Lsi02G018350 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G018350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 24144405 .. 24145055 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGTTCACTGACCACTGCTCTTCACTCTGTTCATCATCATCATTATCATCCTCTTTCACACAATCACGCCTCAATGTCGCCATTGTTTCAACTCTTCTAGCTTCAATTTGCTTCCTCAGTCTCCGATTCTCACCTTCTTTCCTCACGCTCCTCCTCCTTTTAATCCCTTCCACTCTCTTCCTCGCAAAGAAAAAATCAGATTCGCTTCAAATCTCCGCCGCCGACCACCTGTTCGACCAAAAGCCTCAAACAAAAGCGGAAGAAGAATCCGCCGCGCAAATCGGAGAAGAGCATTCTTCCGATGATGAAACTAGTAGTAGTAGCAGCCAGAGTAACAACAATGGCGGATTAAGTAGTGGAGATTTCAACTCCGATCTCTGGATGTATTTAGACGAACTGTCTCGGAATCTTCCGTCTTCTGAGGATTCGAGTTCCGAAGACGACGATAGCTTGATCGAAATTCCTCTTCTTCCAAATTTGAATGCGATTCGAAATCTTGAAACGTGTTTGCCTGATTTGTTACCGGATTCTGTTTTGAGACAACACGGATTTGTGGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAGATCGATATTTCCAAAGGTTTCAATCGATTTTCCGCTGTTTGCAATTGA

mRNA sequence

ATGGAAAAGTTCACTGACCACTGCTCTTCACTCTGTTCATCATCATCATTATCATCCTCTTTCACACAATCACGCCTCAATGTCGCCATTGTTTCAACTCTTCTAGCTTCAATTTGCTTCCTCAGTCTCCGATTCTCACCTTCTTTCCTCACGCTCCTCCTCCTTTTAATCCCTTCCACTCTCTTCCTCGCAAAGAAAAAATCAGATTCGCTTCAAATCTCCGCCGCCGACCACCTGTTCGACCAAAAGCCTCAAACAAAAGCGGAAGAAGAATCCGCCGCGCAAATCGGAGAAGAGCATTCTTCCGATGATGAAACTAGTAGTAGTAGCAGCCAGAGTAACAACAATGGCGGATTAAGTAGTGGAGATTTCAACTCCGATCTCTGGATGTATTTAGACGAACTGTCTCGGAATCTTCCGTCTTCTGAGGATTCGAGTTCCGAAGACGACGATAGCTTGATCGAAATTCCTCTTCTTCCAAATTTGAATGCGATTCGAAATCTTGAAACGTGTTTGCCTGATTTGTTACCGGATTCTGTTTTGAGACAACACGGATTTGTGGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAGATCGATATTTCCAAAGGTTTCAATCGATTTTCCGCTGTTTGCAATTGA

Coding sequence (CDS)

ATGGAAAAGTTCACTGACCACTGCTCTTCACTCTGTTCATCATCATCATTATCATCCTCTTTCACACAATCACGCCTCAATGTCGCCATTGTTTCAACTCTTCTAGCTTCAATTTGCTTCCTCAGTCTCCGATTCTCACCTTCTTTCCTCACGCTCCTCCTCCTTTTAATCCCTTCCACTCTCTTCCTCGCAAAGAAAAAATCAGATTCGCTTCAAATCTCCGCCGCCGACCACCTGTTCGACCAAAAGCCTCAAACAAAAGCGGAAGAAGAATCCGCCGCGCAAATCGGAGAAGAGCATTCTTCCGATGATGAAACTAGTAGTAGTAGCAGCCAGAGTAACAACAATGGCGGATTAAGTAGTGGAGATTTCAACTCCGATCTCTGGATGTATTTAGACGAACTGTCTCGGAATCTTCCGTCTTCTGAGGATTCGAGTTCCGAAGACGACGATAGCTTGATCGAAATTCCTCTTCTTCCAAATTTGAATGCGATTCGAAATCTTGAAACGTGTTTGCCTGATTTGTTACCGGATTCTGTTTTGAGACAACACGGATTTGTGGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAGATCGATATTTCCAAAGGTTTCAATCGATTTTCCGCTGTTTGCAATTGA

Protein sequence

MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

Homology

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BLAST of Lsi02G018350 vs. TrEMBL
Match: A0A0A0K6W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.5e-69
Identity = 163/220 (74.09%), Postives = 177/220 (80.45%), Query Frame = 1


Query: 1   MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLL-IPS 60
           MEKFT HCSSL SSSS    FTQSR N+ I STLLASI FL+LRFSPSF TLLLLL IP+
Sbjct: 1   MEKFTTHCSSLTSSSSF---FTQSRFNLPIFSTLLASIFFLTLRFSPSFFTLLLLLLIPA 60

Query: 61  TLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGL 120
            LF+A KKS+ L      HLFD+ PQT   +ES  QIG+  SSDDETS SSS  +N+GGL
Sbjct: 61  ILFIANKKSNPLY----HHLFDENPQTTPIQESTTQIGQHISSDDETSCSSS--SNDGGL 120

Query: 121 SSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLL 180
            SGDF SDLWM+LDEL+RNLP SED SS   +DDDSLIEIPLLPN N IRNLETCLP+LL
Sbjct: 121 GSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLL 180

Query: 181 PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN 217
           PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRF  VCN
Sbjct: 181 PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPTVCN 211

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BLAST of Lsi02G018350 vs. TrEMBL
Match: M0T9V0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 172 LPDLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFS 213
           L + LPDSVLRQHG +ELL EINEEDNLIEIDI++G  ++S
Sbjct: 12  LTNRLPDSVLRQHGLMELLSEINEEDNLIEIDITRGSIKYS 52

[Close]

BLAST of Lsi02G018350 vs. TrEMBL
Match: A0A0B2PNZ4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039404 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 68  SDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSD 127
           S+S   S  D  F+   Q    +E   Q      SD E+S  S    +      G+ N D
Sbjct: 114 SESCNFSIMDETFELNVQEHRLQEDM-QSDYSLPSDSESSDDSIMGESFEMDHIGNQNED 173

Query: 128 LWMYLDELSRNLPSSEDSSSEDDDSLIEIPL----LPNL--NAIRNLETCLPDLLPDSVL 187
           +    + L+ +    ED   E++D+LIEI L     P+L  +  + L+T LPD LPDS+ 
Sbjct: 174 I--ISESLNSDDDYEEDEDEEEEDTLIEINLPSSHFPDLIEDPKQKLQTKLPDFLPDSIF 233

Query: 188 RQHGFVELLEEI---NEEDNLIEIDISKG 208
           +Q G +ELLEEI   NE++NLIEIDIS G
Sbjct: 234 KQQGLMELLEEINDMNEDENLIEIDISMG 259

[Close]

BLAST of Lsi02G018350 vs. TrEMBL
Match: C6TE55_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 68  SDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSD 127
           S+S   S  D  F+   Q    +E   Q      SD E+S  S    +      G+ N D
Sbjct: 114 SESCNFSIIDETFELNVQEHRLQEDM-QSDYSLPSDSESSDDSIMGESFEMDHIGNQNED 173

Query: 128 LWMYLDELSRNLPSSEDSSSEDDDSLIEIPL----LPNL--NAIRNLETCLPDLLPDSVL 187
           +    + L+ +    ED   E++D+LIEI L     P+L  +  + L+T LPD LPDS+ 
Sbjct: 174 I--ISESLNSDDDYEEDEDEEEEDTLIEINLPSSHFPDLIEDPKQKLQTKLPDFLPDSIF 233

Query: 188 RQHGFVELLEEI---NEEDNLIEIDISKG 208
           +Q G +ELLEEI   NE++NLIEIDIS G
Sbjct: 234 KQQGLMELLEEINDMNEDENLIEIDISMG 259

[Close]

BLAST of Lsi02G018350 vs. TrEMBL
Match: I1KYJ0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G329000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 68  SDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSD 127
           S+S   S  D  F+   Q    +E   Q      SD E+S  S    +      G+ N D
Sbjct: 114 SESCNFSIMDETFELNVQEHRLQEDM-QSDYSLPSDSESSDDSIMGESFEMDHIGNQNED 173

Query: 128 LWMYLDELSRNLPSSEDSSSEDDDSLIEIPL----LPNL--NAIRNLETCLPDLLPDSVL 187
           +    + L+ +    ED   E++D+LIEI L     P+L  +  + L+T LPD LPDS+ 
Sbjct: 174 I--ISESLNSDDDYEEDEDEEEEDTLIEINLPSSHFPDLIEDPKQKLQTKLPDFLPDSIF 233

Query: 188 RQHGFVELLEEI---NEEDNLIEIDISKG 208
           +Q G +ELLEEI   NE++NLIEIDIS G
Sbjct: 234 KQQGLMELLEEINDMNEDENLIEIDISMG 259

[Close]

BLAST of Lsi02G018350 vs. NCBI nr
Match: gi|700188779|gb|KGN44012.1| (hypothetical protein Csa_7G101780 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 3.6e-69
Identity = 163/220 (74.09%), Postives = 177/220 (80.45%), Query Frame = 1


Query: 1   MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLL-IPS 60
           MEKFT HCSSL SSSS    FTQSR N+ I STLLASI FL+LRFSPSF TLLLLL IP+
Sbjct: 1   MEKFTTHCSSLTSSSSF---FTQSRFNLPIFSTLLASIFFLTLRFSPSFFTLLLLLLIPA 60

Query: 61  TLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGL 120
            LF+A KKS+ L      HLFD+ PQT   +ES  QIG+  SSDDETS SSS  +N+GGL
Sbjct: 61  ILFIANKKSNPLY----HHLFDENPQTTPIQESTTQIGQHISSDDETSCSSS--SNDGGL 120

Query: 121 SSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLL 180
            SGDF SDLWM+LDEL+RNLP SED SS   +DDDSLIEIPLLPN N IRNLETCLP+LL
Sbjct: 121 GSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLL 180

Query: 181 PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN 217
           PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRF  VCN
Sbjct: 181 PDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPTVCN 211

[Close]

BLAST of Lsi02G018350 vs. NCBI nr
Match: gi|1009176662|ref|XP_015869551.1| (PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 9.2e-09
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 137 RNLPSSEDSSSE----DDDSLIEIPLLPNL------NAIRNLETCLPDLLPDSVLRQHGF 196
           +NL  S+ S SE    DDDSLIEI L  +       NA  NL++ LP+LLP+S+ R+HGF
Sbjct: 156 QNLAVSDSSVSEEDDDDDDSLIEISLPGSESSGIKENANLNLQSKLPELLPESIFREHGF 215

Query: 197 VELLE---EINEEDNLIEIDISKG 208
            EL+E   E+NEE+NLIEIDIS G
Sbjct: 216 RELIEEMNEMNEEENLIEIDISMG 239

[Close]

BLAST of Lsi02G018350 vs. NCBI nr
Match: gi|672133609|ref|XP_008790433.1| (PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1


Query: 132 LDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAIRNLET-----------CLPDLLPDSV 191
           L + S  L    + S  DDD+LIEI + P+ N +   E+            L D LP++V
Sbjct: 93  LPKNSHQLKEFSEGSISDDDNLIEIEI-PHGNYVVTEESNSQLKPELRGGFLLDFLPETV 152

Query: 192 LRQHGFVELLEEINEEDNLIEIDISKGFNRFSAV 215
            RQHG +ELL EINEEDNLIEIDI++G  + S V
Sbjct: 153 CRQHGLMELLSEINEEDNLIEIDIARGSIKCSRV 185

[Close]

BLAST of Lsi02G018350 vs. NCBI nr
Match: gi|672170747|ref|XP_008805438.1| (PREDICTED: uncharacterized protein LOC103718409 [Phoenix dactylifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 142 SEDSSSEDDDSLIEIPL-------LPNLNAI--RNLETCLPDLLPDSVLRQHGFVELLEE 201
           SE  SSED+D LIEI +           NA+  R+    LP+ LP++V RQHG +ELL E
Sbjct: 213 SESLSSEDED-LIEIAVPDGHYIERKESNALWPRSAADFLPNFLPEAVFRQHGLMELLSE 272

Query: 202 INEEDNLIEIDISKGFNRFSAV 215
           INE+DNLIEIDI  G  + S++
Sbjct: 273 INEDDNLIEIDIVMGSIKCSSL 293

[Close]

BLAST of Lsi02G018350 vs. NCBI nr
Match: gi|695036998|ref|XP_009405975.1| (PREDICTED: uncharacterized protein LOC103988996 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 78/210 (37.14%), Postives = 108/210 (51.43%), Query Frame = 1


Query: 28  VAIVSTLLASICFLSL---RFSPSFLTLLLLLIPSTLFLAKK-------KSDSLQI-SAA 87
           VAI   LL    F S      + +FL  L +L+ ST             KSDS+Q  S A
Sbjct: 21  VAIALCLLLLFSFWSCCRNHLASAFLATLFVLVLSTFLPFSLPRIRQLIKSDSIQKPSPA 80

Query: 88  DHLF-DQKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDEL 147
           D +F D+K           ++    +S D + +  S S +    S+ D + D  + L++ 
Sbjct: 81  DQVFADKKVDAAVAGSGEGELTHAWTSSD-SGTPDSLSRSASQFSNFDDDDDESL-LEDA 140

Query: 148 SRNLPSSEDSSSEDDDSLIEIPLLPNLNAI-----RNLETCLPDL--------LPDSVLR 207
             +  SSEDS S DD++LIEI L P+ + +     + L   LPD         LPDSVLR
Sbjct: 141 CHSTESSEDSIS-DDENLIEISL-PDGHFVAPEKPKALMKPLPDTRRGFLTNRLPDSVLR 200

Query: 208 QHGFVELLEEINEEDNLIEIDISKGFNRFS 213
           QHG +ELL EINEEDNLIEIDI++G  ++S
Sbjct: 201 QHGLMELLSEINEEDNLIEIDITRGSIKYS 226

The following BLAST results are available for this feature:

BLAST of Lsi02G018350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G018350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6W9_CUCSA	2.5e-69	74.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1	[more]
M0T9V0_MUSAM	2.3e-06	70.73	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0B2PNZ4_GLYSO	8.7e-06	37.58	Uncharacterized protein OS=Glycine soja GN=glysoja_039404 PE=4 SV=1	[more]
C6TE55_SOYBN	8.7e-06	37.58	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I1KYJ0_SOYBN	8.7e-06	37.58	Uncharacterized protein OS=Glycine max GN=GLYMA_08G329000 PE=4 SV=1	[more]

BLAST of Lsi02G018350 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G018350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188779\|gb\|KGN44012.1\|	3.6e-69	74.09	hypothetical protein Csa_7G101780 [Cucumis sativus]	[more]
gi\|1009176662\|ref\|XP_015869551.1\|	9.2e-09	53.57	PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba]	[more]
gi\|672133609\|ref\|XP_008790433.1\|	2.3e-07	44.68	PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera]	[more]
gi\|672170747\|ref\|XP_008805438.1\|	2.5e-06	48.78	PREDICTED: uncharacterized protein LOC103718409 [Phoenix dactylifera]	[more]
gi\|695036998\|ref\|XP_009405975.1\|	5.6e-06	37.14	PREDICTED: uncharacterized protein LOC103988996 [Musa acuminata subsp. malaccens...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G018350.1	Lsi02G018350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G018350	CmaCh01G010770	Cucurbita maxima (Rimu)	cmalsiB409
Lsi02G018350	CmoCh01G011230	Cucurbita moschata (Rifu)	cmolsiB395
Lsi02G018350	Cla003306	Watermelon (97103) v1	lsiwmB177
Lsi02G018350	MELO3C024932	Melon (DHL92) v3.5.1	lsimeB193
Lsi02G018350	ClCG09G021280	Watermelon (Charleston Gray)	lsiwcgB161
Lsi02G018350	MELO3C024932.2	Melon (DHL92) v3.6.1	lsimedB196
Lsi02G018350	Bhi09G001472	Wax gourd	lsiwgoB280
Lsi02G018350	Cp4.1LG02g00520	Cucurbita pepo (Zucchini)	cpelsiB445
Lsi02G018350	CsGy7G008010	Cucumber (Gy14) v2	cgyblsiB473
Lsi02G018350	CsaV3_7G015100	Cucumber (Chinese Long) v3	cuclsiB539

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G018350	Cucurbita maxima (Rimu)	cmalsiB018
Lsi02G018350	Cucurbita moschata (Rifu)	cmolsiB006
Lsi02G018350	Cucurbita pepo (Zucchini)	cpelsiB633
Lsi02G018350	Cucumber (Chinese Long) v2	culsiB511
Lsi02G018350	Silver-seed gourd	carlsiB802
Lsi02G018350	Silver-seed gourd	carlsiB823
Lsi02G018350	Watermelon (97103) v2	lsiwmbB214