CmoCh01G017920.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017920.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein isoform 4
Location	Cmo_Chr01 : 13208682 .. 13211220 (-)
Sequence length	792

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGTGGCTCGGTGTAAGGTAGGCGGGGGAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGGAGCAGAACAGGCGATCAAGCCATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGGTACTTTTCTCTTTTTGAGCCCTAGCTCAACGACCTCCTGTATTTTTTTGTTTCATTCCACTCGATATCGGCACGAACTTGCATTGTTTAGAATTGGAGTTACATTTGCGTTAGGTGTTCTCAGATTGTACTGTTTTGGCTGGAAGAATCTTGCGATTATGGAGTGAAAATTAACTCGATCAACTAAATCATCTTAAGAAAAATAATAAGAAATGAAAAGAAGCGTGTGGCCAGTTTCACTTGTACTAGGAGTGATGTCATTTTACGAAGCTGAACGATCAGTTTTCTTGGACTTGATGCATTAGGAGGATGTTTGGATGAGGAGCCGTGGAGTTAACCATGTTCGTTGCTGCTCGCACTGATCGATGATGACTATAGTATGTTAATTTGCTAGGTATTTTTGTATAGACGACGTAGCCGCAGCGTGTTGAGTCATTGATAGGAGGCAATTGCAAAGTCAGCTTCCTCACTGCTTCATTTGAGATTCACGAAAAATCTTCGCAAATTCTCTGTTTCATTAGAATCATTCTATATAAAATTTCTCTCCTCCTTGTTTTTTCATAATAATATGTAATCTGCAAACATAACTAATTTTTTGAGTCTAGCTTGAAAGTCTTTGGCGCTAAATGATTGGCACTTGATCAGTCAGTCTGCGTGCAAACATCATACTTGAAACTGACGTCCATTGTTGGCACTTGCAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAAGTAAGAATTTCATCTTAGTACAGAACATATTTACTTTATGAGAGTGCTTTACTTGACTTGTAGCTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTGTCTTTTTTTTTTTTTTTTTACTATTTCTTCTGTCTATCCAACTTTATCTACTTCCACCGTTGCTTAGGGTGCCGGCAGCATCCCATATGATTTGGGCTTCATTTGAAACTTAAAACAAATATTTTATGTCATTATAGTCAAAGAAAATAGAACATAAATTGCAATAGACAGAACTATGGTCATGTATCCTTTTTCTTTTTGTCATATCTTAACTTGAGTTGAAGATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAGTAAGTTATCAGTTTCTCTTTACTTTGAACTATGGAGGCATGTTTTCCCATGATAAGACCTTCAATTGTAATTAACAACTGCACGCCCTCTATGCTCAGATTTAATGGGGCCATTTTCTTCTGTTATCTGAGTTACATTGTCTACTCAGTGTATTCCTTTTGTTAAATTGAGTATTGAACTGCAGAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGGTATTGTGTAATATATTCCTCGTTGCAATGGAAAGTCTTTAGGGCTTCTTATGGTGTATTGCTTGGTACTTAAAGTTCTTGATCTAGTAATTAGCCAAGTATATATGGCACTACAATTACCGCCATTGACATTATTTGTGAACCAACACTCTAGAAGAACTAAGACAACTCTTAAGATGTTCCATATTATAAAGGAACAGCTATTACTTTAGATAATCTAATGTGTGATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCCGATTCCCTAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGTTTACCATCGAACCAGGATGACAGGCGATGAATACATAAGTTAAGCAACACTTTCCTGATTTTTAAGGGCTTTGTAGATCCTGTGGAATAGTAAAGCTTATCCCGGACAAAATTGAGAACTGGTAGTTTTCAGTTTTTCATATGGGCCTGGATGAGCTCATGCGAACTCTTACCCCTCCCTTTACTTGGGGAGAAAGATCAAATGGGTCTTTTCCAAGTTCCTGTTTGGCATTGACATCTTGTTCTGTCCGTCAGGTTTCAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

mRNA sequence

CGTGTGGCTCGGTGTAAGGTAGGCGGGGGAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGGAGCAGAACAGGCGATCAAGCCATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

Coding sequence (CDS)

ATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGATATCTTTTGCTTTGGATCATGAAAATGACATATAG

Homology

[Close]

BLAST of CmoCh01G017920.1 vs. TrEMBL
Match: A0A0A0L0S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.6e-60
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 171

[Close]

BLAST of CmoCh01G017920.1 vs. TrEMBL
Match: F8WL76_CITUN (RRM-containing protein OS=Citrus unshiu GN=ORF09 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.6e-19
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRIL 168
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV RIL
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSRIL 161

[Close]

BLAST of CmoCh01G017920.1 vs. TrEMBL
Match: A0A067G1Q2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0261891mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 71/170 (41.76%), Postives = 93/170 (54.71%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV  +  P+
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPF 164

[Close]

BLAST of CmoCh01G017920.1 vs. TrEMBL
Match: D7STS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01390 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 69/170 (40.59%), Postives = 90/170 (52.94%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNST--SIDPWRIPPDYLLKELQTDSS 63
           D Y R  A +DR GS+ RS    Y    P  S  +    + D    P DY  K++     
Sbjct: 3   DPYWRRGAPSDR-GSIPRSSFPGYLPLDPSVSAAHHLWGTNDLHGAPSDYPPKDILPVR- 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG + + D+ GIR  P+PVIGG T+  +  G  +P  D     QR D+A G SPG+  +
Sbjct: 63  -PGAHDFDDIMGIRVPPKPVIGGFTATTNIKGYPNPVEDPNLIGQRRDVAHGISPGIPDI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
                E+ +S G  N E +P   QESNILFVDGLP DCTRREVG +  P+
Sbjct: 123 -----ERPSSFG--NVESLPPPVQESNILFVDGLPKDCTRREVGHLFRPF 162

[Close]

BLAST of CmoCh01G017920.1 vs. TrEMBL
Match: V4UPT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009319mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 70/170 (41.18%), Postives = 92/170 (54.12%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA   +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPAINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV  +  P+
Sbjct: 123 PDVINGVPSSL--RNNVGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPF 164

[Close]

BLAST of CmoCh01G017920.1 vs. NCBI nr
Match: gi|659103922|ref|XP_008452748.1| (PREDICTED: protein couch potato-like isoform X1 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 3.8e-61
Identity = 126/172 (73.26%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPP-DYLLKELQTD 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W  PP DY+ ++  T+
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD--TN 60

Query: 61  SSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMA 120
           S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF D+ A QR DIAVGSSPG+M 
Sbjct: 61  SLGPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMG 120

Query: 121 MADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Sbjct: 121 RADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPF 170

[Close]

BLAST of CmoCh01G017920.1 vs. NCBI nr
Match: gi|449447147|ref|XP_004141330.1| (PREDICTED: uncharacterized protein LOC101211987 isoform X1 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 171

[Close]

BLAST of CmoCh01G017920.1 vs. NCBI nr
Match: gi|659103925|ref|XP_008452749.1| (PREDICTED: protein couch potato-like isoform X2 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-59
Identity = 125/172 (72.67%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPP-DYLLKELQTD 60
           MGDDAYTRYAASADR GSVARSGLS YSEAPPL SYPNSTSID W  PP DY+ ++  T+
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD--TN 60

Query: 61  SSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMA 120
           S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF D+ A QR DIAVGSSPG+M 
Sbjct: 61  SLGPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMG 120

Query: 121 MADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
            AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Sbjct: 121 RADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPF 169

[Close]

BLAST of CmoCh01G017920.1 vs. NCBI nr
Match: gi|778696671|ref|XP_011654186.1| (PREDICTED: uncharacterized protein LOC101211987 isoform X2 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 8.8e-58
Identity = 123/173 (71.10%), Postives = 135/173 (78.03%), Query Frame = 1


Query: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI--PPDYLLKELQT 60
           MGDDAYTRYAASADR GSVARSGLS YSEAPPL SYPNSTSID W    PPDY+ ++  T
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD--T 60

Query: 61  DSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLM 120
           +S GPG YGYTD+GG   YPEPVIGGVTSG SATG  SPF D+ A QR DIAVGSSPG+M
Sbjct: 61  NSLGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVM 120

Query: 121 AMADTGHEKANSLGL-RNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY 171
             AD GHE+ANSL L R  E  P   +ESN+LFVDGLPTDCTRREVG +  P+
Sbjct: 121 GRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPF 170

[Close]

BLAST of CmoCh01G017920.1 vs. NCBI nr
Match: gi|568840979|ref|XP_006474442.1| (PREDICTED: RNA-binding protein 1-like isoform X4 [Citrus sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1


Query: 4   DAYTRYAASADRAGSVARSGLSNY--SEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSS 63
           D + RY   ADRA SVAR   + Y  SEAP LTS    +S + +R   D+L +E+     
Sbjct: 3   DPFHRYDTPADRASSVARPSFAGYLTSEAPSLTSQQPLSS-NGFRGASDFLHREVTP--M 62

Query: 64  GPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQA-RQRHDIAVGSSPGLMAM 123
            PG  G  D  G+  +PEP + G+T+  S  G +SP  D     QR DIA G +P    +
Sbjct: 63  RPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINP---TI 122

Query: 124 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRIL 168
            D  +   +SL  RN    P+   ESN+LFVDGLPTDCTRREV RIL
Sbjct: 123 PDVINGVPSSL--RNNAGSPLKKGESNLLFVDGLPTDCTRREVSRIL 161

The following BLAST results are available for this feature:

BLAST of CmoCh01G017920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S1_CUCSA	8.6e-60	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646270 PE=4 SV=1	[more]
F8WL76_CITUN	9.6e-19	43.71	RRM-containing protein OS=Citrus unshiu GN=ORF09 PE=4 SV=1	[more]
A0A067G1Q2_CITSI	1.2e-18	41.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0261891mg PE=4 ...	[more]
D7STS7_VITVI	4.7e-18	40.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01390 PE=4 SV=...	[more]
V4UPT7_9ROSI	8.1e-18	41.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009319mg PE=4 SV=1	[more]

BLAST of CmoCh01G017920.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103922\|ref\|XP_008452748.1\|	3.8e-61	73.26	PREDICTED: protein couch potato-like isoform X1 [Cucumis melo]	[more]
gi\|449447147\|ref\|XP_004141330.1\|	1.2e-59	71.68	PREDICTED: uncharacterized protein LOC101211987 isoform X1 [Cucumis sativus]	[more]
gi\|659103925\|ref\|XP_008452749.1\|	2.7e-59	72.67	PREDICTED: protein couch potato-like isoform X2 [Cucumis melo]	[more]
gi\|778696671\|ref\|XP_011654186.1\|	8.8e-58	71.10	PREDICTED: uncharacterized protein LOC101211987 isoform X2 [Cucumis sativus]	[more]
gi\|568840979\|ref\|XP_006474442.1\|	1.4e-18	43.71	PREDICTED: RNA-binding protein 1-like isoform X4 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G017920	CmoCh01G017920	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017920.1	CmoCh01G017920.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017920.1.CDS.6	CmoCh01G017920.1.CDS.6	CDS
CmoCh01G017920.1.CDS.5	CmoCh01G017920.1.CDS.5	CDS
CmoCh01G017920.1.CDS.4	CmoCh01G017920.1.CDS.4	CDS
CmoCh01G017920.1.CDS.3	CmoCh01G017920.1.CDS.3	CDS
CmoCh01G017920.1.CDS.2	CmoCh01G017920.1.CDS.2	CDS
CmoCh01G017920.1.CDS.1	CmoCh01G017920.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017920.1.five_prime_UTR.1	CmoCh01G017920.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017920.1.exon.6	CmoCh01G017920.1.exon.6	exon
CmoCh01G017920.1.exon.5	CmoCh01G017920.1.exon.5	exon
CmoCh01G017920.1.exon.4	CmoCh01G017920.1.exon.4	exon
CmoCh01G017920.1.exon.3	CmoCh01G017920.1.exon.3	exon
CmoCh01G017920.1.exon.2	CmoCh01G017920.1.exon.2	exon
CmoCh01G017920.1.exon.1	CmoCh01G017920.1.exon.1	exon