CmoCh01G010780.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G010780.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP-dependent Clp protease ATP-binding subunit
Location	Cmo_Chr01 : 8980270 .. 8981541 (-)
Sequence length	765

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTTGCATTATATTCATTTCTCTCACTTTTGAATAGCCATGGATCTAGACCATTTTGCACAACCATGGAGAATCTCTCATGAACTTGAAGAAATGTTCTCCATAATTCTTCACGAGTTCTCTTCTGAATTTTCTTTTCCAATGCCTGTTTTTTGTTTTAGAATTTACTGTTCTTCTTGTTCATGTTTATTGGTGTCTGATGTTTTTGCTGAAGCAATCCAAATAGAGGCATATGCCTCAGCAGATTAGATATTTTTGGTTACACCCTTTGACCATCTGCACCTCCTTAGCTGAGAGAGGTGTATTTGGATTAAAGGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAAGTAACCTTTTAGAACACGGTGACAATGATTTGGTCTAGCGGTTAAAGCAACAATGGGAGATTTGGAGGGGAAGAAACTGCAGAAATTTGTAAGAAAGGGCTAGAGAGTTGAGATCAGGTTGCTTAGCTGTGGGACGCACCGATACTCGACTTTTCGAGCTCATCTTTGTGTACCCTTTCTGTTTCCTTTTCAGTTTGAATTGTTTGTGA

mRNA sequence

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAATTTGAATTGTTTGTGA

Coding sequence (CDS)

ATGCCAGCGACCCCATCTTCCAATTTGTTCCATCAAACTTCGGTGTTCGATTGCCATAAACAGACCCATTTGATTTCTCCGGCTACGGTTTCTTCTTCCACTTGTTCATTGAGTGTTCTATCGAGTTCCAATTTATCCGGACGGCGAATCCATGGATTCCCATCTTCCAATCTTGTGTCCTCGTTTTCCCCTGCGTTTGTCACTTCATTTCGTTCGCGAAATGGTTTAATCAGCGGCAAAATCCGGCGGAAGAGGCGGTTGAGGATTCCGGTCATTTCTGCCATTTTTGAGCGGTTCACCGAAAGAGCGATTAAGGCTGTGATCTTTTCGCAGAGAGAGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTTTGGGTTTGATTGCTGAGGAAGAACATAATCAATCTGCTGGTGGTTTTTTAGATTCGGGTCTTACACTCTCTGTGGCTCGTGAGGCCGTTCGTGATATTTGGCATACTAACGATGCAATAGGTGATGCCAGTGTTCATAGTGCGGCTATTACGCCTCATGTCCCCTTTGCTATCAGCACCAAGAGGGTGTTTGATTCCGCTGTTGAGTATTCCAAGCAAATGGGCCATCATTTCATTGGACCTGAACACCTTTCCATTGCTTTACTTGCTGCTGACGATGATGGAAGCATACAGTTGATTTTGAGGAGGTATTGTAAGGCCAAATTTGTTGCTGTGAAGTTAATAAGAAGCGTTTGCATCTGCAATTTGAATTGTTTGTGA

Homology

[Close]

BLAST of CmoCh01G010780.1 vs. Swiss-Prot
Match: CLPD_ARATH (Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = 1


Query: 29  TVSSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLR 88
           + SSS+  ++ +++S+LS      F SS L  S S   +  F +    +    +RKR+  
Sbjct: 19  SASSSSSHVTSIAASSLSS-----FASSYLGISLSNRTIHRFSTTPTNLRRFPQRKRKKF 78

Query: 89  IPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSG 148
            P ISA+FERFTERAI+A+IFSQ+EAK+L KD+V+TQHLLLGLIAE+   Q   GFL SG
Sbjct: 79  TP-ISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQ---GFLGSG 138

Query: 149 LTLSVAREAVRDIWHTNDAIGDASVHSAAITPH-----VPFAISTKRVFDSAVEYSKQMG 208
           +T+  AREAV  IW  ++A  D+    A+ T +     +PF+ISTKRVF++AVEYS+ M 
Sbjct: 139 ITIDKAREAVWSIW--DEANSDSKQEEASSTSYSKSTDMPFSISTKRVFEAAVEYSRTMD 198

Query: 209 HHFIGPEHLSIALLAADDDGSIQLILRR 232
             +I PEH+++ L    DDGS   +L+R
Sbjct: 199 CQYIAPEHIAVGLFTV-DDGSAGRVLKR 214

[Close]

BLAST of CmoCh01G010780.1 vs. Swiss-Prot
Match: CLPD1_ORYSJ (Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-29
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1


Query: 85  RRLRIPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGF 144
           RR R  V+ A+FERFTERA+KAV+ SQREAK L +  V  +HLLLGLIAE+   +SAGGF
Sbjct: 63  RRARRAVVRAVFERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAED---RSAGGF 122

Query: 145 LDSGLTLSVAREAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGH 204
           L SG+ +  ARE  R I   +   G  S   + +   +PF+ S KRVF+ AVE+S+ MG 
Sbjct: 123 LSSGINIERAREECRGIGARDLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGC 182

Query: 205 HFIGPEHLSIALLAADDDGSIQLI 229
            FI PEHL++AL   DD  +  L+
Sbjct: 183 SFISPEHLALALFTLDDPTTNSLL 203

[Close]

BLAST of CmoCh01G010780.1 vs. Swiss-Prot
Match: CLPD2_ORYSJ (Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD2 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 75/193 (38.86%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 31  SSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIP 90
           SSS  S S+L++     RR     +     + + A     R+   L++    R+R     
Sbjct: 8   SSSVPSASILATGAGLRRRFSPAGAGGGGRAVAVAAGRPIRASAALLAAPAPRRRGG--V 67

Query: 91  VISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLT 150
           V+ A+FERFTERA+KAV+FSQREA+ +  + V   HLLLGL+AE+   +S  GFL SG+ 
Sbjct: 68  VVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAED---RSPLGFLASGVR 127

Query: 151 LSVAREAVRDIWHTNDAIGDASVHSA--AITPHVPFAISTKRVFDSAVEYSKQMGHHFIG 210
           +  AREA R       A+G   +  A   +   VPF+ ++KRVF++AVE+S+ MG +FI 
Sbjct: 128 VERAREACR------AAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNMGCNFIS 187

Query: 211 PEHLSIALLAADD 222
           PEH+++ L   +D
Sbjct: 188 PEHIALGLFNLND 189

[Close]

BLAST of CmoCh01G010780.1 vs. Swiss-Prot
Match: CLPC2_ORYSJ (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1


Query: 38  SVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFE 97
           S+L+ S     ++  F     V SFS   VT+FRS   + S + RR RR R  V  ++FE
Sbjct: 34  SMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNFRST--VASYRSRRGRRARF-VTRSMFE 93

Query: 98  RFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREA 157
           RFTE+AIK ++ +Q EA+ L  + V T+ +LLGLI E     +A      G+ L  AR  
Sbjct: 94  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINLKDARVE 153

Query: 158 VRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALL 217
           V  I      IG     +  +   +PF    KRV + ++E ++Q+GH++IG EHL + LL
Sbjct: 154 VEKI------IGRG---NGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLL 200

[Close]

BLAST of CmoCh01G010780.1 vs. Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-14
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 71  RSRNGLISGKIRRKRRLRIP-------VISAIFERFTERAIKAVIFSQREAKALSKDLVF 130
           RSR     GK+R+   + +P       V+ A+FERFTE+AIK ++ +Q EA+ L  + V 
Sbjct: 13  RSRQSF-GGKVRQA--MNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVG 72

Query: 131 TQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASVHSAAITPHVP 190
           T+ +LLGLI E     +A      G+ L  AR  V  I      IG     S  +   +P
Sbjct: 73  TEQILLGLIGEGT-GIAAKVLKSMGINLKDARVEVEKI------IGRG---SGFVAVEIP 132

Query: 191 FAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILRRYCKAKFVAVKLI 247
           F    KRV + ++E ++Q+GH++IG EHL + LL   +  + +++         +  ++I
Sbjct: 133 FTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVI 182

[Close]

BLAST of CmoCh01G010780.1 vs. TrEMBL
Match: M5WQK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000853mg PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAI+AVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIQAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEEE ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEEQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780.1 vs. TrEMBL
Match: A0A067ERC0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780.1 vs. TrEMBL
Match: A0A067EUZ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780.1 vs. TrEMBL
Match: A0A067F2L3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780.1 vs. TrEMBL
Match: A0A067ERI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

[Close]

BLAST of CmoCh01G010780.1 vs. TAIR10
Match: AT5G51070.1 (AT5G51070.1 Clp ATPase)

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-36
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = 1


Query: 29  TVSSSTCSLSVLSSSNLSGRRIHGFPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLR 88
           + SSS+  ++ +++S+LS      F SS L  S S   +  F +    +    +RKR+  
Sbjct: 19  SASSSSSHVTSIAASSLSS-----FASSYLGISLSNRTIHRFSTTPTNLRRFPQRKRKKF 78

Query: 89  IPVISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSG 148
            P ISA+FERFTERAI+A+IFSQ+EAK+L KD+V+TQHLLLGLIAE+   Q   GFL SG
Sbjct: 79  TP-ISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQ---GFLGSG 138

Query: 149 LTLSVAREAVRDIWHTNDAIGDASVHSAAITPH-----VPFAISTKRVFDSAVEYSKQMG 208
           +T+  AREAV  IW  ++A  D+    A+ T +     +PF+ISTKRVF++AVEYS+ M 
Sbjct: 139 ITIDKAREAVWSIW--DEANSDSKQEEASSTSYSKSTDMPFSISTKRVFEAAVEYSRTMD 198

Query: 209 HHFIGPEHLSIALLAADDDGSIQLILRR 232
             +I PEH+++ L    DDGS   +L+R
Sbjct: 199 CQYIAPEHIAVGLFTV-DDGSAGRVLKR 214

[Close]

BLAST of CmoCh01G010780.1 vs. TAIR10
Match: AT5G50920.1 (AT5G50920.1 CLPC homologue 1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 63/212 (29.72%), Postives = 102/212 (48.11%), Query Frame = 1


Query: 41  SSSNLSGRRIHGFPS---SNLVSSFSPA---FVTSFRSRNGLISGKIRRKRRLRIPVISA 100
           S   +SG R+ GF     +N + +   +   F +  R    +  GK  R        + A
Sbjct: 40  SQLQVSGLRMQGFMGLRGNNALDTLGKSRQDFHSKVRQAMNVPKGKASRF------TVKA 99

Query: 101 IFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVA 160
           +FERFTE+AIK ++ +Q EA+ L  + V T+ +LLGLI E     +A      G+ L  A
Sbjct: 100 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINLKDA 159

Query: 161 REAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSI 220
           R  V  I      IG     S  +   +PF    KRV + ++E ++Q+GH++IG EHL +
Sbjct: 160 RVEVEKI------IGRG---SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 219

Query: 221 ALLAADDDGSIQLILRRYCKAKFVAVKLIRSV 247
            LL   +  + +++         +  ++IR V
Sbjct: 220 GLLREGEGVAARVLENLGADPSNIRTQVIRMV 235

[Close]

BLAST of CmoCh01G010780.1 vs. TAIR10
Match: AT3G48870.1 (AT3G48870.1 Clp ATPase)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 65/215 (30.23%), Postives = 106/215 (49.30%), Query Frame = 1


Query: 33  STCSLSVLSSSNLSGRRIHGFPSS-NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPV 92
           S+    +L+  + SG R    PS+ + +   SP F+  ++    L     R K    +P 
Sbjct: 60  SSLQAPLLTIQSFSGLRA---PSALDYLGRPSPGFLVKYK----LAKSSGREKASRCVP- 119

Query: 93  ISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTL 152
             A+FERFTE+AIK ++ SQ EA+ L  + V T+ +LLGLI E     +A      G+ L
Sbjct: 120 -KAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT-GIAAKVLKSMGINL 179

Query: 153 SVAREAVRDIWHTNDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEH 212
             +R  V  I      IG     S  +   +PF    KRV + ++E ++Q+GH++IG EH
Sbjct: 180 KDSRVEVEKI------IGRG---SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEH 239

Query: 213 LSIALLAADDDGSIQLILRRYCKAKFVAVKLIRSV 247
           L + LL   +  + +++         +  ++IR V
Sbjct: 240 LLLGLLREGEGVAARVLENLGADPSNIRTQVIRMV 255

[Close]

BLAST of CmoCh01G010780.1 vs. NCBI nr
Match: gi|659093951|ref|XP_008447802.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.3e-102
Identity = 202/236 (85.59%), Postives = 214/236 (90.68%), Query Frame = 1


Query: 1   MPATPSSNLFHQTSVFDCHKQTH------LISPATVSSSTCSLSVLSSSNLSGRRIHGFP 60
           MPATPSS+L +QTSVFDCHKQTH      LISPA+VSSSTCSLSV S S+LSGRRI+GFP
Sbjct: 1   MPATPSSSLINQTSVFDCHKQTHVHGCSRLISPASVSSSTCSLSVFSGSHLSGRRINGFP 60

Query: 61  SSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREA 120
           SSNLVSSFS +F+TS   RNG ISG+IR+KRRLRIPVISAIFERFTERAIKAVIFSQREA
Sbjct: 61  SSNLVSSFSSSFITS---RNGFISGRIRQKRRLRIPVISAIFERFTERAIKAVIFSQREA 120

Query: 121 KALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASVH 180
           KALSKDLVFTQHLLLGLIAEEEHNQS GGFLDSGLTL VAREAVR IWH NDA GD S+H
Sbjct: 121 KALSKDLVFTQHLLLGLIAEEEHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAEGDTSLH 180

Query: 181 SAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 231
            AA+T HVPF+ISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR
Sbjct: 181 GAAVTAHVPFSISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 233

[Close]

BLAST of CmoCh01G010780.1 vs. NCBI nr
Match: gi|778725486|ref|XP_011658949.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 8.9e-96
Identity = 192/237 (81.01%), Postives = 208/237 (87.76%), Query Frame = 1


Query: 1   MPATPSSNLFHQTSVFDCHKQTH------LISPATVSSSTCSLSVLSSSNLSGRRIHGFP 60
           MPA  SS+L +QTSVFDCHKQTH      LISPA++SSSTCSL VLS+S+LSGRRI+GFP
Sbjct: 1   MPAASSSSLINQTSVFDCHKQTHVHGCSRLISPASISSSTCSLGVLSNSHLSGRRINGFP 60

Query: 61  SSNLVSSFSPAFVTSFRSRNGLISGKIRRK-RRLRIPVISAIFERFTERAIKAVIFSQRE 120
           SSNLVS FS +F+T   SRN  ISG+I++K RRLRIP+ISAIFERFTERAIKAVIFSQRE
Sbjct: 61  SSNLVSLFSSSFIT---SRNCFISGRIQQKRRRLRIPIISAIFERFTERAIKAVIFSQRE 120

Query: 121 AKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWHTNDAIGDASV 180
           AKALSKDLVFTQHLLLGLIAEEEHNQS GGFLDSGLTL VARE VR IWH NDA  D S+
Sbjct: 121 AKALSKDLVFTQHLLLGLIAEEEHNQSPGGFLDSGLTLHVARETVRGIWHNNDAEADTSL 180

Query: 181 HSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQLILR 231
           H AA+T HVPF+ISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLA DDDGSIQLILR
Sbjct: 181 HGAAVTAHVPFSISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLATDDDGSIQLILR 234

[Close]

BLAST of CmoCh01G010780.1 vs. NCBI nr
Match: gi|645267916|ref|XP_008239294.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Prunus mume])

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAIKAVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIKAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEE+ ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEDQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780.1 vs. NCBI nr
Match: gi|595852922|ref|XP_007210399.1| (hypothetical protein PRUPE_ppa000853mg [Prunus persica])

HSP 1 Score: 164.1 bits (414), Expect = 3.2e-37
Identity = 92/186 (49.46%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 57  NLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQREAKA 116
           N  + FS +F + F++R        RR+ +LRI  +S +FERFTERAI+AVIFSQREA+A
Sbjct: 70  NPSTPFSSSFFSQFKARPFPSGSTARRRSKLRI--VSEVFERFTERAIQAVIFSQREARA 129

Query: 117 LSKDLVFTQHLLLGLIAEEEHNQ----SAGGFLDSGLTLSVAREAVRDIWH--------T 176
           L + +VFTQHLLLGLIAEEE ++    ++ GFL SG+T+  AREAV+ IWH        +
Sbjct: 130 LGRHMVFTQHLLLGLIAEEEQHRHLHPTSNGFLGSGITIDQAREAVQSIWHHHGQSQTAS 189

Query: 177 NDAIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGS 231
            D + +AS   AA    VPF+ISTKRV ++A+EYS+   H+FI PEH++I L  ADD  +
Sbjct: 190 ADLVPNASPGRAASATDVPFSISTKRVLEAALEYSRARAHNFIAPEHIAIGLFTADDGSA 249

[Close]

BLAST of CmoCh01G010780.1 vs. NCBI nr
Match: gi|568863205|ref|XP_006485047.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Citrus sinensis])

HSP 1 Score: 162.9 bits (411), Expect = 7.2e-37
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 53  FPSSNLVSSFSPAFVTSFRSRNGLISGKIRRKRRLRIPVISAIFERFTERAIKAVIFSQR 112
           F + +++S     F +++ S N   +    RKRR  IP IS++FERFTERA+KAVIFSQR
Sbjct: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIP-ISSVFERFTERAVKAVIFSQR 99

Query: 113 EAKALSKDLVFTQHLLLGLIAEEEHNQSAGGFLDSGLTLSVAREAVRDIWH------TND 172
           EAK+L KD+VFTQHLLLGLIAE+ H     GFL+SG+T+  AREAV  IWH      T+D
Sbjct: 100 EAKSLGKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 159

Query: 173 AIGDASVHSAAITPHVPFAISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLAADDDGSIQ 232
           A       S+A    +PF+ISTKRVF++AVEYS+  G++FI PEH+++ L    DDGS  
Sbjct: 160 AAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV-DDGSAG 217

The following BLAST results are available for this feature:

BLAST of CmoCh01G010780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPD_ARATH	1.5e-34	46.15	Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1	[more]
CLPD1_ORYSJ	7.2e-29	50.00	Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD1 ...	[more]
CLPD2_ORYSJ	1.3e-22	38.86	Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD2 ...	[more]
CLPC2_ORYSJ	1.2e-15	36.67	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 ...	[more]
CLPA_BRANA	2.3e-14	32.24	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]

BLAST of CmoCh01G010780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WQK4_PRUPE	2.3e-37	49.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000853mg PE=4 SV=1	[more]
A0A067ERC0_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1	[more]
A0A067EUZ5_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=4 SV=1	[more]
A0A067F2L3_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1	[more]
A0A067ERI3_CITSI	5.0e-37	51.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003088mg PE=3 SV=1	[more]

BLAST of CmoCh01G010780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51070.1	8.5e-36	46.15	Clp ATPase	[more]
AT5G50920.1	1.1e-14	29.72	CLPC homologue 1	[more]
AT3G48870.1	2.4e-14	30.23	Clp ATPase	[more]

BLAST of CmoCh01G010780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093951\|ref\|XP_008447802.1\|	1.3e-102	85.59	PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo]	[more]
gi\|778725486\|ref\|XP_011658949.1\|	8.9e-96	81.01	PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus]	[more]
gi\|645267916\|ref\|XP_008239294.1\|	2.5e-37	49.46	PREDICTED: chaperone protein ClpD, chloroplastic [Prunus mume]	[more]
gi\|595852922\|ref\|XP_007210399.1\|	3.2e-37	49.46	hypothetical protein PRUPE_ppa000853mg [Prunus persica]	[more]
gi\|568863205\|ref\|XP_006485047.1\|	7.2e-37	51.35	PREDICTED: chaperone protein ClpD, chloroplastic [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004176	Clp_N

Vocabulary: **Biological Process**
Term	Definition
GO:0019538	protein metabolic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G010780	CmoCh01G010780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010780.1	CmoCh01G010780.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010780.1.CDS.3	CmoCh01G010780.1.CDS.3	CDS
CmoCh01G010780.1.CDS.2	CmoCh01G010780.1.CDS.2	CDS
CmoCh01G010780.1.CDS.1	CmoCh01G010780.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010780.1.exon.3	CmoCh01G010780.1.exon.3	exon
CmoCh01G010780.1.exon.2	CmoCh01G010780.1.exon.2	exon
CmoCh01G010780.1.exon.1	CmoCh01G010780.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, N-terminal	GENE3D	G3DSA:1.10.1780.10		coord: 96..230 score: 8.7
IPR004176	Clp, N-terminal	PFAM	PF02861	Clp_N	coord: 111..136 score: 0.29coord: 195..231 score: 2.
IPR004176	Clp, N-terminal	unknown	SSF81923	Double Clp-N motif	coord: 97..217 score: 7.16
None	No IPR available	PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	coord: 85..231 score: 8.8
None	No IPR available	PANTHER	PTHR11638:SF118	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	coord: 85..231 score: 8.8