CmaCh20G006000 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cellulose synthase family protein
Location	Cma_Chr20 : 2818735 .. 2819575 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGTAACCAATTTTTTGGAAGATAATTCTTTGCTTTAATTGCTTATTTAAAGGAAAAAAAGAAAAATAAAACAGAGGATGGTTTTTGAGGTGGTCTTGTTTTTGTCATGTTTGTGTAATTAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

mRNA sequence

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

Coding sequence (CDS)

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

Protein sequence

MSSSSSSMFHCPVIACSYSAAMDSAPSSPLPFSASFGSLSIGLSLPISIGALSPTPSPTVTQNSFPFLSNAYILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVHGFHKRF

Homology

[Close]

BLAST of CmaCh20G006000 vs. Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FVTTADP  EPPI++ NT+LS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +  S+EF  +W   K EYE+L RR+E+A
Sbjct: 148 EASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSEFSKDWEITKREYEKLSRRVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F DF+N+KPN H
Sbjct: 208 TG---DSHWLDAEDDFEDFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVD+FVTTADP  EPP+I++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY V++RAPF YF    ++   +EF  +W   K EYE+L +++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F N+K N H
Sbjct: 208 TG---SSHWLDAEDDFEAFLNTKSNDH 231

[Close]

BLAST of CmaCh20G006000 vs. Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-40
Identity = 83/147 (56.46%), Postives = 107/147 (72.79%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPII++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KF +IW PFCKKY V++RAPFRYF   L +   + F  +W+ MK EY +L R++E+A
Sbjct: 148 EASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSVFSKDWKMMKREYVKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F+N+KPN H
Sbjct: 208 TG---DSHWLDADDDFEAFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI+++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +   +EF  +W   K EYE+L R++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATEGSEFSRDWEMTKREYEKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                     N + A   F+N+KPN H
Sbjct: 208 TGDSHLLGTDNELEA---FSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-39
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI++++TVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLD-SHGSTEFQYEWRRMKDEYEELHRRIEE 206
           EA KFA+IWVPFCKKY  ++RAP RYF + +  +    EF  +W + K EYE+L R++E+
Sbjct: 148 EASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVED 207

Query: 207 AAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A     +S   ++   F  F+N+KPN H
Sbjct: 208 ATG---DSHMLDVEDDFEAFSNTKPNDH 232

[Close]

BLAST of CmaCh20G006000 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV EVPPVD+FVTTADP LEPPII INTVLSVLA+EYPA+KLACYVSDD CS LTFYSL 
Sbjct: 90  RVEEVPPVDIFVTTADPMLEPPIITINTVLSVLAMEYPADKLACYVSDDACSPLTFYSLC 149

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSHGSTEFQYEWRRMKDEYEELHRRIEE 206
           +AL FA+IW+PFCKKYKVQ+RAPFRYFS   L S+ ST+F ++W ++KDEYEEL ++IEE
Sbjct: 150 QALNFAKIWLPFCKKYKVQVRAPFRYFSTTRLSSNESTQFHHDWTKIKDEYEELRQKIEE 209

Query: 207 AAAAPKNSSFS-NLMGAFPDFTNSKPNVH 234
           AA   K  ++   L G   DF+N+KP  H
Sbjct: 210 AA---KTITYGCELKGELADFSNAKPKNH 235

[Close]

BLAST of CmaCh20G006000 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPVLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLL 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EAL FA+IWVPFCKKY+VQ+RAPFRYFS DL   G+ EFQ EWRRMKDEYE+L R +EEA
Sbjct: 148 EALAFAKIWVPFCKKYEVQVRAPFRYFSGDLSFDGTEEFQCEWRRMKDEYEKLRRNVEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN     +M    DF+N + + H
Sbjct: 208 A---KNVVSPEIMRDLADFSNIESSNH 231

[Close]

BLAST of CmaCh20G006000 vs. TrEMBL
Match: D7TEA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00930 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.5e-43
Identity = 99/163 (60.74%), Postives = 119/163 (73.01%), Query Frame = 1


Query: 73  ILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYV 132
           + + ++ E     YRV E+PPVD+FVTTADP LEPPII +NTVLS+LAV+YPANKL+CYV
Sbjct: 74  VSYKTYPERLLQCYRVDELPPVDMFVTTADPMLEPPIITVNTVLSLLAVDYPANKLSCYV 133

Query: 133 SDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSH-GSTEFQYEWR 192
           SDDG S LTFY+L EA KFA++WVPFCKKY +Q RAPFRYFSR+ L SH  STEF  E+R
Sbjct: 134 SDDGASPLTFYALLEASKFAKLWVPFCKKYGIQTRAPFRYFSRELLPSHDNSTEFLQEYR 193

Query: 193 RMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           ++ DEYEEL RRIE A    K+ S       F  F+N K   H
Sbjct: 194 KIMDEYEELRRRIEHATL--KSISHELSTADFVAFSNIKKGSH 234

[Close]

BLAST of CmaCh20G006000 vs. TrEMBL
Match: F6HID2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00960 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 1


Query: 73  ILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYV 132
           + + ++ E     YRV E+PPVD+FVTTADP LEPPII +NTVLS+LAV+YPANKL+CYV
Sbjct: 74  VSYKTYPERLLQCYRVDELPPVDMFVTTADPMLEPPIITVNTVLSLLAVDYPANKLSCYV 133

Query: 133 SDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSH-GSTEFQYEWR 192
           SDDG S LTF++L EA KFA++WVPFCKKY +Q RAPFRYFSR+ L SH  S EF  E+R
Sbjct: 134 SDDGASPLTFFALLEASKFAKLWVPFCKKYGIQPRAPFRYFSRELLPSHDNSMEFLQEYR 193

Query: 193 RMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           ++K+EYEEL RRIE+A    K+ S+      F  F+N K   H
Sbjct: 194 KIKEEYEELRRRIEDATV--KSISYELSTADFVAFSNIKKGSH 234

[Close]

BLAST of CmaCh20G006000 vs. TrEMBL
Match: B9GTW0_POPTR (Cellulose synthase family protein OS=Populus trichocarpa GN=POPTR_0002s21420g PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           ++ E+PPVD+FVTTADP LEPPI+ +NTV+S+LAV+YPA+KLACYVSDDGCS  T+YSL 
Sbjct: 87  KIQELPPVDIFVTTADPVLEPPILTVNTVISLLAVDYPADKLACYVSDDGCSPTTYYSLV 146

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA++W PFCKK+ +Q+RAPFRYFS ++  + S+EFQ E+ +MKDEYEEL  +I + 
Sbjct: 147 EASKFAKLWAPFCKKHNIQVRAPFRYFSSEVPLNNSSEFQQEYNKMKDEYEELASKIND- 206

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
             A K S   NL G F  F+N +   H
Sbjct: 207 --ADKKSIERNLSGDFAAFSNIEGKNH 230

[Close]

BLAST of CmaCh20G006000 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3)

HSP 1 Score: 174.5 bits (441), Expect = 7.9e-44
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FVTTADP  EPPI++ NT+LS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +  S+EF  +W   K EYE+L RR+E+A
Sbjct: 148 EASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSEFSKDWEITKREYEKLSRRVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F DF+N+KPN H
Sbjct: 208 TG---DSHWLDAEDDFEDFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4)

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-43
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVD+FVTTADP  EPP+I++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY V++RAPF YF    ++   +EF  +W   K EYE+L +++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F N+K N H
Sbjct: 208 TG---SSHWLDAEDDFEAFLNTKSNDH 231

[Close]

BLAST of CmaCh20G006000 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI+++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +   +EF  +W   K EYE+L R++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATEGSEFSRDWEMTKREYEKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                     N + A   F+N+KPN H
Sbjct: 208 TGDSHLLGTDNELEA---FSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-40
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI++++TVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLD-SHGSTEFQYEWRRMKDEYEELHRRIEE 206
           EA KFA+IWVPFCKKY  ++RAP RYF + +  +    EF  +W + K EYE+L R++E+
Sbjct: 148 EASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVED 207

Query: 207 AAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A     +S   ++   F  F+N+KPN H
Sbjct: 208 ATG---DSHMLDVEDDFEAFSNTKPNDH 232

[Close]

BLAST of CmaCh20G006000 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39
Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P +D+FV TAD   E PII +NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KF +IW PFCKKY V++RAPFRYF   L +   + F  +W+ MK EY +L R++E+A
Sbjct: 148 EASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSVFSKDWKMMKREYVKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F+N+KPN H
Sbjct: 208 TG---DSHWLDADDDFEAFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000 vs. NCBI nr
Match: gi|659111806|ref|XP_008455916.1| (PREDICTED: cellulose synthase-like protein B4 isoform X3 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000 vs. NCBI nr
Match: gi|778673431|ref|XP_011649989.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV EVPPVD+FVTTADP LEPPII INTVLSVLA+EYPA+KLACYVSDD CS LTFYSL 
Sbjct: 90  RVEEVPPVDIFVTTADPMLEPPIITINTVLSVLAMEYPADKLACYVSDDACSPLTFYSLC 149

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSHGSTEFQYEWRRMKDEYEELHRRIEE 206
           +AL FA+IW+PFCKKYKVQ+RAPFRYFS   L S+ ST+F ++W ++KDEYEEL ++IEE
Sbjct: 150 QALNFAKIWLPFCKKYKVQVRAPFRYFSTTRLSSNESTQFHHDWTKIKDEYEELRQKIEE 209

Query: 207 AAAAPKNSSFS-NLMGAFPDFTNSKPNVH 234
           AA   K  ++   L G   DF+N+KP  H
Sbjct: 210 AA---KTITYGCELKGELADFSNAKPKNH 235

[Close]

BLAST of CmaCh20G006000 vs. NCBI nr
Match: gi|778673434|ref|XP_004151939.2| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPVLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLL 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EAL FA+IWVPFCKKY+VQ+RAPFRYFS DL   G+ EFQ EWRRMKDEYE+L R +EEA
Sbjct: 148 EALAFAKIWVPFCKKYEVQVRAPFRYFSGDLSFDGTEEFQCEWRRMKDEYEKLRRNVEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN     +M    DF+N + + H
Sbjct: 208 A---KNVVSPEIMRDLADFSNIESSNH 231

The following BLAST results are available for this feature:

BLAST of CmaCh20G006000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLB3_ARATH	1.4e-42	58.50	Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1	[more]
CSLB4_ARATH	1.2e-41	57.14	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1	[more]
CSLB6_ARATH	2.3e-40	56.46	Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2	[more]
CSLB2_ARATH	2.9e-40	56.46	Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1	[more]
CSLB1_ARATH	4.2e-39	54.73	Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2	[more]

BLAST of CmaCh20G006000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT64_CUCSA	1.3e-47	67.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1	[more]
A0A0A0LN39_CUCSA	1.3e-47	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1	[more]
D7TEA3_VITVI	7.5e-43	60.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00930 PE=3 SV=...	[more]
F6HID2_VITVI	1.7e-42	59.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00960 PE=3 SV=...	[more]
B9GTW0_POPTR	2.2e-42	59.18	Cellulose synthase family protein OS=Populus trichocarpa GN=POPTR_0002s21420g PE...	[more]

BLAST of CmaCh20G006000 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32530.1	7.9e-44	58.50	cellulose synthase-like B3	[more]
AT2G32540.1	6.7e-43	57.14	cellulose synthase-like B4	[more]
AT2G32620.1	1.7e-41	56.46	cellulose synthase-like B	[more]
AT2G32610.1	2.4e-40	54.73	cellulose synthase-like B1	[more]
AT4G15290.1	3.5e-39	54.42	Cellulose synthase family protein	[more]

BLAST of CmaCh20G006000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111806\|ref\|XP_008455916.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein B4 isoform X3 [Cucumis melo]	[more]
gi\|659111804\|ref\|XP_008455915.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]	[more]
gi\|659111802\|ref\|XP_008455914.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]	[more]
gi\|778673431\|ref\|XP_011649989.1\|	1.9e-47	67.79	PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus]	[more]
gi\|778673434\|ref\|XP_004151939.2\|	1.9e-47	67.35	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006000.1	CmaCh20G006000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 94..208 score: 6.3
None	No IPR available	unknown	Coil	Coil	coord: 189..209 scor
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 86..233 score: 1.1
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 86..233 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G006000	Cla010450	Watermelon (97103) v1	cmawmB525
CmaCh20G006000	MELO3C018829	Melon (DHL92) v3.5.1	cmameB513
CmaCh20G006000	CsGy2G025820	Cucumber (Gy14) v2	cgybcmaB217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G006000	Cucumber (Chinese Long) v3	cmacucB0650
CmaCh20G006000	Cucumber (Chinese Long) v3	cmacucB0675
CmaCh20G006000	Cucumber (Chinese Long) v3	cmacucB0684
CmaCh20G006000	Watermelon (97103) v2	cmawmbB580
CmaCh20G006000	Watermelon (97103) v2	cmawmbB582
CmaCh20G006000	Wax gourd	cmawgoB0685
CmaCh20G006000	Wax gourd	cmawgoB0702
CmaCh20G006000	Cucurbita maxima (Rimu)	cmacmaB157
CmaCh20G006000	Cucurbita maxima (Rimu)	cmacmaB443
CmaCh20G006000	Cucurbita maxima (Rimu)	cmacmaB477
CmaCh20G006000	Cucumber (Gy14) v1	cgycmaB0408
CmaCh20G006000	Cucumber (Gy14) v1	cgycmaB0852
CmaCh20G006000	Cucurbita moschata (Rifu)	cmacmoB540
CmaCh20G006000	Cucurbita moschata (Rifu)	cmacmoB547
CmaCh20G006000	Cucurbita moschata (Rifu)	cmacmoB552
CmaCh20G006000	Cucurbita moschata (Rifu)	cmacmoB561
CmaCh20G006000	Wild cucumber (PI 183967)	cmacpiB545
CmaCh20G006000	Wild cucumber (PI 183967)	cmacpiB576
CmaCh20G006000	Cucumber (Chinese Long) v2	cmacuB539
CmaCh20G006000	Cucumber (Chinese Long) v2	cmacuB569
CmaCh20G006000	Melon (DHL92) v3.5.1	cmameB502
CmaCh20G006000	Watermelon (Charleston Gray)	cmawcgB492
CmaCh20G006000	Watermelon (Charleston Gray)	cmawcgB494
CmaCh20G006000	Cucurbita pepo (Zucchini)	cmacpeB559
CmaCh20G006000	Cucurbita pepo (Zucchini)	cmacpeB562
CmaCh20G006000	Cucurbita pepo (Zucchini)	cmacpeB574
CmaCh20G006000	Cucurbita pepo (Zucchini)	cmacpeB578
CmaCh20G006000	Bottle gourd (USVL1VR-Ls)	cmalsiB501
CmaCh20G006000	Bottle gourd (USVL1VR-Ls)	cmalsiB513
CmaCh20G006000	Cucumber (Gy14) v2	cgybcmaB953
CmaCh20G006000	Melon (DHL92) v3.6.1	cmamedB579
CmaCh20G006000	Melon (DHL92) v3.6.1	cmamedB590
CmaCh20G006000	Melon (DHL92) v3.6.1	cmamedB603
CmaCh20G006000	Silver-seed gourd	carcmaB0041
CmaCh20G006000	Silver-seed gourd	carcmaB0472