CmoCh01G011230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G011230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 9270826 .. 9271536 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA

mRNA sequence

ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA

Coding sequence (CDS)

ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA

Homology

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BLAST of CmoCh01G011230 vs. TrEMBL
Match: A0A0A0K6W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-59
Identity = 149/243 (61.32%), Postives = 170/243 (69.96%), Query Frame = 1


Query: 1   MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSL 60
           MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL+LRFSPSF +L
Sbjct: 1   MEKFTTHCSSL-----------TSSSSFFTQSRFNLPIFSTLLASIFFLTLRFSPSFFTL 60

Query: 61  LILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEELSSD 120
           L+LLLIP+  F+ANKKS        NPL      HLFDE PQ T  + S  QIG+ +SSD
Sbjct: 61  LLLLLIPAILFIANKKS--------NPLY----HHLFDENPQTTPIQESTTQIGQHISSD 120

Query: 121 DD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYS 180
           D+    SSSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S
Sbjct: 121 DETSCSSSSNDGGLGSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNS 180

Query: 181 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVST 237
           + I         RNLETCLP+LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR  T
Sbjct: 181 NGI---------RNLETCLPNLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPT 211

[Close]

BLAST of CmoCh01G011230 vs. TrEMBL
Match: V7BKX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G056700g PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 116 ELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDS--SSEDDDSLIEIPLLPYS 175
           + S   DS S+ G   G  FE D     +E   +   SDD     +++DSLIEI L P S
Sbjct: 137 DYSLPSDSESSAGSILGESFEMDHKGNQNENISDSFASDDDYEGEDEEDSLIEINL-PRS 196

Query: 176 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEE---INEEDNLIEIDISRG 228
                D N +  + L++ LP+ LPDS+LKQ G +ELL E   +NE++NLIEIDIS G
Sbjct: 197 HF--PDLNEDPKQKLQSKLPEFLPDSILKQQGLMELLAEFNDMNEDENLIEIDISMG 250

[Close]

BLAST of CmoCh01G011230 vs. TrEMBL
Match: J3NDK4_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 130 ESGGDFESDLWMCL------DELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRE 189
           E  GD   DL   L      +E   +   SD+   +DD+SLIEI L+   D       ++
Sbjct: 96  ELAGDAPEDLTGSLSESPVSEECTEDGSLSDEEDGDDDESLIEISLV---DGHSVGQRKQ 155

Query: 190 LVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRG 228
                +  L + LPD +L++  F+++L EI+EEDNLIEIDI+RG
Sbjct: 156 CAWKEQDLLAEFLPDLLLEKRDFMDILSEISEEDNLIEIDIARG 196

[Close]

BLAST of CmoCh01G011230 vs. TrEMBL
Match: M5WLP0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022532mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 71/214 (33.18%), Postives = 94/214 (43.93%), Query Frame = 1


Query: 46  ICFLSLRFSPSFLSLLILLLIPSFFFL-ANKKSDSSQISDRNPL-----LISTAGHLFDE 105
           ICFLS  F P  L++ IL+L   F     NKK    +    NPL     L+     + ++
Sbjct: 2   ICFLSFEFFPLLLTISILILSTIFVLTNTNKKVILDEKPVGNPLCGQENLLHDGEGVREQ 61

Query: 106 KPQR-------------TVEELS-AAQIGEELSSDDDSSSNGGFESGGDFESD------- 165
             Q              TVE ++  AQ  E +++ DD   +   +S  D +S        
Sbjct: 62  LVQEVEDQNEIGHELLPTVETVTQTAQQSENVTNYDDQVEHPDVQSESDEQSVPSENFEL 121

Query: 166 LWMCLDELYRNLPFSDDSS--SEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLL 225
            WMC + L   +  SD  S   +DDDSLIEI L       +  SN              L
Sbjct: 122 SWMCSNNLGPKVEISDGCSVSDDDDDSLIEINLPASEPKEKLQSN--------------L 181

Query: 226 PDSVLKQNGFVELL---EEINEEDNLIEIDISRG 228
           PDS+ +Q G  E L    E+NEEDNLIEIDIS G
Sbjct: 182 PDSIFRQQGLREQLADINEVNEEDNLIEIDISMG 201

[Close]

BLAST of CmoCh01G011230 vs. TrEMBL
Match: A0A0D2Q3D5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099600 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 1


Query: 34  LNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTA 93
           ++++V S +L S  FL L F     +  IL++  SF    +KKS+   + + +   +   
Sbjct: 65  VSILVPSLVLTS--FLGLGFYVILFTTTILIISTSFLVKFSKKSNGVLVENPSSTKLQVE 124

Query: 94  GHLFDEKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDE-LYRNLPF 153
             +            +A +    + ++     +    S  ++    WM     L RN   
Sbjct: 125 DEVLTPLLMNKTVSDAAIEADNGIVNEFQVDDSLDLTSEREYVEMKWMISGNVLERNREI 184

Query: 154 SDD-SSSEDDDS--LIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVEL 213
           SD+ S+SE+DD   LIEI + P +D   T  N E   NL+  LP LLP+ V  Q   VEL
Sbjct: 185 SDEYSTSEEDDEEGLIEIAI-PSNDT--TGLNEEPKPNLQPNLPTLLPEPVSHQQDLVEL 244

Query: 214 LEEI---NEEDNLIEIDISRG 228
           LEEI   NEE+NLIEIDIS G
Sbjct: 245 LEEINEANEEENLIEIDISMG 260

[Close]

BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|700188779|gb|KGN44012.1| (hypothetical protein Csa_7G101780 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 4.8e-59
Identity = 149/243 (61.32%), Postives = 170/243 (69.96%), Query Frame = 1


Query: 1   MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSL 60
           MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL+LRFSPSF +L
Sbjct: 1   MEKFTTHCSSL-----------TSSSSFFTQSRFNLPIFSTLLASIFFLTLRFSPSFFTL 60

Query: 61  LILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEELSSD 120
           L+LLLIP+  F+ANKKS        NPL      HLFDE PQ T  + S  QIG+ +SSD
Sbjct: 61  LLLLLIPAILFIANKKS--------NPLY----HHLFDENPQTTPIQESTTQIGQHISSD 120

Query: 121 DD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYS 180
           D+    SSSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S
Sbjct: 121 DETSCSSSSNDGGLGSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNS 180

Query: 181 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVST 237
           + I         RNLETCLP+LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR  T
Sbjct: 181 NGI---------RNLETCLPNLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPT 211

[Close]

BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|1009176662|ref|XP_015869551.1| (PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba])

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 148 RNLPFSDDSSSE----DDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLKQ 207
           +NL  SD S SE    DDDSLIEI L P S++     N  L  NL++ LP+LLP+S+ ++
Sbjct: 156 QNLAVSDSSVSEEDDDDDDSLIEISL-PGSESSGIKENANL--NLQSKLPELLPESIFRE 215

Query: 208 NGFVELLE---EINEEDNLIEIDISRG 228
           +GF EL+E   E+NEE+NLIEIDIS G
Sbjct: 216 HGFRELIEEMNEMNEEENLIEIDISMG 239

[Close]

BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|1009177747|ref|XP_015870143.1| (PREDICTED: uncharacterized protein LOC107407378 [Ziziphus jujuba])

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 148 RNLPFSDDSSSE-----DDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLK 207
           +NL  SD S SE     DDDSLIEI L P S++     N  L  NL++ LP+LLP+S+ +
Sbjct: 155 QNLAVSDSSVSEEDDDDDDDSLIEISL-PGSESSGIKENANL--NLQSKLPELLPESIFR 214

Query: 208 QNGFVELLE---EINEEDNLIEIDISRG 228
           ++GF EL+E   E+NEE+NLIEIDIS G
Sbjct: 215 EHGFRELIEEMNEMNEEENLIEIDISMG 239

[Close]

BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|672133609|ref|XP_008790433.1| (PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 152 FSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLET-CLPDLLPDSVLKQNGFVELL 211
           FS+ S S DDD+LIEI +   +  +  +SN +L   L    L D LP++V +Q+G +ELL
Sbjct: 103 FSEGSIS-DDDNLIEIEIPHGNYVVTEESNSQLKPELRGGFLLDFLPETVCRQHGLMELL 162

Query: 212 EEINEEDNLIEIDISRGFNRVSTV 235
            EINEEDNLIEIDI+RG  + S V
Sbjct: 163 SEINEEDNLIEIDIARGSIKCSRV 185

[Close]

BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|224129186|ref|XP_002320522.1| (hypothetical protein POPTR_0014s16570g [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 8.5e-08
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 117 LSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAI 176
           ++S+ D           + E   W+  D+++++   SD S S D+DSLIEI L P    I
Sbjct: 132 ITSESDCLGRSSTSEDSEVE---WLFQDKMFQSRECSDGSIS-DEDSLIEISL-PGGHYI 191

Query: 177 RTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINE---EDNLIEIDISRG 228
                 E++ NL+  LPD  P S  KQ+G +ELL E+NE   E+NLIEIDIS G
Sbjct: 192 CDHEEDEVIYNLQNKLPDFAPGSFFKQHGLMELLAELNEMNEEENLIEIDISMG 240

The following BLAST results are available for this feature:

BLAST of CmoCh01G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6W9_CUCSA	3.3e-59	61.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1	[more]
V7BKX5_PHAVU	5.0e-07	42.74	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G056700g PE=4 SV=1	[more]
J3NDK4_ORYBR	1.9e-06	37.50	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
M5WLP0_PRUPE	1.9e-06	33.18	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022532mg PE=4 S...	[more]
A0A0D2Q3D5_GOSRA	2.5e-06	32.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099600 PE=4 SV=1	[more]

BLAST of CmoCh01G011230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188779\|gb\|KGN44012.1\|	4.8e-59	61.32	hypothetical protein Csa_7G101780 [Cucumis sativus]	[more]
gi\|1009176662\|ref\|XP_015869551.1\|	4.5e-09	52.87	PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba]	[more]
gi\|1009177747\|ref\|XP_015870143.1\|	5.9e-09	52.27	PREDICTED: uncharacterized protein LOC107407378 [Ziziphus jujuba]	[more]
gi\|672133609\|ref\|XP_008790433.1\|	5.0e-08	50.00	PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera]	[more]
gi\|224129186\|ref\|XP_002320522.1\|	8.5e-08	40.35	hypothetical protein POPTR_0014s16570g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G011230.1	CmoCh01G011230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35708	FAMILY NOT NAMED	coord: 118..227 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G011230	CmaCh01G010770	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G011230	Cla003306	Watermelon (97103) v1	cmowmB404
CmoCh01G011230	ClCG09G021280	Watermelon (Charleston Gray)	cmowcgB378
CmoCh01G011230	Lsi02G018350	Bottle gourd (USVL1VR-Ls)	cmolsiB395
CmoCh01G011230	Cp4.1LG02g00520	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G011230	MELO3C024932.2	Melon (DHL92) v3.6.1	cmomedB443
CmoCh01G011230	CsaV3_7G015100	Cucumber (Chinese Long) v3	cmocucB0575
CmoCh01G011230	Bhi09G001472	Wax gourd	cmowgoB0616
CmoCh01G011230	CsGy7G008010	Cucumber (Gy14) v2	cgybcmoB913

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G011230	Watermelon (97103) v2	cmowmbB497
CmoCh01G011230	Cucurbita moschata (Rifu)	cmocmoB018
CmoCh01G011230	Cucurbita maxima (Rimu)	cmacmoB048
CmoCh01G011230	Cucumber (Chinese Long) v2	cmocuB488
CmoCh01G011230	Melon (DHL92) v3.5.1	cmomeB392
CmoCh01G011230	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G011230	Silver-seed gourd	carcmoB1194
CmoCh01G011230	Silver-seed gourd	carcmoB1215