CmaCh20G009300.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G009300.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionEmbryogenesis-associated protein EMB8
LocationCma_Chr20 : 4575737 .. 4579373 (+)
Sequence length1325
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTGTCATATTGGCAGCCTGGACAAACCTCATCATGCTGAATATCTTTAAAGTCAGGAACACCATCAAGAAGTTTTTTTGGGGATATTTTCTACAACAACTGAAAACCCACCTGACCGAAACGAGCATGCCAACGAGTTGAGCTTGCATTATGACCAACTTTCTTGATATATTCATCACTAGCTTATGAAACATACAAAGATTCTTTTCTTTTTCCATAAAACTGGATATGAGCATCAACATGTTTCACATTAGAGAGTATTTGAACATCTTTAGGACAAAAAAGAACATACCTTCCTAAATCTGTTATTTGTGATACAGAAGCAAGATTTTTCTTCAAACCAGGAACATGATAAACGTCCTTGAGTAGAACACTCTCATCATTCAAATCTCCTTCTTTCGTCAGAGGATGCATTGAATTATCAGCTGTCACAATGACCTTCTTTTGACAATGTGGACGAACGTCTAATAGAAGAGTTTCGTTTCCAGTTGCATGATGAGAGCAGCCAGAATCGACAATTCATTCTTTATTGTAGTCTATAAAGGCATGAGCATTTGCAGAGACATCATCTTGGTGTACAGCTGAAGTCACATTTGTTGGCTGGTCAAGAATCTCAGTGGTTAAGTCGTGTTCCCAAATTGGATTGGAAGAACTTTTACTTTCATGTACAACATTTACTTCTGATTCTTGCATTTTAACTCAGTAATTTGGCTTGATATGGTCTGACTTTCCGCAACGATAACACACCACTTTCACCTGACAATCTTGTTTAAAATGACCAGGTTTTCCACATCTATAACAAGCTTTAAATGACTTCTTTGACGACTTCTCATTTCTGAGTTGATTCTCATTGCTTGATGAAGGTTTTGAATGAAAATTCTGTCTCCTTTAATCTTTGACATACAACACACCTTCGACTTTAGGGAAAGCTCATTTTGCTAGTCATTTGCTTAATGAAGGCTTCCAAATTGGAAAGAAGATTTTTCAATTCAATAACTGTGAAGGCTTACTTGCCCACCCATGTATTGAGGAAATAAAGGGTATAAAATCTTTTTGTAATCCACGAATGAGATTAAGCCGTAATCGAGCATCACTCACTGGCTCCACAGCATCTAATTCTAAAATTTCAGAACACAGATTTTTCACTTTCAAGAAATATTCTTCAATAGAAAAATTATCTTGAGTTAACATAGCTAGTTCATTCTCTAGAAATTGCAATCGAGCAGTATTTTTCTTAGTGAACAACTTTTGAAGTGTTTCTCATACTTGCTTTGGTGACTTTAAATCACAAACATGATCAATATATTCCTTGTTAATCAAAGTTCCCAAGGTAAATTAGGCTTTTCCACATTTGTTCTCCCATTGTCGGCTTAATTCTATATTCGGTGGAGTATCTGCTGGAATTTCTATATATCACCCCAATTAAATTCTACAAATCTTGCCATTGTAGATAAGCTTCCATACATAACTTCCAATAACTATAGTTATTGCCAATAAGCTTTTCCATAACTACACCCAGGAGCAGTTCCACCCTTCATCTCCTTTGAGTAATAATATCAAACTCTTGTCACTAACTTGCTCTGATACCAACAGATACAATATCTACCACTCAAAAGTGTGAATAGATAATAAAATATTATTACTCAACTAAAAGAATACATATTTAAGAATAAATAAAATTGGGATGGAAGGTTCAATCTTGATATTCACCACCTTTAAATAGGATACAAGATATTAACTAATATCTACGGACTAAATCTTGAAAATAAAATAAAATATACTACAAATCAAATTTAACTAATTATAAATATCTGAAATATATTTTCAAACTGATATAGTCTTCAAATATTAAATGATTACCAATATCATATATTACAATAACTTATTTAAATTCGAAATAAGTTGCACTAAATTATGACAGTTACTTATGGCAAATAAGTAAACTCAAATTATCCCCGGGAATGGATTCTTGCCTTCAGAGGCTTTTTCATGACAACCGTAAGCTCTAACTTCTCCGACAGATCAACTTCGTCTCCCTCCACGGCCTTCCATTCCGACCGCCAAACCAAATTAGCAAGGAAATACTCCAAATGAAGAATCGCCAGACCAAATCCTGGGCATATCCTCCTCCCTGCTCCAAACGGCATCATCTTTATCTCCTTGCTCCCTGTTATATCAAACTCCGCCACTTCTGCTTCTTCTTTCCCTCCTTTCATGAACCGCTCCGGCATAAACGTCGCCGGATCTTCCCACACTTTTGGATCCCAACCCATCTCCGCCACCATGAAATCTACCGTCCCATCCTTTGGTATCACGTAATTTTCCAACTCTGTTTCTTCTTTCACTGCGTGTGGTAACACGAAATGCCCTGGTGGGTGTCTTCTTAATCCTTCCAAAACCACCGCTTTCAGATATGGAACCTTCCGCAAATCCTCTTCCTTCACCTCCTCCCCTGTTCCATCCCCCATTACTCCTTTTATCTCTGCAAAAAGCTTGTGTTGGATTTCTGGGTATTTCACTAAATTCGCCATTATCCATTGCAGGGCCGTCGACGTGGTGTCGGTGCCGGCGTTGAGAAATTCCGAGCATATGGTCACAATCTCCTCATTGGTAAGCTTTCTATTTTCCTCGTCGGGTATCTCCAAATCGAGAAGTGTGTCCGCATATGACACCACGAATTCTTCTTTTTCTTCTTCAGTTTCGGCTCTGTTTGCTCTGTTTGCTCTGTTTACTCTGTTTTGATTGGCCTTCCGCCGAGCTTCAATCAATGGAATTATGACATCCTCTTGGTTCTTTCTTAGTTGGAGAAGCGTCTGCCAGCGTTTTCGGAGCAAAAACTTGGTGAATTTAGGCCAGAAATTGAGAACATTGAAACGCTCAAAACTCAATACAACCGCTCGCTCTACGTCCATGATTTCCCTGATATGGGATTCGTCAAGCCTATCCCCAAAGCACATCAACACCAACAAACAAAACATGGCGTAGTGAAAATGATCGATGACGGTAACGGGAGTGTCAGATTTCGAATGAGAAACAAGCCGATTAATAAGAATATCCAAAACCCACTTGCGAGCTCGATTATAGGACTTAACCCGAGAAGATTGAAGGATTTGGGAAGTGAGATTGCGGCGGAGGAGGCGCCAGAGTGGGCCGTAAGAGGCAGAGCTGATACTGTGTTGGTTACTGGTTAAGAGCTTGCTAACGGGTTGCGCCGGTGGTCGGCCGGAAAACTGAGCACCGTTTTGGACGAGGATCTTGTGGGCAATTGAGTGGTCGGCGATGAAGATGGAGAGGCGAGAGCCTCTGCGGAGGGTGACGATGGGGCCATATTTGGCGACAGCGGTGCGAAGGTAAGACTCCAATTGGAGATTGGATGTGCGGAGCCATAGGAAAGTGGAGATGATGGGGATTGAAGGAGGGCCTGGTGGAAGCTTTGTGGAGCTTCGAAAATGGCTTAAAATGGAGCTTAGAACATAGCTGATGCAGAGGGAGACGACGATGATAAACCACATCGCCATTTTCTCTGCTTGTTATTTTTGTTGAATCCAATCAAAATACTCATACCCACATATAACATATATATATATAGATATATATGCAAGTAATATGTATGTATATTCCAACTCGTCCC

mRNA sequence

ATGAGATTTGTCATATTGGCAGCCTGGACAAACCTCATCATGCTGAATATCTTTAAAGTCAGGAACACCATCAAGAAAATCGCCAGACCAAATCCTGGGCATATCCTCCTCCCTGCTCCAAACGGCATCATCTTTATCTCCTTGCTCCCTGTTATATCAAACTCCGCCACTTCTGCTTCTTCTTTCCCTCCTTTCATGAACCGCTCCGGCATAAACGTCGCCGGATCTTCCCACACTTTTGGATCCCAACCCATCTCCGCCACCATGAAATCTACCGTCCCATCCTTTGGTATCACATATGGAACCTTCCGCAAATCCTCTTCCTTCACCTCCTCCCCTGTTCCATCCCCCATTACTCCTTTTATCTCTGCAAAAAGCTTGTGTTGGATTTCTGGGTATTTCACTAAATTCGCCATTATCCATTGCAGGGCCGTCGACGTGGTGTCGGTGCCGGCGTTGAGAAATTCCGAGCATATGGTCACAATCTCCTCATTGTTGGAGAAGCGTCTGCCAGCGTTTTCGGAGCAAAAACTTGGTGAATTTAGGCCAGAAATTGAGAACATTGAAACGCTCAAAACTCAATACAACCGCTCGCTCTACGTCCATGATTTCCCTGATATGGGATTCGTCAAGCCTATCCCCAAAGCACATCAACACCAACAAACAAAACATGGCGTAGTGAAAATGATCGATGACGGTAACGGGAGTGTCAGATTTCGAATGAGAAACAAGCCGATTAATAAGAATATCCAAAACCCACTTGCGAGCTCGATTATAGGACTTAACCCGAGAAGATTGAAGGATTTGGGAAGTGAGATTGCGGCGGAGGAGGCGCCAGAGTGGGCCGTAAGAGGCAGAGCTGATACTGTGTTGGTTACTGGTTAAGAGCTTGCTAACGGGTTGCGCCGGTGGTCGGCCGGAAAACTGAGCACCGTTTTGGACGAGGATCTTGTGGGCAATTGAGTGGTCGGCGATGAAGATGGAGAGGCGAGAGCCTCTGCGGAGGGTGACGATGGGGCCATATTTGGCGACAGCGGTGCGAAGGTAAGACTCCAATTGGAGATTGGATGTGCGGAGCCATAGGAAAGTGGAGATGATGGGGATTGAAGGAGGGCCTGGTGGAAGCTTTGTGGAGCTTCGAAAATGGCTTAAAATGGAGCTTAGAACATAGCTGATGCAGAGGGAGACGACGATGATAAACCACATCGCCATTTTCTCTGCTTGTTATTTTTGTTGAATCCAATCAAAATACTCATACCCACATATAACATATATATATATAGATATATATGCAAGTAATATGTATGTATATTCCAACTCGTCCC

Coding sequence (CDS)

ATGAGATTTGTCATATTGGCAGCCTGGACAAACCTCATCATGCTGAATATCTTTAAAGTCAGGAACACCATCAAGAAAATCGCCAGACCAAATCCTGGGCATATCCTCCTCCCTGCTCCAAACGGCATCATCTTTATCTCCTTGCTCCCTGTTATATCAAACTCCGCCACTTCTGCTTCTTCTTTCCCTCCTTTCATGAACCGCTCCGGCATAAACGTCGCCGGATCTTCCCACACTTTTGGATCCCAACCCATCTCCGCCACCATGAAATCTACCGTCCCATCCTTTGGTATCACATATGGAACCTTCCGCAAATCCTCTTCCTTCACCTCCTCCCCTGTTCCATCCCCCATTACTCCTTTTATCTCTGCAAAAAGCTTGTGTTGGATTTCTGGGTATTTCACTAAATTCGCCATTATCCATTGCAGGGCCGTCGACGTGGTGTCGGTGCCGGCGTTGAGAAATTCCGAGCATATGGTCACAATCTCCTCATTGTTGGAGAAGCGTCTGCCAGCGTTTTCGGAGCAAAAACTTGGTGAATTTAGGCCAGAAATTGAGAACATTGAAACGCTCAAAACTCAATACAACCGCTCGCTCTACGTCCATGATTTCCCTGATATGGGATTCGTCAAGCCTATCCCCAAAGCACATCAACACCAACAAACAAAACATGGCGTAGTGAAAATGATCGATGACGGTAACGGGAGTGTCAGATTTCGAATGAGAAACAAGCCGATTAATAAGAATATCCAAAACCCACTTGCGAGCTCGATTATAGGACTTAACCCGAGAAGATTGAAGGATTTGGGAAGTGAGATTGCGGCGGAGGAGGCGCCAGAGTGGGCCGTAAGAGGCAGAGCTGATACTGTGTTGGTTACTGGTTAA

Protein sequence

MRFVILAAWTNLIMLNIFKVRNTIKKIARPNPGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPISATMKSTVPSFGITYGTFRKSSSFTSSPVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTISSLLEKRLPAFSEQKLGEFRPEIENIETLKTQYNRSLYVHDFPDMGFVKPIPKAHQHQQTKHGVVKMIDDGNGSVRFRMRNKPINKNIQNPLASSIIGLNPRRLKDLGSEIAAEEAPEWAVRGRADTVLVTG
Homology
[Close]
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match: A0A0E0EZV5_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 79/181 (43.65%), Postives = 94/181 (51.93%), Query Frame = 1 

Query: 27  IARPNPGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPIS 86
           +A P+P  ILLP PNGII  S LPV S  + S    PP  NRSG+N  G SH+  S PIS
Sbjct: 37  MATPSPAQILLPTPNGIIRTSRLPVTSTPSPS----PPARNRSGMNSIGFSHSLSSLPIS 96

Query: 87  ATMKSTVPSFGITY------------------GTFRKSSSFT---------SSPV----- 146
           ATMK TV   G+ Y                  G  R+ S  T         SS V     
Sbjct: 97  ATMKFTVAPLGMRYPPTSVSSAILCGSTKWAGGCLRRPSRMTAFRYGMSCVSSSVISSWS 156

Query: 147 -PSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTISSLLEKRLPAF 175
            PS +   IS+ SL W+ G+ T  A+IHC AV VVSVPALRNSE  +T SS +  R P+ 
Sbjct: 157 SPSLVLDLISSWSLDWMDGFLTSSAMIHCSAVAVVSVPALRNSEESITSSSSVRARSPSV 213

[Close]
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match: A0A0P0XW62_ORYSJ (Os10g0514550 protein OS=Oryza sativa subsp. japonica GN=Os10g0514550 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 76/191 (39.79%), Postives = 95/191 (49.74%), Query Frame = 1 

Query: 15  LNIFKVRNTIKKIARPNPGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVA 74
           L I   + +   +A  +P  IL P PNGI+ I LLPV S  + S    PP  N SG+N  
Sbjct: 25  LTILATKYSRCSMAVLSPAQILRPTPNGIMRIPLLPVTSTPSPS----PPGRNLSGMNSI 84

Query: 75  GSSHTFGSQPISATMKSTVPSFGITY------------------GTFRKSSSFTS----- 134
           G SH+F S PISATMK TV   G+ Y                  G FR+ S  T+     
Sbjct: 85  GFSHSFSSLPISATMKFTVAPLGMRYPPTSMSSAALCGSAKWPGGCFRRPSRMTAFRYGI 144

Query: 135 --------SPVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTIS 175
                   S   S +   IS+ SL W+ G+ T  A+IHC  VD+VSVPA RNSE  +TIS
Sbjct: 145 FWVSSSVISSWSSLVLDLISSWSLDWMDGFLTSSAMIHCSVVDIVSVPASRNSEQSLTIS 204

[Close]
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match: Q0IWE4_ORYSJ (Os10g0515100 protein OS=Oryza sativa subsp. japonica GN=Os10g0515100 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 100 YGTFRKSSSFTSS---PVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNS 159
           YG    SSS TS    P P P+   IS+ S  W+ G+ T  A+IHC AVDVVSVPALRNS
Sbjct: 18  YGMSWMSSSETSRWPPPPPPPVLAMISSWSFDWMDGFLTSSAMIHCSAVDVVSVPALRNS 77

Query: 160 EHMVTISSLLEKRLPA 173
           E  +TISS +  RLP+
Sbjct: 78  EQRLTISSSVSGRLPS 93

[Close]
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match: A0A0E0GXB4_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 67/177 (37.85%), Postives = 80/177 (45.20%), Query Frame = 1 

Query: 30  PNPGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPISATM 89
           P PG  L PAPNGII  SL P    S  + S+ PP MN SG N +GS H   S+P+S  M
Sbjct: 106 PMPGQYLRPAPNGIILTSLGP---GSGPTPSASPPAMNLSGRNSSGSVHALPSRPMSPRM 165

Query: 90  KST-VPSFGI-----------------TYGTFRKSSSFTSSPVPSPIT---PFISAK--- 149
           K T  P  G                  T G  R+ S  T+      +    P+ SA    
Sbjct: 166 KCTRAPPSGRERCSTACGERTSRMVSGTGGCMRRLSRITARRYAGVVPRSPPWWSAAATT 225

Query: 150 ---SLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTISSLLEKR---LPAFSEQ 177
              SL WISG  T+ A +H      VSVP LRNS    TISS +  R    P+ S Q
Sbjct: 226 WRHSLSWISGSMTRCARVHSTHDTTVSVPPLRNSATRPTISSSVSARPELRPSLSSQ 279

[Close]
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match: K3YU72_SETIT (Uncharacterized protein OS=Setaria italica PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 55/149 (36.91%), Postives = 64/149 (42.95%), Query Frame = 1 

Query: 32  PGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPISATMKS 91
           PGHIL PAP GII ISLLP            PP  NRSG N   + HT            
Sbjct: 46  PGHILRPAPKGIILISLLP----------PSPPSRNRSGRNSRAAVHT------------ 105

Query: 92  TVPSFGITYGTFRKSSSFTSSPVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVP 151
                   YG          + +  P   F S+ +L W SG+FT  A+IH   V VVSVP
Sbjct: 106 -----AFRYGI---------ACMSPPSLDFTSSCTLAWTSGWFTSSAMIHSTRVTVVSVP 158

Query: 152 ALRNSEHMVTISSLLEKRLPAFSEQKLGE 181
            LR SE  +TIS  L   L      +  E
Sbjct: 166 PLRISEQRLTISVSLPVTLVGVGNSQRAE 158

[Close]
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match: gi|937936734|dbj|BAT11648.1| (Os10g0514550 [Oryza sativa Japonica Group])

HSP 1 Score: 104.0 bits (258), Expect = 4.6e-19
Identity = 76/191 (39.79%), Postives = 95/191 (49.74%), Query Frame = 1 

Query: 15  LNIFKVRNTIKKIARPNPGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVA 74
           L I   + +   +A  +P  IL P PNGI+ I LLPV S  + S    PP  N SG+N  
Sbjct: 25  LTILATKYSRCSMAVLSPAQILRPTPNGIMRIPLLPVTSTPSPS----PPGRNLSGMNSI 84

Query: 75  GSSHTFGSQPISATMKSTVPSFGITY------------------GTFRKSSSFTS----- 134
           G SH+F S PISATMK TV   G+ Y                  G FR+ S  T+     
Sbjct: 85  GFSHSFSSLPISATMKFTVAPLGMRYPPTSMSSAALCGSAKWPGGCFRRPSRMTAFRYGI 144

Query: 135 --------SPVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTIS 175
                   S   S +   IS+ SL W+ G+ T  A+IHC  VD+VSVPA RNSE  +TIS
Sbjct: 145 FWVSSSVISSWSSLVLDLISSWSLDWMDGFLTSSAMIHCSVVDIVSVPASRNSEQSLTIS 204

[Close]
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match: gi|113639666|dbj|BAF26971.1| (Os10g0515100 [Oryza sativa Japonica Group])

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 100 YGTFRKSSSFTSS---PVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNS 159
           YG    SSS TS    P P P+   IS+ S  W+ G+ T  A+IHC AVDVVSVPALRNS
Sbjct: 18  YGMSWMSSSETSRWPPPPPPPVLAMISSWSFDWMDGFLTSSAMIHCSAVDVVSVPALRNS 77

Query: 160 EHMVTISSLLEKRLPA 173
           E  +TISS +  RLP+
Sbjct: 78  EQRLTISSSVSGRLPS 93

[Close]
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match: gi|937936743|dbj|BAT11657.1| (Os10g0516000, partial [Oryza sativa Japonica Group])

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 106 SSSFTSSPVPSPITPFISAKSLCWISGYFTKFAIIHCRAVDVVSVPALRNSEHMVTISSL 165
           +SS  +S   SP+   IS+ S  W+ G+ T  A+IHC AVDVVSVPALRNSE  + ISS 
Sbjct: 4   TSSSVTSGWSSPVLDLISSWSFDWMDGFLTSSAMIHCSAVDVVSVPALRNSEQSLMISSS 63

Query: 166 LEKRLPA 173
           +  RLP+
Sbjct: 64  VSARLPS 70

[Close]
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match: gi|937936732|dbj|BAT11646.1| (Os10g0514425 [Oryza sativa Japonica Group])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 32  PGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPISATMKS 91
           P HIL P PNGI+ I LLPV+S  + S    PP  N SG+N  G SH+  S PISATMK 
Sbjct: 16  PAHILRPTPNGIMRILLLPVMSTPSPS----PPGRNLSGMNCIGFSHSLSSLPISATMKF 75

Query: 92  TVPSFGITYGTFRKSSS 109
           TV   G+ Y     SS+
Sbjct: 76  TVAPLGMRYPPTSMSSA 88

[Close]
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match: gi|734348166|gb|KHN11744.1| (Embryogenesis-associated protein EMB8 [Glycine soja])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 32  PGHILLPAPNGIIFISLLPVISNSATSASSFPPFMNRSGINVAGSSHTFGSQPISATMKS 91
           PGHILLPAPNGII ISLLP++S       S P FMN SG+   GSS    S PISAT K 
Sbjct: 211 PGHILLPAPNGIILISLLPIMSKFVPPFCS-PLFMNLSGLKAKGSSQAVESLPISATRKF 270

Query: 92  T 93
           T
Sbjct: 271 T 270

The following BLAST results are available for this feature:
BLAST of CmaCh20G009300.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G009300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0EZV5_9ORYZ4.5e-2143.65Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A0A0P0XW62_ORYSJ3.2e-1939.79Os10g0514550 protein OS=Oryza sativa subsp. japonica GN=Os10g0514550 PE=4 SV=1[more]
Q0IWE4_ORYSJ2.3e-0953.95Os10g0515100 protein OS=Oryza sativa subsp. japonica GN=Os10g0515100 PE=4 SV=1[more]
A0A0E0GXB4_ORYNI3.9e-0937.85Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
K3YU72_SETIT2.5e-0836.91Uncharacterized protein OS=Setaria italica PE=4 SV=1[more]
BLAST of CmaCh20G009300.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh20G009300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937936734|dbj|BAT11648.1|4.6e-1939.79Os10g0514550 [Oryza sativa Japonica Group][more]
gi|113639666|dbj|BAF26971.1|3.3e-0953.95Os10g0515100 [Oryza sativa Japonica Group][more]
gi|937936743|dbj|BAT11657.1|1.8e-0752.24Os10g0516000, partial [Oryza sativa Japonica Group][more]
gi|937936732|dbj|BAT11646.1|6.9e-0750.65Os10g0514425 [Oryza sativa Japonica Group][more]
gi|734348166|gb|KHN11744.1|1.2e-0660.66Embryogenesis-associated protein EMB8 [Glycine soja][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh20G009300CmaCh20G009300gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh20G009300.1CmaCh20G009300.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G009300.1.exon.4CmaCh20G009300.1.exon.4exon
CmaCh20G009300.1.exon.3CmaCh20G009300.1.exon.3exon
CmaCh20G009300.1.exon.2CmaCh20G009300.1.exon.2exon
CmaCh20G009300.1.exon.1CmaCh20G009300.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G009300.1.CDS.1CmaCh20G009300.1.CDS.1CDS
CmaCh20G009300.1.CDS.2CmaCh20G009300.1.CDS.2CDS
CmaCh20G009300.1.CDS.3CmaCh20G009300.1.CDS.3CDS
CmaCh20G009300.1.CDS.4CmaCh20G009300.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G009300.1.three_prime_UTR.1CmaCh20G009300.1.three_prime_UTR.1three_prime_UTR