CmaCh20G005650.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI
BLAST of CmaCh20G005650.1 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2) HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68 Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2) HSP 1 Score: 243.8 bits (621), Expect = 1.1e-63 Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3) HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51 Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3) HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51 Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2) HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51 Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TrEMBL
Match: A0A061DSN8_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_005216 PE=3 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 1.5e-73 Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 5.5e-73 Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 7.2e-73 Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TrEMBL
Match: F8RW94_HEVBR (Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 9.4e-73 Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TrEMBL
Match: A0A0A0LJ19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72 Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 268.9 bits (686), Expect = 1.9e-72 Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 245.0 bits (624), Expect = 2.9e-65 Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 5.5e-74 Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. NCBI nr
Match: gi|590721556|ref|XP_007051647.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]) HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73 Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. NCBI nr
Match: gi|645247435|ref|XP_008229835.1| (PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume]) HSP 1 Score: 282.3 bits (721), Expect = 4.7e-73 Identity = 138/145 (95.17%), Postives = 144/145 (99.31%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. NCBI nr
Match: gi|224129090|ref|XP_002320498.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa]) HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73 Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1
BLAST of CmaCh20G005650.1 vs. NCBI nr
Match: gi|658013696|ref|XP_008342155.1| (PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica]) HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73 Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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