CmaCh20G006000.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006000.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cellulose synthase family protein
Location	Cma_Chr20 : 2818735 .. 2819575 (-)
Sequence length	720

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGTAACCAATTTTTTGGAAGATAATTCTTTGCTTTAATTGCTTATTTAAAGGAAAAAAAGAAAAATAAAACAGAGGATGGTTTTTGAGGTGGTCTTGTTTTTGTCATGTTTGTGTAATTAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

mRNA sequence

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

Coding sequence (CDS)

ATGTCGTCATCTTCTTCCTCCATGTTTCACTGCCCTGTTATCGCCTGCTCTTATTCCGCCGCCATGGATTCAGCTCCCTCTTCGCCATTGCCTTTCTCTGCGAGCTTTGGTTCACTTTCTATTGGGCTCTCATTACCAATCTCAATTGGAGCCCTATCCCCAACGCCTTCTCCAACGGTAACCCAAAATTCATTCCCTTTCCTCTCCAATGCTTACATTCTTTTTTCTTCATTTTTTGAGTTTTATTTTTCGAAATACAGAGTATCTGAGGTTCCTCCGGTAGACGTATTCGTTACAACGGCGGACCCGGAGCTGGAGCCGCCGATAATTCTGATAAACACGGTGCTGTCGGTGTTAGCAGTGGAATATCCGGCCAATAAATTGGCTTGTTACGTCTCTGACGACGGCTGTTCATCACTCACGTTTTATTCCCTCTCTGAAGCTCTTAAATTTGCCCAAATTTGGGTGCCGTTTTGTAAGAAATATAAGGTCCAAATCAGGGCTCCGTTTAGGTATTTCTCTCGTGATTTAGACTCTCATGGATCAACGGAGTTTCAGTATGAATGGAGGAGGATGAAGGATGAGTACGAAGAGCTTCACCGGAGGATTGAGGAAGCCGCCGCCGCCCCCAAAAATTCTTCATTTAGTAACCTTATGGGCGCGTTCCCAGATTTCACTAACTCAAAGCCAAATGTTCATGGCTTTCACAAGAGATTTTAA

Protein sequence

MSSSSSSMFHCPVIACSYSAAMDSAPSSPLPFSASFGSLSIGLSLPISIGALSPTPSPTVTQNSFPFLSNAYILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVHGFHKRF

Homology

[Close]

BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FVTTADP  EPPI++ NT+LS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +  S+EF  +W   K EYE+L RR+E+A
Sbjct: 148 EASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSEFSKDWEITKREYEKLSRRVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F DF+N+KPN H
Sbjct: 208 TG---DSHWLDAEDDFEDFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVD+FVTTADP  EPP+I++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY V++RAPF YF    ++   +EF  +W   K EYE+L +++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F N+K N H
Sbjct: 208 TG---SSHWLDAEDDFEAFLNTKSNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-40
Identity = 83/147 (56.46%), Postives = 107/147 (72.79%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPII++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KF +IW PFCKKY V++RAPFRYF   L +   + F  +W+ MK EY +L R++E+A
Sbjct: 148 EASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSVFSKDWKMMKREYVKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F+N+KPN H
Sbjct: 208 TG---DSHWLDADDDFEAFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI+++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +   +EF  +W   K EYE+L R++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATEGSEFSRDWEMTKREYEKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                     N + A   F+N+KPN H
Sbjct: 208 TGDSHLLGTDNELEA---FSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-39
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI++++TVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLD-SHGSTEFQYEWRRMKDEYEELHRRIEE 206
           EA KFA+IWVPFCKKY  ++RAP RYF + +  +    EF  +W + K EYE+L R++E+
Sbjct: 148 EASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVED 207

Query: 207 AAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A     +S   ++   F  F+N+KPN H
Sbjct: 208 ATG---DSHMLDVEDDFEAFSNTKPNDH 232

[Close]

BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV EVPPVD+FVTTADP LEPPII INTVLSVLA+EYPA+KLACYVSDD CS LTFYSL 
Sbjct: 90  RVEEVPPVDIFVTTADPMLEPPIITINTVLSVLAMEYPADKLACYVSDDACSPLTFYSLC 149

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSHGSTEFQYEWRRMKDEYEELHRRIEE 206
           +AL FA+IW+PFCKKYKVQ+RAPFRYFS   L S+ ST+F ++W ++KDEYEEL ++IEE
Sbjct: 150 QALNFAKIWLPFCKKYKVQVRAPFRYFSTTRLSSNESTQFHHDWTKIKDEYEELRQKIEE 209

Query: 207 AAAAPKNSSFS-NLMGAFPDFTNSKPNVH 234
           AA   K  ++   L G   DF+N+KP  H
Sbjct: 210 AA---KTITYGCELKGELADFSNAKPKNH 235

[Close]

BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPVLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLL 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EAL FA+IWVPFCKKY+VQ+RAPFRYFS DL   G+ EFQ EWRRMKDEYE+L R +EEA
Sbjct: 148 EALAFAKIWVPFCKKYEVQVRAPFRYFSGDLSFDGTEEFQCEWRRMKDEYEKLRRNVEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN     +M    DF+N + + H
Sbjct: 208 A---KNVVSPEIMRDLADFSNIESSNH 231

[Close]

BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: D7TEA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00930 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.5e-43
Identity = 99/163 (60.74%), Postives = 119/163 (73.01%), Query Frame = 1


Query: 73  ILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYV 132
           + + ++ E     YRV E+PPVD+FVTTADP LEPPII +NTVLS+LAV+YPANKL+CYV
Sbjct: 74  VSYKTYPERLLQCYRVDELPPVDMFVTTADPMLEPPIITVNTVLSLLAVDYPANKLSCYV 133

Query: 133 SDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSH-GSTEFQYEWR 192
           SDDG S LTFY+L EA KFA++WVPFCKKY +Q RAPFRYFSR+ L SH  STEF  E+R
Sbjct: 134 SDDGASPLTFYALLEASKFAKLWVPFCKKYGIQTRAPFRYFSRELLPSHDNSTEFLQEYR 193

Query: 193 RMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           ++ DEYEEL RRIE A    K+ S       F  F+N K   H
Sbjct: 194 KIMDEYEELRRRIEHATL--KSISHELSTADFVAFSNIKKGSH 234

[Close]

BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: F6HID2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00960 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 1


Query: 73  ILFSSFFEFYFSKYRVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYV 132
           + + ++ E     YRV E+PPVD+FVTTADP LEPPII +NTVLS+LAV+YPANKL+CYV
Sbjct: 74  VSYKTYPERLLQCYRVDELPPVDMFVTTADPMLEPPIITVNTVLSLLAVDYPANKLSCYV 133

Query: 133 SDDGCSSLTFYSLSEALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSH-GSTEFQYEWR 192
           SDDG S LTF++L EA KFA++WVPFCKKY +Q RAPFRYFSR+ L SH  S EF  E+R
Sbjct: 134 SDDGASPLTFFALLEASKFAKLWVPFCKKYGIQPRAPFRYFSRELLPSHDNSMEFLQEYR 193

Query: 193 RMKDEYEELHRRIEEAAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           ++K+EYEEL RRIE+A    K+ S+      F  F+N K   H
Sbjct: 194 KIKEEYEELRRRIEDATV--KSISYELSTADFVAFSNIKKGSH 234

[Close]

BLAST of CmaCh20G006000.1 vs. TrEMBL
Match: B9GTW0_POPTR (Cellulose synthase family protein OS=Populus trichocarpa GN=POPTR_0002s21420g PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           ++ E+PPVD+FVTTADP LEPPI+ +NTV+S+LAV+YPA+KLACYVSDDGCS  T+YSL 
Sbjct: 87  KIQELPPVDIFVTTADPVLEPPILTVNTVISLLAVDYPADKLACYVSDDGCSPTTYYSLV 146

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA++W PFCKK+ +Q+RAPFRYFS ++  + S+EFQ E+ +MKDEYEEL  +I + 
Sbjct: 147 EASKFAKLWAPFCKKHNIQVRAPFRYFSSEVPLNNSSEFQQEYNKMKDEYEELASKIND- 206

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
             A K S   NL G F  F+N +   H
Sbjct: 207 --ADKKSIERNLSGDFAAFSNIEGKNH 230

[Close]

BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3)

HSP 1 Score: 174.5 bits (441), Expect = 7.9e-44
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FVTTADP  EPPI++ NT+LS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +  S+EF  +W   K EYE+L RR+E+A
Sbjct: 148 EASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSEFSKDWEITKREYEKLSRRVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F DF+N+KPN H
Sbjct: 208 TG---DSHWLDAEDDFEDFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4)

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-43
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVD+FVTTADP  EPP+I++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY V++RAPF YF    ++   +EF  +W   K EYE+L +++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F N+K N H
Sbjct: 208 TG---SSHWLDAEDDFEAFLNTKSNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI+++NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KFA+IWVPFCKKY +++RAPFRYF     +   +EF  +W   K EYE+L R++E+A
Sbjct: 148 EASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATEGSEFSRDWEMTKREYEKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                     N + A   F+N+KPN H
Sbjct: 208 TGDSHLLGTDNELEA---FSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-40
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P VD+FV TADP  EPPI++++TVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLD-SHGSTEFQYEWRRMKDEYEELHRRIEE 206
           EA KFA+IWVPFCKKY  ++RAP RYF + +  +    EF  +W + K EYE+L R++E+
Sbjct: 148 EASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVED 207

Query: 207 AAAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A     +S   ++   F  F+N+KPN H
Sbjct: 208 ATG---DSHMLDVEDDFEAFSNTKPNDH 232

[Close]

BLAST of CmaCh20G006000.1 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39
Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV ++P +D+FV TAD   E PII +NTVLS+LAV YPANKLACYVSDDGCS LT++SL 
Sbjct: 88  RVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLK 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EA KF +IW PFCKKY V++RAPFRYF   L +   + F  +W+ MK EY +L R++E+A
Sbjct: 148 EASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSVFSKDWKMMKREYVKLCRKVEDA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
                +S + +    F  F+N+KPN H
Sbjct: 208 TG---DSHWLDADDDFEAFSNTKPNDH 231

[Close]

BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111806|ref|XP_008455916.1| (PREDICTED: cellulose synthase-like protein B4 isoform X3 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPLLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLI 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EALKFA+IWVPFCKKY+V++RAPFRYFS DL   G+ EFQ EW RMKDEYE+L R IEEA
Sbjct: 148 EALKFAKIWVPFCKKYEVEVRAPFRYFSGDLSFDGTEEFQCEWSRMKDEYEKLRRNIEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN    +L     DF+N + N H
Sbjct: 208 A---KNVVSPDLTSDLADFSNIESNNH 231

[Close]

BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|778673431|ref|XP_011649989.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV EVPPVD+FVTTADP LEPPII INTVLSVLA+EYPA+KLACYVSDD CS LTFYSL 
Sbjct: 90  RVEEVPPVDIFVTTADPMLEPPIITINTVLSVLAMEYPADKLACYVSDDACSPLTFYSLC 149

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRD-LDSHGSTEFQYEWRRMKDEYEELHRRIEE 206
           +AL FA+IW+PFCKKYKVQ+RAPFRYFS   L S+ ST+F ++W ++KDEYEEL ++IEE
Sbjct: 150 QALNFAKIWLPFCKKYKVQVRAPFRYFSTTRLSSNESTQFHHDWTKIKDEYEELRQKIEE 209

Query: 207 AAAAPKNSSFS-NLMGAFPDFTNSKPNVH 234
           AA   K  ++   L G   DF+N+KP  H
Sbjct: 210 AA---KTITYGCELKGELADFSNAKPKNH 235

[Close]

BLAST of CmaCh20G006000.1 vs. NCBI nr
Match: gi|778673434|ref|XP_004151939.2| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 87  RVSEVPPVDVFVTTADPELEPPIILINTVLSVLAVEYPANKLACYVSDDGCSSLTFYSLS 146
           RV E+PPVDVFVTTADP LEPP+I +NTVLS+LA +YPAN+LA YVSDDGCS +TFYSL 
Sbjct: 88  RVDELPPVDVFVTTADPVLEPPLITVNTVLSLLAADYPANRLAVYVSDDGCSPITFYSLL 147

Query: 147 EALKFAQIWVPFCKKYKVQIRAPFRYFSRDLDSHGSTEFQYEWRRMKDEYEELHRRIEEA 206
           EAL FA+IWVPFCKKY+VQ+RAPFRYFS DL   G+ EFQ EWRRMKDEYE+L R +EEA
Sbjct: 148 EALAFAKIWVPFCKKYEVQVRAPFRYFSGDLSFDGTEEFQCEWRRMKDEYEKLRRNVEEA 207

Query: 207 AAAPKNSSFSNLMGAFPDFTNSKPNVH 234
           A   KN     +M    DF+N + + H
Sbjct: 208 A---KNVVSPEIMRDLADFSNIESSNH 231

The following BLAST results are available for this feature:

BLAST of CmaCh20G006000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLB3_ARATH	1.4e-42	58.50	Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1	[more]
CSLB4_ARATH	1.2e-41	57.14	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1	[more]
CSLB6_ARATH	2.3e-40	56.46	Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2	[more]
CSLB2_ARATH	2.9e-40	56.46	Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1	[more]
CSLB1_ARATH	4.2e-39	54.73	Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2	[more]

BLAST of CmaCh20G006000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT64_CUCSA	1.3e-47	67.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1	[more]
A0A0A0LN39_CUCSA	1.3e-47	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1	[more]
D7TEA3_VITVI	7.5e-43	60.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00930 PE=3 SV=...	[more]
F6HID2_VITVI	1.7e-42	59.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00960 PE=3 SV=...	[more]
B9GTW0_POPTR	2.2e-42	59.18	Cellulose synthase family protein OS=Populus trichocarpa GN=POPTR_0002s21420g PE...	[more]

BLAST of CmaCh20G006000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32530.1	7.9e-44	58.50	cellulose synthase-like B3	[more]
AT2G32540.1	6.7e-43	57.14	cellulose synthase-like B4	[more]
AT2G32620.1	1.7e-41	56.46	cellulose synthase-like B	[more]
AT2G32610.1	2.4e-40	54.73	cellulose synthase-like B1	[more]
AT4G15290.1	3.5e-39	54.42	Cellulose synthase family protein	[more]

BLAST of CmaCh20G006000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111806\|ref\|XP_008455916.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein B4 isoform X3 [Cucumis melo]	[more]
gi\|659111804\|ref\|XP_008455915.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]	[more]
gi\|659111802\|ref\|XP_008455914.1\|	1.5e-47	68.03	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]	[more]
gi\|778673431\|ref\|XP_011649989.1\|	1.9e-47	67.79	PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus]	[more]
gi\|778673434\|ref\|XP_004151939.2\|	1.9e-47	67.35	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G006000	CmaCh20G006000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006000.1	CmaCh20G006000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006000.1.CDS.2	CmaCh20G006000.1.CDS.2	CDS
CmaCh20G006000.1.CDS.1	CmaCh20G006000.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006000.1.exon.2	CmaCh20G006000.1.exon.2	exon
CmaCh20G006000.1.exon.1	CmaCh20G006000.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 94..208 score: 6.3
None	No IPR available	unknown	Coil	Coil	coord: 189..209 scor
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 86..233 score: 1.1
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 86..233 score: 1.1