CmaCh20G001550.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTATTGGCCGTGGATAAAAATATTCCACCAAGCATGAAATGTAATTCTCCTACCAAGGTAGGTTTTTCTGTTCCTCGAAGATGAGAGGGATGTACGATTTAAATTTAATGATAATCTTGGTTTATCATTAATTTCTCCTAGTAACTATCGGCACTATTTAGGCTCAATTTGCAACCTTAGTCCCCAAGTTTGGGGGGGTGGGGTCCCTGATCTCTAGCTCTCTTTATATTATTATTTTTATCTACAATTTGAATAAATATTAGAAAAACTAGCATGAGGGATGGTGAGCCAATTGAGCAGAGATGAACTCATTTAGATTCTCTACAATGGTATGATATTGTTTATTTTGAACATAAGCTCTCATTGTCGGACTCCCTCCCAACAATCCTCAACAATCATTCCCTCGATCAAAGTACACCACAAAACCTCTCCTGAGCCCTATGTAGCCCTCAAACGACCTCTCCTTAATCAAGGTTCGACCTCTTTCTTTGGAACCCTCAAACAAAGTACACCATTTGTTCGATACTTGAGTCACTTTTGACTACACATTCGAGGCTACCAACTTCTTTGTTGACACTTGAGGATTCAATTAGTATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTAGGATCTTCACAATTGTATGATATTGTTCACTTTCAGCATAAGCTTTCATAGTTTTGCTTTTGGTTTCCTCGTAAGGCCTCGTACCAATGAAGATGTATTCATTATTTATAAACCCATGATCATCTCCTTAACTAGCCAACGTTGGACTCCCTCCCAACAATCCTCAACAATATGTACTATCGACTAAGAAGTCGAAAGTTTGAATGTCTACCATACACATTCTAGAACTAGAAAGCATGAAGAATCAACCAATTATGATCAGCAACATTGCTGTAAATTTCATTTTCTTCCAATTTTAGGGCCTAAAGGCATATATTTCTGTCCGTAGGCTTACAAGTATGATACCTTTATCTATGTTTCCATTAAAATGCCGTTATATCTTGGTGAGACATTCATTTCTATTACCATTTTGTCAAAGTAAAATTATTGTACCCTCCTATTTTACTAGCCTTGTGTGTCTTCCTTCTAGAAACATATTCTGGTCCTTTTTTTTTATTTTTTAATTTCATCTTTTAACTGTTTAAGATTGTTTTATCAATTTGTGTCTTATTATTCTTTTTATCAAATGTCTACTCTCACTAAATGTTTTGATAAAACTAATATGTGAATTGAACTGGGTATGTTTTTTTGGGTGCCAATTGTTAGTAGAATATCTTTCTCAAGGGTTCCATCACCTATGCCACCGAGTCATTTGGTGTTGGGTAAGTTAATCTACCTCATGTCATATAAAATGGATTATGTTCAATTTTATAGGTTGGAATATCTGAAGATAGTTCAAGTAATTAGCCTATCATATCATTTACGAAAAGCTGGAAATTTGGTATTAAGAAGGGCATGTTTGCCTCATCAAGTGACCAAAGTTATTTGTTGTACCTAATTGGTGTCATTTTTCTATAGTTATGGTAGGCAATTAACTCGTTTTACTGAGTTATACTAATATATATTTTTTTTATCGTGTATAAGCGGGAATCTTGGGATATTTTACCCAAACTGATTCGTTAGCCAAGTCAAGTTTCTCCTAACTTAGCTTCCTGTGATCGTAAATTAGGTAATTGTCACATCTTTTTCATTAAGTTGTTCAAAAATATGCATTAGGTCTTATGATTGATTTTTCAATGTACATAACAAATGTATGCATGAACATCATATTCATCGTATAGTATAAGATGTAACGCATATAACACCGTGTAAATAACTTGGAGACCAGAGATTAAAAATGCCGAAGTCGGTCAACCGTGTAAATAAAGTTGAGTAGGGAAAATTGTTTTAGGATTTATATTAATGGTGGGCATAGAAATCCTGGAACAAAGATTTTCATTTTCCTAAAACAAAGATTTATTTTAATGTGGAGGCTTTGGAGGGAATACCAAACTCCAATTTTCTTGGTGTGGAATATGGACGACCATCACATTATTGATTTTTTCGAAATACAATGTTAGTCAACGTGACACCCACTGACCTACCCATCACTTAGTTTTTTTTCTTTTTCCGTTAACTTAGTGGGGCCTTTAAAGCCACCTCTAGCTTAGATTCATAAGTTATTCTATTCGACACTATTATTGATTAGAATATGTCACGCTTCAATTTCAACGACACATTACATTATTATTTGTCACAGTTTATATCTATTTATTCTCATAGAATCAAACATTCTAAGTCTCAACGACTGTACTTATGGTAGTACAAAATATATTAGTTAATTTAACATATGTGAAATTTTACCATCTCTCATACCTATTATTATTTTTCTTTTAAAAATATTTTTAAAAAATGGTCGGTTTGAAACTAATTAAGAAAATATAATTTTATAAAACATATTCATTTTAGAATTTTACTGAGAATTTGACACTTTTGAAAGCCAATGAATAAATTTAAATTTTAGAGGTATATTATACTTAATTCTTAGAATTAAATTCCAAGTTATTGGAGATTGGACCACCATGCATATTTAATCTTAAAGTCTTCGCAAGTTAAGCTATTCACGTCCTTATGTCGGCTAAATTCAAGTTATTTATATATATATATATGAATAAAAATAGAAAGTAATAATTAAATGCAAGAAACAATTAGATGAGAATTATGAGAGGAGCGTAATTAATAATTTATGGAGAGTGGAAAATATGAATAATTAATTGCTACTTCAACCACCCACCACCTACCATAGCAAATATGATATAGCATACATTTGGATACGGTTCATAAAAACGTATCCAATTATTCACAATATTCCCCTCTACTATCTTACCCCTTCAATAATTTAATCCACCTCTTTCACTCTCTCCTATAAATTCAATATTTTTACTATTTAATTAAAATTATATATTTTAATTAGCCAAATTCTACTCAATAATTCGTGGGATCTTAAATATTAAAATATTTTAAGTCATGTTAAATATATCCGAATAAATAAATTCATTGTTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACATTTATTTGCGCACAGTAAACTGAACAGTGTAGGGATAATTACTAATGTCTTCGGATATCTTTATCTTACGTGATTTTTGTATTTAAAAAAAAAAAAAAACCTAAATAAAATTTATATCATGATTTAAGAAAAACGTCACATTACATTATTTTTGTTATTGATTTGAATAAATTGATTTGAGACTGGGGACCAATCATTATAATTAGGGTTTAGCCTGGTATTCAATCTAGGCATGTTTCTTACCATTTAAACGCTAATTTTGCTTTTGTTTATGTAATTTTGACTCTCAAATTTTTATAACACGTATATTATCGTCTAAGATAAATATCATAATTGTATCACTCAAGCTAAGATAAATATTGTCCGTTTTGACCCGTTACGTGCGGCTGTCAGCTTCACGATTTTAAAACACGTATATTATCGAGAGGTTTCCACACCCTTGTAAGGAATGCTTTGTTTCACTCTCTATGAGGTCTCATAATAGTCCACTTAAAATTGAAAGGTTCGGATCTTAACAAGATTAAAAATTTGAATATACACGGAGACGATTAAAAATTCATAGATGTAACAGCACAAACTTACCTCTAGTAGATATTGTCTACTCTTCTATAAAGAGGTTTTCACGCCCTTCTAAAGAATGTTTGGTTACACTCTCAACCAATGTAGGGTCTCACAATAGTCCACTTAAAATTAAAAGGTTCGAGTCTTATCCGACACAAAGTTGACTAAAACTTTAGAAATGTGAAGAGGGAATAGGGTTAGGACATTGATATTGAAAGAGGGTCGTCTATAGTTATATAATTGAACATCAATAATAATAATAATAATAATAATAATAACAATAATGATGTGGTGAATGAATTAACTTCCAAGGGCCCCTCTCTTATTCTCATTATTCTTATTATTATTATTATTTAGTTAGGTTGGAATTCCCATATAATATCCTCACCCCTCATATCAAACCTCACTCAGTCAGTCAGTCACCCACAAATTCATCCGTCCTTTCTTCATTCTCTAAACTCCAATTTCCCTAACAAACCAAACTTGGTAAGCCTCTCTCACAGTCACACTGCGTAACCCTCTCTGATAAACTCATGTTCATTTGTTTTTCTTTTTTTGTTTTTTTTGCATGACTTTGAAGAGGACGATGAGCAAGAGGTCGAGGAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGATCGTCGTCGGACATATCAGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTCATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATGCCTAGCCAAGCCACACCGCC ATGTTATTGGCCGTGGATAAAAATATTCCACCAAGCATGAAATGTAATTCTCCTACCAAGTCAGTCAGTCACCCACAAATTCATCCGTCCTTTCTTCATTCTCTAAACTCCAATTTCCCTAACAAACCAAACTTGAGGACGATGAGCAAGAGGTCGAGGAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGATCGTCGTCGGACATATCAGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTCATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATGCCTAGCCAAGCCACACCGCC ATGTTATTGGCCGTGGATAAAAATATTCCACCAAGCATGAAATGTAATTCTCCTACCAAGTCAGTCAGTCACCCACAAATTCATCCGTCCTTTCTTCATTCTCTAAACTCCAATTTCCCTAACAAACCAAACTTGAGGACGATGAGCAAGAGGTCGAGGAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGATCGTCGTCGGACATATCAGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTCATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG MLLAVDKNIPPSMKCNSPTKSVSHPQIHPSFLHSLNSNFPNKPNLRTMSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKQQQQQQQQQHHA
BLAST of CmaCh20G001550.1 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 8.0e-30 Identity = 84/116 (72.41%), Postives = 89/116 (76.72%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TrEMBL
Match: M4F180_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11 Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TrEMBL
Match: V4M909_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TrEMBL
Match: A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11 Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TrEMBL
Match: R0HZX7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10014943mg PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.7e-11 Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein) HSP 1 Score: 75.5 bits (184), Expect = 3.2e-14 Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein) HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. TAIR10
Match: AT5G22270.1 (AT5G22270.1 unknown protein) HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07 Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus]) HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29 Identity = 84/116 (72.41%), Postives = 89/116 (76.72%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. NCBI nr
Match: gi|567200461|ref|XP_006407430.1| (hypothetical protein EUTSA_v10021790mg [Eutrema salsugineum]) HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. NCBI nr
Match: gi|674924808|emb|CDY08510.1| (BnaA05g27460D [Brassica napus]) HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11 Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. NCBI nr
Match: gi|727583833|ref|XP_010464878.1| (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]) HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11 Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1
BLAST of CmaCh20G001550.1 vs. NCBI nr
Match: gi|565478210|ref|XP_006296745.1| (hypothetical protein CARUB_v10014943mg [Capsella rubella]) HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11 Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
|