CmaCh20G006000.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGTAACCAATTTTTTGGAAGATAATTCTTTGCTTTAATTGCTTATTTAAAGGAAAAAAAGAAAAATAAAACAGAGGATGGTTTTTGAGGTGGTCTTGTTTTTGTCATGTTTGTGTAATTAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA MSSSSSSMFHCPVIACSYSAAMDSAPSSPLPFSASFGSLSIGLSLPISIGALSPTPSPTVTQNSFPFLSNAYILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVHGFHKRF
BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42 Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41 Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2) HSP 1 Score: 167.2 bits (422), Expect = 2.3e-40 Identity = 83/147 (56.46%), Postives = 107/147 (72.79%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40 Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2) HSP 1 Score: 162.9 bits (411), Expect = 4.2e-39 Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47 Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47 Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: D7TEA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00930 PE=3 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 7.5e-43 Identity = 99/163 (60.74%), Postives = 119/163 (73.01%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: F6HID2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00960 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42 Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: B9GTW0_POPTR (Cellulose synthase family protein OS=Populus trichocarpa GN=POPTR_0002s21420g PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42 Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3) HSP 1 Score: 174.5 bits (441), Expect = 7.9e-44 Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4) HSP 1 Score: 171.4 bits (433), Expect = 6.7e-43 Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B) HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41 Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1) HSP 1 Score: 162.9 bits (411), Expect = 2.4e-40 Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein) HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39 Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111806|ref|XP_008455916.1| (PREDICTED: cellulose synthase-like protein B4 isoform X3 [Cucumis melo]) HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47 Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]) HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47 Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]) HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47 Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|778673431|ref|XP_011649989.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47 Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1
BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|778673434|ref|XP_004151939.2| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47 Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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