylate-binding 2 [Gossypium arboreum]	[more]
gi\|802673497\|ref\|XP_012081610.1\|	2.9e-93	76.86	PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh07G005560	CmoCh07G005560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh07G005560.1	CmoCh07G005560.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G005560.1.three_prime_UTR.1	CmoCh07G005560.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G005560.1.CDS.7	CmoCh07G005560.1.CDS.7	CDS
CmoCh07G005560.1.CDS.6	CmoCh07G005560.1.CDS.6	CDS
CmoCh07G005560.1.CDS.5	CmoCh07G005560.1.CDS.5	CDS
CmoCh07G005560.1.CDS.4	CmoCh07G005560.1.CDS.4	CDS
CmoCh07G005560.1.CDS.3	CmoCh07G005560.1.CDS.3	CDS
CmoCh07G005560.1.CDS.2	CmoCh07G005560.1.CDS.2	CDS
CmoCh07G005560.1.CDS.1	CmoCh07G005560.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G005560.1.five_prime_UTR.1	CmoCh07G005560.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G005560.1.exon.7	CmoCh07G005560.1.exon.7	exon
CmoCh07G005560.1.exon.6	CmoCh07G005560.1.exon.6	exon
CmoCh07G005560.1.exon.5	CmoCh07G005560.1.exon.5	exon
CmoCh07G005560.1.exon.4	CmoCh07G005560.1.exon.4	exon
CmoCh07G005560.1.exon.3	CmoCh07G005560.1.exon.3	exon
CmoCh07G005560.1.exon.2	CmoCh07G005560.1.exon.2	exon
CmoCh07G005560.1.exon.1	CmoCh07G005560.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 114..177 score: 7.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..179 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 83..183 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 72..179 score: 2.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 114..206 score: 1.61
None	No IPR available	unknown	Coil	Coil	coord: 26..60 scor
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 3..21 score: 1.3E-20coord: 104..189 score: 1.3
None	No IPR available	PANTHER	PTHR24012:SF436	PABPN1 PROTEIN	coord: 104..189 score: 1.3E-20coord: 3..21 score: 1.3