CmoCh01G010780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G010780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP-dependent Clp protease ATP-binding subunit
Location	Cmo_Chr01 : 8980270 .. 8981541 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTTGCATTATATTCATTTCTCTCACTTTTGAATAGCCATGGATCTAGACCATTTTGCACAACCATGGAGAATCTCTCATGAACTTGAAGAAATGTTCTCCATAATTCTTCACGAGTTCTCTTCTGAATTTTCTTTTCCAATGCCTGTTTTTTGTTTTAGAATTTACTGTTCTTCTTGTTCATGTTTATTGGTGTCTGATGTTTTTGCTGAAGCAATCCAAATAGAGGCATATGCCTCAGCAGATTAGATATTTTTGGTTACACCCTTTGACCATCTGCACCTCCTTAGCTGAGAGAGGTGTATTTGGATTAAAGGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAAGTAACCTTTTAGAACACGGTGACAATGATTTGGTCTAGCGGTTAAAGCAACAATGGGAGATTTGGAGGGGAAGAAACTGCAGAAATTTGTAAGAAAGGGCTAGAGAGTTGAGATCAGGTTGCTTAGCTGTGGGACGCACCGATACTCGACTTTTCGAGCTCATCTTTGTGTACCCTTTCTGTTTCCTTTTCAGTTTGAATTGTTTGTGA

mRNA sequence

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAATTTGAATTGTTTGTGA

Coding sequence (CDS)

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAATTTGAATTGTTTGTGA

Homology

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BLAST of CmoCh01G010780 vs. Swiss-Prot
Match: CLPD_ARATH (Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = 1


Query: 29  TVSSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLR 88
           + SSS+  ++ +++S+LS      F SS L  S S   +  F +    +    +RKR+  
Sbjct: 19  SASSSSSHVTSIAASSLSS-----FASSYLGISLSNRTIHRFSTTPTNLRRFPQRKRKKF 78

Query: 89  IPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSG 148
            P ISA+FERFTERAI+A+IFSQ+EAK+L KD+V+TQHLLLGLIAE+   Q   GFL SG
Sbjct: 79  TP-ISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQ---GFLGSG 138

Query: 149 LTLSVAREAVRDIWHTNDAIGDASVHSAAITPH-----VPFAISTKRVFDSAVEYSKQMG 208
           +T+  AREAV  IW  ++A  D+    A+ T +     +PF+ISTKRVF++AVEYS+ M 
Sbjct: 139 ITIDKAREAVWSIW--DEANSDSKQEEASSTSYSKSTDMPFSISTKRVFEAAVEYSRTMD 198

Query: 209 HHFIGPEHLSIALLAADDDGSIQLILRR 232
             +I PEH+++ L    DDGS   +L+R
Sbjct: 199 CQYIAPEHIAVGLFTV-DDGSAGRVLKR 214

[Close]

BLAST of CmoCh01G010780 vs. Swiss-Prot
Match: CLPD1_ORYSJ (Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-29
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1


Query: 85  RRLRIPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGF 144
           RR R  V+ A+FERFTERA+KAV+ SQREAK L +  V  +HLLLGLIAE+   +SAGGF
Sbjct: 63  RRARRAVVRAVFERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAED---RSAGGF 122

Query: 145 LDSGLTLSVAREAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGH 204
           L SG+ +  ARE  R I   +   G  S   + +   +PF+ S KRVF+ AVE+S+ MG 
Sbjct: 123 LSSGINIERAREECRGIGARDLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGC 182

Query: 205 HFIGPEHLSIALLAADDDGSIQLI 229
            FI PEHL++AL   DD  +  L+
Sbjct: 183 SFISPEHLALALFTLDDPTTNSLL 203

[Close]

BLAST of CmoCh01G010780 vs. Swiss-Prot
Match: CLPD2_ORYSJ (Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD2 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 75/193 (38.86%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 31  SSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIP 90
           SSS  S S+L++     RR     +     + + A     R+   L++    R+R     
Sbjct: 8   SSSVPSASILATGAGLRRRFSPAGAGGGGRAVAVAAGRPIRASAALLAAPAPRRRGG--V 67

Query: 91  VISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLT 150
           V+ A+FERFTERA+KAV+FSQREA+ +  + V   HLLLGL+AE+   +S  GFL SG+ 
Sbjct: 68  VVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAED---RSPLGFLASGVR 127

Query: 151 LSVAREAVRDIWHTNDAIGDASVHSA--AITPHVPFAISTKRVFDSAVEYSKQMGHHFIG 210
           +  AREA R       A+G   +  A   +   VPF+ ++KRVF++AVE+S+ MG +FI 
Sbjct: 128 VERAREACR------AAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNMGCNFIS 187

Query: 211 PEHLSIALLAADD 222
           PEH+++ L   +D
Sbjct: 188 PEHIALGLFNLND 189

[Close]

BLAST of CmoCh01G010780 vs. Swiss-Prot
Match: CLPC2_ORYSJ (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1


Query: 38  SVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFE 97
           S+L+ S     ++  F     V SFS   VT+FRS   + S + RR RR R  V  ++FE
Sbjct: 34  SMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNFRST--VASYRSRRGRRARF-VTRSMFE 93

Query: 98  RFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREA 157
           RFTE+AIK ++ +Q EA+ L  + V T+ +LLGLI E     +A      G+ L  AR  
Sbjct: 94  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINLKDARVE 153

Query: 158 VRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALL 217
           V  I      IG     +  +   +PF    KRV + ++E ++Q+GH++IG EHL + LL
Sbjct: 154 VEKI------IGRG---NGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLL 200

[Close]

BLAST of CmoCh01G010780 vs. Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-14
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 71  RSRNGLISGKIRRKRRLRIP-------VISAIFERFTERAIKAVIFSQREAKALSKDLVF 130
           RSR     GK+R+   + +P       V+ A+FERFTE+AIK ++ +Q EA+ L  + V 
Sbjct: 13  RSRQSF-GGKVRQA--MNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVG 72

Query: 131 TQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASVHSAAITPHVP 190
           T+ +LLGLI E     +A      G+ L  AR  V  I      IG     S  +   +P
Sbjct: 73  TEQILLGLIGEGT-GIAAKVLKSMGINLKDARVEVEKI------IGRG---SGFVAVEIP 132

Query: 191 FAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILRRYCKAKFVAVKLI 247
           F    KRV + ++E ++Q+GH++IG EHL + LL   +  + +++         +  ++I
Sbjct: 133 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 182

[Close]

BLAST of CmoCh01G010780 vs. TrEMBL
Match: M5WQK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000853mg PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAI+AVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIQAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEEE ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEEQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780 vs. TrEMBL
Match: A0A067ERC0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780 vs. TrEMBL
Match: A0A067EUZ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780 vs. TrEMBL
Match: A0A067F2L3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780 vs. TrEMBL
Match: A0A067ERI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780 vs. TAIR10
Match: AT5G51070.1 (AT5G51070.1 Clp ATPase)

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-36
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = 1


Query: 29  TVSSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLR 88
           + SSS+  ++ +++S+LS      F SS L  S S   +  F +    +    +RKR+  
Sbjct: 19  SASSSSSHVTSIAASSLSS-----FASSYLGISLSNRTIHRFSTTPTNLRRFPQRKRKKF 78

Query: 89  IPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSG 148
            P ISA+FERFTERAI+A+IFSQ+EAK+L KD+V+TQHLLLGLIAE+   Q   GFL SG
Sbjct: 79  TP-ISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQ---GFLGSG 138

Query: 149 LTLSVAREAVRDIWHTNDAIGDASVHSAAITPH-----VPFAISTKRVFDSAVEYSKQMG 208
           +T+  AREAV  IW  ++A  D+    A+ T +     +PF+ISTKRVF++AVEYS+ M 
Sbjct: 139 ITIDKAREAVWSIW--DEANSDSKQEEASSTSYSKSTDMPFSISTKRVFEAAVEYSRTMD 198

Query: 209 HHFIGPEHLSIALLAADDDGSIQLILRR 232
             +I PEH+++ L    DDGS   +L+R
Sbjct: 199 CQYIAPEHIAVGLFTV-DDGSAGRVLKR 214

[Close]

BLAST of CmoCh01G010780 vs. TAIR10
Match: AT5G50920.1 (AT5G50920.1 CLPC homologue 1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 63/212 (29.72%), Postives = 102/212 (48.11%), Query Frame = 1


Query: 41  SSSNLSGRRIHGFPS---SNLVSSFSPA---FVTSFRSRNGLISGKIRRKRRLRIPVISA 100
           S   +SG R+ GF     +N + +   +   F +  R    +  GK  R        + A
Sbjct: 40  SQLQVSGLRMQGFMGLRGNNALDTLGKSRQDFHSKVRQAMNVPKGKASRF------TVKA 99

Query: 101 IFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVA 160
           +FERFTE+AIK ++ +Q EA+ L  + V T+ +LLGLI E     +A      G+ L  A
Sbjct: 100 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINLKDA 159

Query: 161 REAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSI 220
           R  V  I      IG     S  +   +PF    KRV + ++E ++Q+GH++IG EHL +
Sbjct: 160 RVEVEKI------IGRG---SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 219

Query: 221 ALLAADDDGSIQLILRRYCKAKFVAVKLIRSV 247
            LL   +  + +++         +  ++IR V
Sbjct: 220 GLLREGEGVAARVLENLGADPSNIRTQVIRMV 235

[Close]

BLAST of CmoCh01G010780 vs. TAIR10
Match: AT3G48870.1 (AT3G48870.1 Clp ATPase)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 65/215 (30.23%), Postives = 106/215 (49.30%), Query Frame = 1


Query: 33  STCSLSVLSSSNLSGRRIHGFPSS-NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPV 92
           S+    +L+  + SG R    PS+ + +   SP F+  ++    L     R K    +P 
Sbjct: 60  SSLQAPLLTIQSFSGLRA---PSALDYLGRPSPGFLVKYK----LAKSSGREKASRCVP- 119

Query: 93  ISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTL 152
             A+FERFTE+AIK ++ SQ EA+ L  + V T+ +LLGLI E     +A      G+ L
Sbjct: 120 -KAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINL 179

Query: 153 SVAREAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEH 212
             +R  V  I      IG     S  +   +PF    KRV + ++E ++Q+GH++IG EH
Sbjct: 180 KDSRVEVEKI------IGRG---SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEH 239

Query: 213 LSIALLAADDDGSIQLILRRYCKAKFVAVKLIRSV 247
           L + LL   +  + +++         +  ++IR V
Sbjct: 240 LLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV 255

[Close]

BLAST of CmoCh01G010780 vs. NCBI nr
Match: gi|659093951|ref|XP_008447802.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.3e-102
Identity = 202/236 (85.59%), Postives = 214/236 (90.68%), Query Frame = 1


Query: 1   MPATPSSNLFHQTSVFDCHKQTH------LISPATVSSSTCSLSVLSSSNLSGRRIHGFP 60
           MPATPSS+L +QTSVFDCHKQTH      LISPA+VSSSTCSLSV S S+LSGRRI+GFP
Sbjct: 1   MPATPSSSLINQTSVFDCHKQTHVHGCSRLISPASVSSSTCSLSVFSGSHLSGRRINGFP 60

Query: 61  SSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREA 120
           SSNLVSSFS +F+TS   RNG ISG+IR+KRRLRIPVISAIFERFTERAIKAVIFSQREA
Sbjct: 61  SSNLVSSFSSSFITS---RNGFISGRIRQKRRLRIPVISAIFERFTERAIKAVIFSQREA 120

Query: 121 KALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASVH 180
           KALSKDLVFTQHLLLGLIAEEEHNQS GGFLDSGLTL VAREAVR IWH NDA GD S+H
Sbjct: 121 KALSKDLVFTQHLLLGLIAEEEHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAEGDTSLH 180

Query: 181 SAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 231
            AA+T HVPF+ISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR
Sbjct: 181 GAAVTAHVPFSISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 233

[Close]

BLAST of CmoCh01G010780 vs. NCBI nr
Match: gi|778725486|ref|XP_011658949.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 8.9e-96
Identity = 192/237 (81.01%), Postives = 208/237 (87.76%), Query Frame = 1


Query: 1   MPATPSSNLFHQTSVFDCHKQTH------LISPATVSSSTCSLSVLSSSNLSGRRIHGFP 60
           MPA  SS+L +QTSVFDCHKQTH      LISPA++SSSTCSL VLS+S+LSGRRI+GFP
Sbjct: 1   MPAASSSSLINQTSVFDCHKQTHVHGCSRLISPASISSSTCSLGVLSNSHLSGRRINGFP 60

Query: 61  SSNLVSSFSPAFVTSFRSRNGLISGKIRRK-RRLRIPVISAIFERFTERAIKAVIFSQRE 120
           SSNLVS FS +F+T   SRN  ISG+I++K RRLRIP+ISAIFERFTERAIKAVIFSQRE
Sbjct: 61  SSNLVSLFSSSFIT---SRNCFISGRIQQKRRRLRIPIISAIFERFTERAIKAVIFSQRE 120

Query: 121 AKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASV 180
           AKALSKDLVFTQHLLLGLIAEEEHNQS GGFLDSGLTL VARE VR IWH NDA  D S+
Sbjct: 121 AKALSKDLVFTQHLLLGLIAEEEHNQSPGGFLDSGLTLHVARETVRGIWHNNDAEADTSL 180

Query: 181 HSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 231
           H AA+T HVPF+ISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLA DDDGSIQLILR
Sbjct: 181 HGAAVTAHVPFSISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLATDDDGSIQLILR 234

[Close]

BLAST of CmoCh01G010780 vs. NCBI nr
Match: gi|645267916|ref|XP_008239294.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Prunus mume])

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAIKAVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIKAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEE+ ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEDQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780 vs. NCBI nr
Match: gi|595852922|ref|XP_007210399.1| (hypothetical protein PRUPE_ppa000853mg [Prunus persica])

HSP 1 Score: 164.1 bits (414), Expect = 3.2e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAI+AVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIQAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEEE ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEEQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780 vs. NCBI nr
Match: gi|568863205|ref|XP_006485047.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Citrus sinensis])

HSP 1 Score: 162.9 bits (411), Expect = 7.2e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

The following BLAST results are available for this feature:

BLAST of CmoCh01G010780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPD_ARATH	1.5e-34	46.15	Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1	[more]
CLPD1_ORYSJ	7.2e-29	50.00	Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD1 ...	[more]
CLPD2_ORYSJ	1.3e-22	38.86	Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD2 ...	[more]
CLPC2_ORYSJ	1.2e-15	36.67	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 ...	[more]
CLPA_BRANA	2.3e-14	32.24	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]

BLAST of CmoCh01G010780 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WQK4_PRUPE	2.3e-37	49.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000853mg PE=4 SV=1	[more]
A0A067ERC0_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1	[more]
A0A067EUZ5_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1	[more]
A0A067F2L3_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1	[more]
A0A067ERI3_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1	[more]

BLAST of CmoCh01G010780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51070.1	8.5e-36	46.15	Clp ATPase	[more]
AT5G50920.1	1.1e-14	29.72	CLPC homologue 1	[more]
AT3G48870.1	2.4e-14	30.23	Clp ATPase	[more]

BLAST of CmoCh01G010780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093951\|ref\|XP_008447802.1\|	1.3e-102	85.59	PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo]	[more]
gi\|778725486\|ref\|XP_011658949.1\|	8.9e-96	81.01	PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus]	[more]
gi\|645267916\|ref\|XP_008239294.1\|	2.5e-37	49.46	PREDICTED: chaperone protein ClpD, chloroplastic [Prunus mume]	[more]
gi\|595852922\|ref\|XP_007210399.1\|	3.2e-37	49.46	hypothetical protein PRUPE_ppa000853mg [Prunus persica]	[more]
gi\|568863205\|ref\|XP_006485047.1\|	7.2e-37	51.35	PREDICTED: chaperone protein ClpD, chloroplastic [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004176	Clp_N

Vocabulary: **Biological Process**
Term	Definition
GO:0019538	protein metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010780.1	CmoCh01G010780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, N-terminal	GENE3D	G3DSA:1.10.1780.10		coord: 96..230 score: 8.7
IPR004176	Clp, N-terminal	PFAM	PF02861	Clp_N	coord: 111..136 score: 0.29coord: 195..231 score: 2.
IPR004176	Clp, N-terminal	unknown	SSF81923	Double Clp-N motif	coord: 97..217 score: 7.16
None	No IPR available	PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	coord: 85..231 score: 8.8
None	No IPR available	PANTHER	PTHR11638:SF118	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	coord: 85..231 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G010780	Cucumber (Gy14) v2	cgybcmoB915
CmoCh01G010780	Melon (DHL92) v3.6.1	cmomedB451
CmoCh01G010780	Silver-seed gourd	carcmoB0093
CmoCh01G010780	Silver-seed gourd	carcmoB0107
CmoCh01G010780	Silver-seed gourd	carcmoB1384
CmoCh01G010780	Cucumber (Chinese Long) v3	cmocucB0577
CmoCh01G010780	Watermelon (97103) v2	cmowmbB497
CmoCh01G010780	Wax gourd	cmowgoB0616
CmoCh01G010780	Cucurbita moschata (Rifu)	cmocmoB018
CmoCh01G010780	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh01G010780	Cucumber (Gy14) v1	cgycmoB0916
CmoCh01G010780	Cucurbita maxima (Rimu)	cmacmoB048
CmoCh01G010780	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G010780	Wild cucumber (PI 183967)	cmocpiB485
CmoCh01G010780	Cucumber (Chinese Long) v2	cmocuB479
CmoCh01G010780	Melon (DHL92) v3.5.1	cmomeB394
CmoCh01G010780	Watermelon (Charleston Gray)	cmowcgB378
CmoCh01G010780	Watermelon (97103) v1	cmowmB404
CmoCh01G010780	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G010780	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G010780	Bottle gourd (USVL1VR-Ls)	cmolsiB395