CmoCh01G017920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein isoform 4
Location	Cmo_Chr01 : 13208682 .. 13211220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGTGGCTCGGTGTAAGGTAGGCGGGGGAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGGAGCAGAACAGGCGATCAAGCCATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGGTACTTTTCTCTTTTTGAGCCCTAGCTCAACGACCTCCTGTATTTTTTTGTTTCATTCCACTCGATATCGGCACGAACTTGCATTGTTTAGAATTGGAGTTACATTTGCGTTAGGTGTTCTCAGATTGTACTGTTTTGGCTGGAAGAATCTTGCGATTATGGAGTGAAAATTAACTCGATCAACTAAATCATCTTAAGAAAAATAATAAGAAATGAAAAGAAGCGTGTGGCCAGTTTCACTTGTACTAGGAGTGATGTCATTTTACGAAGCTGAACGATCAGTTTTCTTGGACTTGATGCATTAGGAGGATGTTTGGATGAGGAGCCGTGGAGTTAACCATGTTCGTTGCTGCTCGCACTGATCGATGATGACTATAGTATGTTAATTTGCTAGGTATTTTTGTATAGACGACGTAGCCGCAGCGTGTTGAGTCATTGATAGGAGGCAATTGCAAAGTCAGCTTCCTCACTGCTTCATTTGAGATTCACGAAAAATCTTCGCAAATTCTCTGTTTCATTAGAATCATTCTATATAAAATTTCTCTCCTCCTTGTTTTTTCATAATAATATGTAATCTGCAAACATAACTAATTTTTTGAGTCTAGCTTGAAAGTCTTTGGCGCTAAATGATTGGCACTTGATCAGTCAGTCTGCGTGCAAACATCATACTTGAAACTGACGTCCATTGTTGGCACTTGCAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAAGTAAGAATTTCATCTTAGTACAGAACATATTTACTTTATGAGAGTGCTTTACTTGACTTGTAGCTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTGTCTTTTTTTTTTTTTTTTTACTATTTCTTCTGTCTATCCAACTTTATCTACTTCCACCGTTGCTTAGGGTGCCGGCAGCATCCCATATGATTTGGGCTTCATTTGAAACTTAAAACAAATATTTTATGTCATTATAGTCAAAGAAAATAGAACATAAATTGCAATAGACAGAACTATGGTCATGTATCCTTTTTCTTTTTGTCATATCTTAACTTGAGTTGAAGATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAGTAAGTTATCAGTTTCTCTTTACTTTGAACTATGGAGGCATGTTTTCCCATGATAAGACCTTCAATTGTAATTAACAACTGCACGCCCTCTATGCTCAGATTTAATGGGGCCATTTTCTTCTGTTATCTGAGTTACATTGTCTACTCAGTGTATTCCTTTTGTTAAATTGAGTATTGAACTGCAGAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGGTATTGTGTAATATATTCCTCGTTGCAATGGAAAGTCTTTAGGGCTTCTTATGGTGTATTGCTTGGTACTTAAAGTTCTTGATCTAGTAATTAGCCAAGTATATATGGCACTACAATTACCGCCATTGACATTATTTGTGAACCAACACTCTAGAAGAACTAAGACAACTCTTAAGATGTTCCATATTATAAAGGAACAGCTATTACTTTAGATAATCTAATGTGTGATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCCGATTCCCTAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGTTTACCATCGAACCAGGATGACAGGCGATGAATACATAAGTTAAGCAACACTTTCCTGATTTTTAAGGGCTTTGTAGATCCTGTGGAATAGTAAAGCTTATCCCGGACAAAATTGAGAACTGGTAGTTTTCAGTTTTTCATATGGGCCTGGATGAGCTCATGCGAACTCTTACCCCTCCCTTTACTTGGGGAGAAAGATCAAATGGGTCTTTTCCAAGTTCCTGTTTGGCATTGACATCTTGTTCTGTCCGTCAGGTTTCAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

mRNA sequence

CGTGTGGCTCGGTGTAAGGTAGGCGGGGGAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGGAGCAGAACAGGCGATCAAGCCATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

Coding sequence (CDS)

ATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

Homology

[Close]

BLAST of CmoCh01G017920 vs. TrEMBL
Match: A0A0A0L0S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.6e-60
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 171

[Close]

BLAST of CmoCh01G017920 vs. TrEMBL
Match: F8WL76_CITUN (RRM-containing protein OS=Citrus unshiu GN=ORF09 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.6e-19
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRIL 168
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV RIL
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSRIL 161

[Close]

BLAST of CmoCh01G017920 vs. TrEMBL
Match: A0A067G1Q2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0261891mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 71/170 (41.76%), Postives = 93/170 (54.71%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV  +  P+
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPF 164

[Close]

BLAST of CmoCh01G017920 vs. TrEMBL
Match: D7STS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01390 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 69/170 (40.59%), Postives = 90/170 (52.94%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNST--SIDPWRIPPDYLLKELQTDSS 63
           D Y R  A +DR GS+ RS    Y    P  S  +    + D    P DY  K++     
Sbjct: 3   DPYWRRGAPSDR-GSIPRSSFPGYLPLDPSVSAAHHLWGTNDLHGAPSDYPPKDILPVR- 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG + + D+ GIR  P+PVIGG T+  +  G  +P  D     QR D+A G SPG+  +
Sbjct: 63  -PGAHDFDDIMGIRVPPKPVIGGFTATTNIKGYPNPVEDPNLIGQRRDVAHGISPGIPDI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
                E+ +S G  N E +P   QESNILFVDGLP DCTRREVG +  P+
Sbjct: 123 -----ERPSSFG--NVESLPPPVQESNILFVDGLPKDCTRREVGHLFRPF 162

[Close]

BLAST of CmoCh01G017920 vs. TrEMBL
Match: V4UPT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009319mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 70/170 (41.18%), Postives = 92/170 (54.12%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA   +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPAINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV  +  P+
Sbjct: 123 PDVINGVPSSL--RNNVGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPF 164

[Close]

BLAST of CmoCh01G017920 vs. NCBI nr
Match: gi|659103922|ref|XP_008452748.1| (PREDICTED: protein couch potato-like isoform X1 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 3.8e-61
Identity = 126/172 (73.26%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPP-DYLLKELQTD 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W  PP DY+ ++  T+
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD--TN 60

Query: 61  SSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMA 120
           S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF D+ A QR DIAVGSSPG+M 
Sbjct: 61  SLGPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMG 120

Query: 121 MADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Sbjct: 121 RADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPF 170

[Close]

BLAST of CmoCh01G017920 vs. NCBI nr
Match: gi|449447147|ref|XP_004141330.1| (PREDICTED: uncharacterized protein LOC101211987 isoform X1 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 171

[Close]

BLAST of CmoCh01G017920 vs. NCBI nr
Match: gi|659103925|ref|XP_008452749.1| (PREDICTED: protein couch potato-like isoform X2 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-59
Identity = 125/172 (72.67%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPP-DYLLKELQTD 60
           MGDDAYTRYAASADR GSVARSGLS YSEAPPL SYPNSTSID W  PP DY+ ++  T+
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD--TN 60

Query: 61  SSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMA 120
           S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF D+ A QR DIAVGSSPG+M 
Sbjct: 61  SLGPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMG 120

Query: 121 MADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Sbjct: 121 RADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPF 169

[Close]

BLAST of CmoCh01G017920 vs. NCBI nr
Match: gi|778696671|ref|XP_011654186.1| (PREDICTED: uncharacterized protein LOC101211987 isoform X2 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 8.8e-58
Identity = 123/173 (71.10%), Postives = 135/173 (78.03%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADR GSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 170

[Close]

BLAST of CmoCh01G017920 vs. NCBI nr
Match: gi|568840979|ref|XP_006474442.1| (PREDICTED: RNA-binding protein 1-like isoform X4 [Citrus sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRIL 168
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV RIL
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSRIL 161

The following BLAST results are available for this feature:

BLAST of CmoCh01G017920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S1_CUCSA	8.6e-60	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646270 PE=4 SV=1	[more]
F8WL76_CITUN	9.6e-19	43.71	RRM-containing protein OS=Citrus unshiu GN=ORF09 PE=4 SV=1	[more]
A0A067G1Q2_CITSI	1.2e-18	41.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0261891mg PE=4 ...	[more]
D7STS7_VITVI	4.7e-18	40.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01390 PE=4 SV=...	[more]
V4UPT7_9ROSI	8.1e-18	41.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009319mg PE=4 SV=1	[more]

BLAST of CmoCh01G017920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103922\|ref\|XP_008452748.1\|	3.8e-61	73.26	PREDICTED: protein couch potato-like isoform X1 [Cucumis melo]	[more]
gi\|449447147\|ref\|XP_004141330.1\|	1.2e-59	71.68	PREDICTED: uncharacterized protein LOC101211987 isoform X1 [Cucumis sativus]	[more]
gi\|659103925\|ref\|XP_008452749.1\|	2.7e-59	72.67	PREDICTED: protein couch potato-like isoform X2 [Cucumis melo]	[more]
gi\|778696671\|ref\|XP_011654186.1\|	8.8e-58	71.10	PREDICTED: uncharacterized protein LOC101211987 isoform X2 [Cucumis sativus]	[more]
gi\|568840979\|ref\|XP_006474442.1\|	1.4e-18	43.71	PREDICTED: RNA-binding protein 1-like isoform X4 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0035614	snRNA stem-loop binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017920.1	CmoCh01G017920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G017920	Cucsa.299590	Cucumber (Gy14) v1	cgycmoB0821
CmoCh01G017920	CmaCh09G003530	Cucurbita maxima (Rimu)	cmacmoB042
CmoCh01G017920	CmaCh01G017200	Cucurbita maxima (Rimu)	cmacmoB470
CmoCh01G017920	Cla020860	Watermelon (97103) v1	cmowmB429
CmoCh01G017920	Csa4G646270	Cucumber (Chinese Long) v2	cmocuB453
CmoCh01G017920	MELO3C016888	Melon (DHL92) v3.5.1	cmomeB435
CmoCh01G017920	ClCG05G018060	Watermelon (Charleston Gray)	cmowcgB408
CmoCh01G017920	CSPI04G25500	Wild cucumber (PI 183967)	cmocpiB457
CmoCh01G017920	Lsi04G014100	Bottle gourd (USVL1VR-Ls)	cmolsiB422
CmoCh01G017920	Cp4.1LG06g02550	Cucurbita pepo (Zucchini)	cmocpeB462
CmoCh01G017920	MELO3C016888.2	Melon (DHL92) v3.6.1	cmomedB499
CmoCh01G017920	Cla97C05G099370	Watermelon (97103) v2	cmowmbB456
CmoCh01G017920	Bhi09G002561	Wax gourd	cmowgoB0617
CmoCh01G017920	CsGy4G023820	Cucumber (Gy14) v2	cgybcmoB475
CmoCh01G017920	Carg10702	Silver-seed gourd	carcmoB1043
CmoCh01G017920	Carg02780	Silver-seed gourd	carcmoB0872

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G017920	CmoCh09G003530	Cucurbita moschata (Rifu)	cmocmoB014

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G017920	Cucumber (Gy14) v2	cgybcmoB926
CmoCh01G017920	Melon (DHL92) v3.6.1	cmomedB455
CmoCh01G017920	Silver-seed gourd	carcmoB0133
CmoCh01G017920	Cucumber (Chinese Long) v3	cmocucB0541
CmoCh01G017920	Wax gourd	cmowgoB0629
CmoCh01G017920	Cucurbita moschata (Rifu)	cmocmoB067
CmoCh01G017920	Cucurbita maxima (Rimu)	cmacmoB469
CmoCh01G017920	Cucurbita pepo (Zucchini)	cmocpeB445
CmoCh01G017920	Cucurbita pepo (Zucchini)	cmocpeB465
CmoCh01G017920	Bottle gourd (USVL1VR-Ls)	cmolsiB412
CmoCh01G017920	Cucumber (Gy14) v2	cgybcmoB103