CmoCh01G011230 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G011230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 9270826 .. 9271536 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA

mRNA sequence

ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA

Coding sequence (CDS)

ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGTCGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGAACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCCGCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTATCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAATTAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATCGAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA
Homology
[Close]
BLAST of CmoCh01G011230 vs. TrEMBL
Match: A0A0A0K6W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-59
Identity = 149/243 (61.32%), Postives = 170/243 (69.96%), Query Frame = 1 

Query: 1   MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSL 60
           MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL+LRFSPSF +L
Sbjct: 1   MEKFTTHCSSL-----------TSSSSFFTQSRFNLPIFSTLLASIFFLTLRFSPSFFTL 60

Query: 61  LILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEELSSD 120
           L+LLLIP+  F+ANKKS        NPL      HLFDE PQ T  + S  QIG+ +SSD
Sbjct: 61  LLLLLIPAILFIANKKS--------NPLY----HHLFDENPQTTPIQESTTQIGQHISSD 120

Query: 121 DD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYS 180
           D+    SSSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S
Sbjct: 121 DETSCSSSSNDGGLGSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNS 180

Query: 181 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVST 237
           + I         RNLETCLP+LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR  T
Sbjct: 181 NGI---------RNLETCLPNLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPT 211

[Close]
BLAST of CmoCh01G011230 vs. TrEMBL
Match: V7BKX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G056700g PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 116 ELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDS--SSEDDDSLIEIPLLPYS 175
           + S   DS S+ G   G  FE D     +E   +   SDD     +++DSLIEI L P S
Sbjct: 137 DYSLPSDSESSAGSILGESFEMDHKGNQNENISDSFASDDDYEGEDEEDSLIEINL-PRS 196

Query: 176 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEE---INEEDNLIEIDISRG 228
                D N +  + L++ LP+ LPDS+LKQ G +ELL E   +NE++NLIEIDIS G
Sbjct: 197 HF--PDLNEDPKQKLQSKLPEFLPDSILKQQGLMELLAEFNDMNEDENLIEIDISMG 250

[Close]
BLAST of CmoCh01G011230 vs. TrEMBL
Match: J3NDK4_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 130 ESGGDFESDLWMCL------DELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRE 189
           E  GD   DL   L      +E   +   SD+   +DD+SLIEI L+   D       ++
Sbjct: 96  ELAGDAPEDLTGSLSESPVSEECTEDGSLSDEEDGDDDESLIEISLV---DGHSVGQRKQ 155

Query: 190 LVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRG 228
                +  L + LPD +L++  F+++L EI+EEDNLIEIDI+RG
Sbjct: 156 CAWKEQDLLAEFLPDLLLEKRDFMDILSEISEEDNLIEIDIARG 196

[Close]
BLAST of CmoCh01G011230 vs. TrEMBL
Match: M5WLP0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022532mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 71/214 (33.18%), Postives = 94/214 (43.93%), Query Frame = 1 

Query: 46  ICFLSLRFSPSFLSLLILLLIPSFFFL-ANKKSDSSQISDRNPL-----LISTAGHLFDE 105
           ICFLS  F P  L++ IL+L   F     NKK    +    NPL     L+     + ++
Sbjct: 2   ICFLSFEFFPLLLTISILILSTIFVLTNTNKKVILDEKPVGNPLCGQENLLHDGEGVREQ 61

Query: 106 KPQR-------------TVEELS-AAQIGEELSSDDDSSSNGGFESGGDFESD------- 165
             Q              TVE ++  AQ  E +++ DD   +   +S  D +S        
Sbjct: 62  LVQEVEDQNEIGHELLPTVETVTQTAQQSENVTNYDDQVEHPDVQSESDEQSVPSENFEL 121

Query: 166 LWMCLDELYRNLPFSDDSS--SEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLL 225
            WMC + L   +  SD  S   +DDDSLIEI L       +  SN              L
Sbjct: 122 SWMCSNNLGPKVEISDGCSVSDDDDDSLIEINLPASEPKEKLQSN--------------L 181

Query: 226 PDSVLKQNGFVELL---EEINEEDNLIEIDISRG 228
           PDS+ +Q G  E L    E+NEEDNLIEIDIS G
Sbjct: 182 PDSIFRQQGLREQLADINEVNEEDNLIEIDISMG 201

[Close]
BLAST of CmoCh01G011230 vs. TrEMBL
Match: A0A0D2Q3D5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099600 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 1 

Query: 34  LNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTA 93
           ++++V S +L S  FL L F     +  IL++  SF    +KKS+   + + +   +   
Sbjct: 65  VSILVPSLVLTS--FLGLGFYVILFTTTILIISTSFLVKFSKKSNGVLVENPSSTKLQVE 124

Query: 94  GHLFDEKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDE-LYRNLPF 153
             +            +A +    + ++     +    S  ++    WM     L RN   
Sbjct: 125 DEVLTPLLMNKTVSDAAIEADNGIVNEFQVDDSLDLTSEREYVEMKWMISGNVLERNREI 184

Query: 154 SDD-SSSEDDDS--LIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVEL 213
           SD+ S+SE+DD   LIEI + P +D   T  N E   NL+  LP LLP+ V  Q   VEL
Sbjct: 185 SDEYSTSEEDDEEGLIEIAI-PSNDT--TGLNEEPKPNLQPNLPTLLPEPVSHQQDLVEL 244

Query: 214 LEEI---NEEDNLIEIDISRG 228
           LEEI   NEE+NLIEIDIS G
Sbjct: 245 LEEINEANEEENLIEIDISMG 260

[Close]
BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|700188779|gb|KGN44012.1| (hypothetical protein Csa_7G101780 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 4.8e-59
Identity = 149/243 (61.32%), Postives = 170/243 (69.96%), Query Frame = 1 

Query: 1   MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSL 60
           MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL+LRFSPSF +L
Sbjct: 1   MEKFTTHCSSL-----------TSSSSFFTQSRFNLPIFSTLLASIFFLTLRFSPSFFTL 60

Query: 61  LILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEELSSD 120
           L+LLLIP+  F+ANKKS        NPL      HLFDE PQ T  + S  QIG+ +SSD
Sbjct: 61  LLLLLIPAILFIANKKS--------NPLY----HHLFDENPQTTPIQESTTQIGQHISSD 120

Query: 121 DD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYS 180
           D+    SSSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S
Sbjct: 121 DETSCSSSSNDGGLGSGDFKSDLWMHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNS 180

Query: 181 DAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVST 237
           + I         RNLETCLP+LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR  T
Sbjct: 181 NGI---------RNLETCLPNLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFPT 211

[Close]
BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|1009176662|ref|XP_015869551.1| (PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba])

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 148 RNLPFSDDSSSE----DDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLKQ 207
           +NL  SD S SE    DDDSLIEI L P S++     N  L  NL++ LP+LLP+S+ ++
Sbjct: 156 QNLAVSDSSVSEEDDDDDDSLIEISL-PGSESSGIKENANL--NLQSKLPELLPESIFRE 215

Query: 208 NGFVELLE---EINEEDNLIEIDISRG 228
           +GF EL+E   E+NEE+NLIEIDIS G
Sbjct: 216 HGFRELIEEMNEMNEEENLIEIDISMG 239

[Close]
BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|1009177747|ref|XP_015870143.1| (PREDICTED: uncharacterized protein LOC107407378 [Ziziphus jujuba])

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 148 RNLPFSDDSSSE-----DDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLK 207
           +NL  SD S SE     DDDSLIEI L P S++     N  L  NL++ LP+LLP+S+ +
Sbjct: 155 QNLAVSDSSVSEEDDDDDDDSLIEISL-PGSESSGIKENANL--NLQSKLPELLPESIFR 214

Query: 208 QNGFVELLE---EINEEDNLIEIDISRG 228
           ++GF EL+E   E+NEE+NLIEIDIS G
Sbjct: 215 EHGFRELIEEMNEMNEEENLIEIDISMG 239

[Close]
BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|672133609|ref|XP_008790433.1| (PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 152 FSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLET-CLPDLLPDSVLKQNGFVELL 211
           FS+ S S DDD+LIEI +   +  +  +SN +L   L    L D LP++V +Q+G +ELL
Sbjct: 103 FSEGSIS-DDDNLIEIEIPHGNYVVTEESNSQLKPELRGGFLLDFLPETVCRQHGLMELL 162

Query: 212 EEINEEDNLIEIDISRGFNRVSTV 235
            EINEEDNLIEIDI+RG  + S V
Sbjct: 163 SEINEEDNLIEIDIARGSIKCSRV 185

[Close]
BLAST of CmoCh01G011230 vs. NCBI nr
Match: gi|224129186|ref|XP_002320522.1| (hypothetical protein POPTR_0014s16570g [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 8.5e-08
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1 

Query: 117 LSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAI 176
           ++S+ D           + E   W+  D+++++   SD S S D+DSLIEI L P    I
Sbjct: 132 ITSESDCLGRSSTSEDSEVE---WLFQDKMFQSRECSDGSIS-DEDSLIEISL-PGGHYI 191

Query: 177 RTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINE---EDNLIEIDISRG 228
                 E++ NL+  LPD  P S  KQ+G +ELL E+NE   E+NLIEIDIS G
Sbjct: 192 CDHEEDEVIYNLQNKLPDFAPGSFFKQHGLMELLAELNEMNEEENLIEIDISMG 240

The following BLAST results are available for this feature:
BLAST of CmoCh01G011230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G011230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6W9_CUCSA3.3e-5961.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G101780 PE=4 SV=1[more]
V7BKX5_PHAVU5.0e-0742.74Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G056700g PE=4 SV=1[more]
J3NDK4_ORYBR1.9e-0637.50Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
M5WLP0_PRUPE1.9e-0633.18Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022532mg PE=4 S... [more]
A0A0D2Q3D5_GOSRA2.5e-0632.84Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099600 PE=4 SV=1[more]
BLAST of CmoCh01G011230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G011230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188779|gb|KGN44012.1|4.8e-5961.32hypothetical protein Csa_7G101780 [Cucumis sativus][more]
gi|1009176662|ref|XP_015869551.1|4.5e-0952.87PREDICTED: uncharacterized protein LOC107406855 [Ziziphus jujuba][more]
gi|1009177747|ref|XP_015870143.1|5.9e-0952.27PREDICTED: uncharacterized protein LOC107407378 [Ziziphus jujuba][more]
gi|672133609|ref|XP_008790433.1|5.0e-0850.00PREDICTED: uncharacterized protein LOC103707640 [Phoenix dactylifera][more]
gi|224129186|ref|XP_002320522.1|8.5e-0840.35hypothetical protein POPTR_0014s16570g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G011230.1CmoCh01G011230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35708FAMILY NOT NAMEDcoord: 118..227
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G011230CmaCh01G010770Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G011230Cla003306Watermelon (97103) v1cmowmB404
CmoCh01G011230ClCG09G021280Watermelon (Charleston Gray)cmowcgB378
CmoCh01G011230Lsi02G018350Bottle gourd (USVL1VR-Ls)cmolsiB395
CmoCh01G011230Cp4.1LG02g00520Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G011230MELO3C024932.2Melon (DHL92) v3.6.1cmomedB443
CmoCh01G011230CsaV3_7G015100Cucumber (Chinese Long) v3cmocucB0575
CmoCh01G011230Bhi09G001472Wax gourdcmowgoB0616
CmoCh01G011230CsGy7G008010Cucumber (Gy14) v2cgybcmoB913
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G011230Cucurbita maxima (Rimu)cmacmoB048
CmoCh01G011230Cucumber (Chinese Long) v2cmocuB488
CmoCh01G011230Melon (DHL92) v3.5.1cmomeB392
CmoCh01G011230Cucurbita pepo (Zucchini)cmocpeB464
CmoCh01G011230Silver-seed gourdcarcmoB1194
CmoCh01G011230Silver-seed gourdcarcmoB1215
CmoCh01G011230Watermelon (97103) v2cmowmbB497
CmoCh01G011230Cucurbita moschata (Rifu)cmocmoB018