CmoCh07G005560 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G005560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPolyadenylate-binding 2
LocationCmo_Chr07 : 2499286 .. 2503225 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGTTCCCTCTACTCCCTCTCTCACAACCACGTAGATCACCGATCAAAACAGTTGTGTTGTAAAAGGTTGATTTCTGTGGTATCTGAATTTATTGTGTTCTGTGGTTACTGCAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGGTTTAACTCCTTCTCGAATTACTTCAAGACTATACGAGTCTTTAAATTTTGTATGAAGCTGCTGTAGCATCGTCAGTCTTGCTGATTAAAATATCTCACTACAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGTGAGATTAGAACTATAGTTTTTGTACTTCTTTTCTTGTTATTTCTTTTTACATTATTCTTCATATACTGCAGTTTTTAGTTGATCAAACGCTATTTCACAAGCACTATGATCTTGATGATATTTGTTTTGCAACCTGACAAATGCAGCCTCCACTACTAGCTAATTTTGTAGTTAATTTCTGTAGATGAGCATATCCTAGGCGAAGATTAGTTATATGTATGTGCAATTTATTCCTGCACAACTTTGCTGTGTATCTCAAAAGTAAATCTATCTAGGGTTTGGTGAAGTGATTTAAAGTTTCCTTTTCTTTCTATTGGTATTGGGGAGTTCTACCTGAACTTAAGTCAAAGATACTGCAAAAGCGCGTATTATTTAAGGCTTATTAGCGAAACATTGTAGGTATGCTATTTTGGTCTCTCTTGTGCATGTCATCGGGATTTTTTCTGCATTTAGTTCTAGCTTAAAGAGAACCATTGATTTAACCATTTTACTAGAAATCTTGCCCTGTATTTGTCTTGCTTCTTTATGTCTTTGTTATGTTGTAGGTGTGCATCTTCACAATGTCAGAGTAGATGTTTAACTTATTTGTCTCACTATGATGGCAGGGTCATTCATTTTACACCAAGTTCTCAGTATTTGCGCTGGGATGATTGCAATGTATTTCTGTTAGGAAAAATTACTTATCGTGTCATTATTATTGTATTCAAGCGGTAAAGGAAAGAAAATCTTATGTATGTGCGAAACAAATTGAAGGAAAAAAGTACAAAAAAGAAGAAAAAAATGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGAGAAAGAAAGAATGGAATATTCAAAAAAGAGAAAACAGATGGAAAAGAAATCTTTGTAGTTGATAGAGGGAACCGAGTAACAAGAAAAAAAAAAAGGAAAAGGAATGTGAAGATTGGGAAAATGACATGGGCATAGTTCTTTTGAACCAAAGAAGTAAATGCGAAGTGTGAAATTGAGTAGAGATGGATGGGAATATGAACTAAAGAAGCTTCAACATACATGAGGACATGATCACATCACTGGAGGCAGATCATTTGCATGCAATGTTAGTTGCAGGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTACATAATTTTGCTTTTCTTGCAGCTTTGATATCGATATCTTGGTTCTATTTATCTCCCTCGCAGATATTGCTTACTGAAAACTTGTCACTGACAATAATCTATTCTCAGTGGATCAGTTTCTGCTCCTTGGATAGCTTTAACAACATTAATTTCCTCCTTTTGATTTTTACTTCGCAAGGTTTTGTTTTATGAGTGCCTAGTGAAATAAGAGTTGATACGTTTCTAGCTTCCGTCTGTGCTTCAAATAAGTAGCCCATCTACGCAGAAGAGATGTTGAGTTTCCTTTTATGGAAGTTGCCCTCCTCGTGAAATGGGACCTTCGGCAGTTACCAATGATTTACTTGAAGTTAGTGCCAATTGAATGACAACTTGAGGTGGTGGAGAGTTAGAAGTAGTAGGTGAGATAGCTTTAGGATTTATGGAGATGGGTGATGAGAATCGCTCATGTAGTTTCTCCTATCTGAAGGAGATATACTTTAGTGCACATGAACAGTGTATTTTTAAGAGTAGACAGTGCTTGAAGTGAGGTGAAAATACTAGTCATACACTAAAATTAACTATTCTAATAGCATTACAGGTTTATACATGAGAAACTAGTCCCCAACAGAAGTTATATTATTTCTTGTATAAGTTTTCCTAGTTGCCTTCTTTTAACTAATAGAGTTGAGCTTATGTCCATTTGATCATTGACATATCTTGAACTAAATATATGAAGTTAAAAGAGCCTTCTGTGATTGTCACGAGTCATGATGTATTCAAGAATTACCTGAATATTGATTTCTTTTAAGACATGGTCATCGGTTATTAATGTTGGCGTACGTATCATAGACCAGTTCACTTACTTTTTAGTTGCTCTAGGAGCAGCTAACGCATAAAAATTGATTCATCTTCTGTTCTAGTTGTGACTTTTGAGGTTAAGGATCGCATGATCCTTAGATCCAGGTTAAAGGATAATCAATCAACATGTTTGAGCTATCTATTACTTCGAATGTAATGAAATATGCATAACTTTTGGGACAGTTCTCTTTGGTTACTGTATATACGCCTGGATTTCTATGCTAAATTAGGATGTAGTTTGTGTTTATAGAAAATTGCGTCTTAGATTAAATAATCATTGACAAATTGTAAGTGCAGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTAGTTCTTCGAGAAGGACGATAGATGCTTCTGTTCCTATGTTGTATTATTAACGCCGGTATCTGTAAACGTAGTTCAAATTCTAATAACTATGACCAATGGATTTAATATCATTCTATTCATCTCAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGTAAGTTTCCTGCATAACATATATTCACTTTTTATCACTGTTTGATACATGAATCACGTCCCTTACTTCATGCTGCAGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

mRNA sequence

GGTTGATTACCCTATATCTTATATAACTCATTCCACCTGTTCAGGCGAAGGCTGTGATAGGTACACTACACGAGGAAGGACGGAGATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAGGAGGGCATTGCCCATAACTAGACTGCCATATGAATCTATATTTATGACTTCACTTCGATTTAGAGCCTATAGAACTATGGACTTGATTATCTTTAGCCATTCGATGTCGAATTATATCAATGATCTAATGTATGATATACGGTAATATCCAAACTTTTTGTATGATGATTTGGCTGTGATATCCAAACTTTTTAGCAACTAACTCTTTAGCTTTTCCGTAGAGTAGATTTTCTGGAATTTCTACTTTTTAGCAAC

Coding sequence (CDS)

ATGGATGAAGAGGAGCACGAGGTTTACGGTGGAGAGATCCCGGTCGAAGAGGGTGATGTTGACATGACTGCCGCCGATGACGACGCCATCAAGGAGCTAGACGAGATGAAGAAGCGACTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAGATGCAGGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCCGGTGCGGTTGTAAGTCAAGAAAGCAAGGAGGAGACAGATTCGCGATCCGTGTTTGTTGGCAACGGCATTGTTGCTGCTGGGAATGATGGTAACTTATGCTTCAGAAATGAGGGCTATTTAACTGTCCTTGCGAGGGTTGATTATGCATGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACCATTCTTACAGATAAATTTGGTCAACCCAAGGGCTTCGCTTATGTGGAGTTCCTTGAAGCCGAGGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGGACTAATATTCCTGGGATGAAGCAGTATTTCCCTCAGCGTTACAATCCCTACATGGGTTATCGATCCAGGAGGCCATATGTACCCCCGTATTTCTACTCACCATATGGATATGGGAAGACTCCCCGTTACCGAAGGCCCATGCGATACATGCCATACTACTAG
BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-85
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 149/251 (59.36%), Postives = 174/251 (69.32%), Query Frame = 1

Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFR 121
           EEEA ALREMQAK EK+MGA QDP+G V + E KEE DSRS++VGN              
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSGGVSAAE-KEEVDSRSIYVGN-------------- 124

Query: 122 NEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 181
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +
Sbjct: 125 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS 184

Query: 182 LLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTP 235
           L+LNESELHGRQ+KV  KRTN+PGM+Q F  R  P+   R   P VP  FY PY YG+ P
Sbjct: 185 LILNESELHGRQIKVSAKRTNVPGMRQ-FRGRGRPFRPMRGFMPGVP--FYPPYAYGRVP 227

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-28
Identity = 90/198 (45.45%), Postives = 110/198 (55.56%), Query Frame = 1

Query: 25  ADDDAI----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGAVVSQESKEET 84
           +D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE  
Sbjct: 2   SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 61

Query: 85  DSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQHFQSCGTVNRVTILT 144
           D++SV+VGN                        VDY+ TPEE+Q HF SCG+VNRVTIL 
Sbjct: 62  DAQSVYVGN------------------------VDYSVTPEELQSHFASCGSVNRVTILC 121

Query: 145 DKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQ----- 204
           DKF G PKGFAY+EF E   V  ALLLN S LH R LKV  KRTN+PGM +   +     
Sbjct: 122 DKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRG 166

Query: 205 RYNPYMGYRSRRPYVPPY 213
           R     GYR R     PY
Sbjct: 182 RGRGRGGYRGRARGFAPY 166

BLAST of CmoCh07G005560 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 99/242 (40.91%), Postives = 127/242 (52.48%), Query Frame = 1

Query: 2   DEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEM 61
           DEE  E   GE+       D T  D     EL+ +K R++EMEEEA  L+E+Q +VEK+M
Sbjct: 88  DEELEEEEPGELTG-----DQTIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQM 147

Query: 62  GAVQDPAGA---VVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYAC 121
                P  A   ++S E K E D+RS++VGN                        VDY  
Sbjct: 148 NMSPPPGNAGPVIMSVEEKMEADARSIYVGN------------------------VDYGA 207

Query: 122 TPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLK 181
           T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + E+V+ +L L+ES   GRQ+K
Sbjct: 208 TAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIK 267

Query: 182 VQQKRTNIPGMK---QYFPQ-RYNP-YMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYM 235
           V  KRTN PG+    + FP+ RY      Y SR  +   Y   P G     R R    Y 
Sbjct: 268 VVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARATSWYT 296

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0A0KG83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.4e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

BLAST of CmoCh07G005560 vs. TrEMBL
Match: B9T0A6_RICCO (Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 8.3e-95
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0D2QD31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.9e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A0B0MLP3_GOSAR (Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.4e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

BLAST of CmoCh07G005560 vs. TrEMBL
Match: A0A068TZ01_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.5e-93
Identity = 186/245 (75.92%), Postives = 197/245 (80.41%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVE----------EGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP E           GDVDM+ ADDDA+KELDEMKKRLKEMEEEAAAL
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDLDPNSGDVDMSTADDDAVKELDEMKKRLKEMEEEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPA A  SQ +KEE DSRS+FVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPASAAASQANKEEVDSRSIFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQEALLLNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEQEAVQEALLLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY  +R+NPY+GYRSRRPYVPPYFYSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVMAKRTNVPGMKQYRGRRFNPYLGYRSRRPYVPPYFYSPYGYGKVPRFRRPMR 221

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-89
Identity = 172/240 (71.67%), Postives = 188/240 (78.33%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIP------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           M+EEEHEVYGGEIP      V + D+DM+AAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 120
           AKVEKEMGA QDPA    +QE KEE D+RSV+VGN                        V
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------V 120

Query: 121 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGR 180
           DYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAVQEAL LNESELHGR
Sbjct: 121 DYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 180

Query: 181 QLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMPY 235
           QLKV  KRTN+PGMKQY P R+NP MGYR RRP+VPPYFYSPYGYGK PR+RRPMRYMPY
Sbjct: 181 QLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-86
Identity = 171/244 (70.08%), Postives = 188/244 (77.05%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIP----------VEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           M+EEEHEVYGGEIP              D+DM AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGA QDPA    +Q  KEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 235
           LHGRQLKV QKRTN+PG+KQ+  +R+NPYMGYR RRP++ PY YSPYGYGK PR+RRPMR
Sbjct: 181 LHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMR 219

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 145/288 (50.35%), Postives = 170/288 (59.03%), Query Frame = 1

Query: 2   DEEEHEVYGGEIPVEE-GDVDM-----------TAADDDAI------KELDEMKKRLKEM 61
           DE+EHEVYGGEIP EE G++D             AA D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGAVV------------------------------- 121
           EEEA ALREMQAK EK+MGA Q     ++                               
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 122 ------SQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTPEEVQQH 181
                 S   KEE DSRS++VGN                        VDYACTPEEVQQH
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGN------------------------VDYACTPEEVQQH 184

Query: 182 FQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIP 235
           FQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTN+P
Sbjct: 185 FQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVP 244

BLAST of CmoCh07G005560 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-06
Identity = 35/125 (28.00%), Postives = 54/125 (43.20%), Query Frame = 1

Query: 55  AKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARV 114
           A V++E    +   G + +    E+  SR++FV N                        V
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVAN------------------------V 511

Query: 115 DYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHG 174
            +  T + + +HF   G V +  I+TD   GQP G AY+EF   EA + AL L+ +    
Sbjct: 512 HFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMS 552

Query: 175 RQLKV 179
           R LK+
Sbjct: 572 RILKI 552

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|449451417|ref|XP_004143458.1| (PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 3.5e-102
Identity = 198/236 (83.90%), Postives = 207/236 (87.71%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLARVDYACTP 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGN                        VDYACTP
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGN------------------------VDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQ 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQ
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQ 180

Query: 181 KRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYGKTPRYRRPMRYMPYY 236
           KRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYGKTPR+RRPMRYMPYY
Sbjct: 181 KRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|255581746|ref|XP_002531675.1| (PREDICTED: polyadenylate-binding protein 2 [Ricinus communis])

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 188/242 (77.69%), Postives = 199/242 (82.23%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVEEGDV-------DMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EGD+       DM+AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDMEGDIDPHNVDMDMSAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A  +Q +KEETDSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPYMGYR RRPYVPPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMP 218

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|823139902|ref|XP_012469813.1| (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 190/245 (77.55%), Postives = 202/245 (82.45%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPYVPPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYVPPYFYSPYGFGKIPRFRRPMR 221

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|728811708|gb|KHG00394.1| (Polyadenylate-binding 2 [Gossypium arboreum])

HSP 1 Score: 353.2 bits (905), Expect = 3.5e-94
Identity = 189/245 (77.14%), Postives = 202/245 (82.45%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVE---EG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAAL 60
           MDEEEHEVYGGEIP E   EG       DVDM+AAD+DA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MDEEEHEVYGGEIPDEGEMEGELDPQNADVDMSAADEDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTV 120
           REMQAKVEKEMGAVQDPAGA  +Q SKEE DSRSVFVGN                     
Sbjct: 61  REMQAKVEKEMGAVQDPAGATANQASKEEADSRSVFVGN--------------------- 120

Query: 121 LARVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESE 180
              VDYACTPEEVQQHFQSCGTVNRVTILTDK+GQPKGFAYVEFLEAEAVQEAL+LNESE
Sbjct: 121 ---VDYACTPEEVQQHFQSCGTVNRVTILTDKYGQPKGFAYVEFLEAEAVQEALVLNESE 180

Query: 181 LHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMR 236
           LHGRQLKV  KRTN+PGMKQY P+R+NPYMGYRSRRPY+PPYFYSPYG+GK PR+RRPMR
Sbjct: 181 LHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRSRRPYIPPYFYSPYGFGKIPRFRRPMR 221

BLAST of CmoCh07G005560 vs. NCBI nr
Match: gi|802673497|ref|XP_012081610.1| (PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas])

HSP 1 Score: 350.1 bits (897), Expect = 2.9e-93
Identity = 186/242 (76.86%), Postives = 197/242 (81.40%), Query Frame = 1

Query: 1   MDEEEHEVYGGEIPVEEG-------DVDMTAADDDAIKELDEMKKRLKEMEEEAAALREM 60
           M+EEEHEVYGGEIP  EG       DVDM AADDDA+KELDEMKKRLKEMEEEAAALREM
Sbjct: 1   MEEEEHEVYGGEIPDVEGDMDPHNADVDMAAADDDAVKELDEMKKRLKEMEEEAAALREM 60

Query: 61  QAKVEKEMGAVQDPAGAVVSQESKEETDSRSVFVGNGIVAAGNDGNLCFRNEGYLTVLAR 120
           QAKVEKEMGAVQDPA A V+Q ++EE DSRSVFVGN                        
Sbjct: 61  QAKVEKEMGAVQDPASAAVNQANREEADSRSVFVGN------------------------ 120

Query: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 180
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE EA+QEALLLNESELHG
Sbjct: 121 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHG 180

Query: 181 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGYGKTPRYRRPMRYMP 236
           RQLKV  KRTN+PGMKQY P+R+NPY+GYR RRPY PPYFYSPYGYGK PR+RRPMRYMP
Sbjct: 181 RQLKVLPKRTNVPGMKQYRPRRFNPYIGYRFRRPYAPPYFYSPYGYGKVPRFRRPMRYMP 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PABN3_ARATH1.1e-8771.67Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1[more]
PABN2_ARATH5.0e-8570.08Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1[more]
PABN1_ARATH2.3e-6659.36Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1[more]
PAB2_SCHPO7.4e-2845.45Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
PAB2A_XENLA1.6e-2740.91Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KG83_CUCSA2.4e-10283.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499790 PE=4 SV=1[more]
B9T0A6_RICCO8.3e-9577.69Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1[more]
A0A0D2QD31_GOSRA1.9e-9477.55Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040800 PE=4 SV=1[more]
A0A0B0MLP3_GOSAR2.4e-9477.14Polyadenylate-binding 2 OS=Gossypium arboreum GN=F383_19031 PE=4 SV=1[more]
A0A068TZ01_COFCA3.5e-9375.92Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036569001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G10350.16.1e-8971.67 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G65260.12.8e-8670.08 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G51120.21.3e-5950.35 polyadenylate-binding protein 1[more]
AT3G12640.13.8e-0628.00 RNA binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
gi|449451417|ref|XP_004143458.1|3.5e-10283.90PREDICTED: polyadenylate-binding protein 3-like isoform X1 [Cucumis sativus][more]
gi|255581746|ref|XP_002531675.1|1.2e-9477.69PREDICTED: polyadenylate-binding protein 2 [Ricinus communis][more]
gi|823139902|ref|XP_012469813.1|2.7e-9477.55PREDICTED: polyadenylate-binding protein 2 isoform X1 [Gossypium raimondii][more]
gi|728811708|gb|KHG00394.1|3.5e-9477.14Polyadenylate-binding 2 [Gossypium arboreum][more]
gi|802673497|ref|XP_012081610.1|2.9e-9376.86PREDICTED: polyadenylate-binding protein 2 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008143 poly(A) binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G005560.1CmoCh07G005560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 114..177
score: 7.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 109..179
score: 1.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 83..183
score: 14
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 72..179
score: 2.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 114..206
score: 1.61
NoneNo IPR availableunknownCoilCoilcoord: 26..60
scor
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 3..21
score: 1.3E-20coord: 104..189
score: 1.3
NoneNo IPR availablePANTHERPTHR24012:SF436PABPN1 PROTEINcoord: 104..189
score: 1.3E-20coord: 3..21
score: 1.3

The following gene(s) are paralogous to this gene:

None