CmaCh17G012590.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012590.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Uncharacterised protein family SERF
Location	Cma_Chr17 : 8590325 .. 8593042 (-)
Sequence length	496

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGAGGAGGAGTAGAATCAGAGGATTTTTGTAATTTTGTTTTTGAAATTTTCTTTGTTGTGATTTCTTCAAATCCTGCTGATGATCGATGATTTTAGGCAACGAAATAGGTTAGAGTTAATAAAGTTTACATAGAGCGACTTTGTCGTAGATTTTGTGGTTTTATGTTTGTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGTTCCATTTCTCTTTCTTAGTTATCAAAATTCATCTTAAGTAACATTTATGAGCTTGATTTTCAAAAATTGACAACAAAAATTAATTAGTTACCAAAAGAATCTGTTTTGGAGTGAGAATTTGGGAAGTCGTTCTTTGATATTGAATGAATGGAGCTGTATTTGTGTTCAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAGTAGGAGAAGATTTATGGTAAAATCCATCCATTACTTGGATTCCTTTGCATTAGAACGAGTTTGACTCTGCTTTCGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTTCCAACTTATTCATATTTGAATGAAAATGATGTCAAATGGCCACTTTTTATCATAAATTTATTATGATACTTCGTTGAGATTTGTGTCAATTTACTTTCGATGAGTGTAAACATTGATGATTGAACGCCCAATGATATTGGGGCTAGAGCACATGCCTGATTTGCCACAAGGCAAGACTCCATAACTCAGCAAACAACAAGAATGTGAGTTGGTCACGTTTTAAAAAAAGTTGTCCATGCTATGGTACCAAGATTTTTTTTAGTATAAGATATGGTGATCAACTATTCGCACAAAGTGTCTAGATAATCCGTAGAATTTTAAATTTTAGATAAAATGACGATCATAATTAGAATAAATTGGGTGTAAAACTGAGACAACTTACAATCCATTCTCAATTTCAAGAAAGATGGGGTTTTGAACAAATGTAATTTGATAAAGTATTTACTTAAATCCAAGAGCAAACTTGAACAATTGGAACTTATGAAATTTCCTCAAATTACAGAAATTGGACTTGAAGTAGATCAAAGTTACTTCTGATAGCCATTGACAGACACCAATTCTGCAGCATTAGATCATTGGGAGTGGAATTAAAATATAATTCAGTTCATAGATCTGAAGATAAGAATAAACAAAATGGCTTCAAACTAGTAACTAAAGATCAAAAGAAAATAAATAATGCTCATCATTTGGGCAGTAAAAATGGAACAGTTAGCTGTCTGAAACAATGTTTCAAGAAATGGCTTCCTCACCAGCATTGGCAAAAACCCATCAAAGCACAACCAATCCAAATGAACATCAGTCAAAGAGTCGGTAGAACAAAACATAAAGAGCTTTGAATCCTTTGTACAAACCAAAGGCCAAACCCTAAAGAAACAGAGTAAATGCCACAAAGCACCAAAGTCATTGTGATTGTTTCTTACAGAAACACTTCACGGCTTGTTGGCAGTTGGCCTGAGACCTGGTAAATGTAAATCACACATCGCAGATTCCAATCCTTTTCAGTAGAAAAGATGGTTTCTAATATGCATTACAATTGTTTTCTAAATCACTTAAGAAGAGGTGTTTGACTTCATGAGTGAAGTTTGTGTAGCTCAGGATTATGGAGTTAGAATTTATGCCCGTACTTCAAACTGAAACTCGCCATTTATACTACATACAATCTTTTACAGATCGTAATTCTAGAACCATATGAAAGCCATTCAATCCCAAACTTCAGTGTATTTCGTTTCTTTGGACAATTTAAACACACTAAACAGATTCGAAGTCCTCATGCTTGAGTTAACTATAACTGTGAGCAAAACTATTTCCTAGACGTCTCATATCTAAAATGAACGGAAATTTTTACAATGCTCACTGCTGTGCAGCCGCATCGAACTTGCTAAATAAAAATGAATTAGAAGAGATAAGAAAAAGAAAATGACATCTTAAAGAGACTACAGGTTAGAGAATGTTGCAGCCGAGGGGTACAGAGAAGGGTTCTGCTAGACTAAGCAAAATAAATGGATCGGCACTGAAGCTTGTTGCATTATAAAATTGGGTACACCATTACATAATATGTTACTTCTACAGATGCACATTGACTGATAGATGGTTAATTTAAAAGGCACTACTGACAATGCAGACGCCAGAAACCTAATATTCACAAAAATTTCCAAGGAGCATTTGCTCTCAGAAAGGATTTCTACCCTCTTAATCGTTATTAATGTCAATACATGCACTAATCTATCAACTCCAAAAGGAATGAGACCCTCTAATAAAAGGACGGGTGACTTGAAGAACCTCAAGATAACGGAAAAATAGAGAATTATAAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

mRNA sequence

ATGAACAGAGGAGGAGTAGAATCAGAGGATTTTTGTAATTTTGTTTTTGAAATTTTCTTTGTTGTGATTTCTTCAAATCCTGCTGATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

Coding sequence (CDS)

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

Protein sequence

MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGGGERKDKTLYTYLYICLYLPKTRPVVIYINHKGEISSFPSSLLPQEKREGKGKGHRLNCTRDGSHE

Homology

[Close]

BLAST of CmaCh17G012590.1 vs. TrEMBL
Match: K7MG85_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-19
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GGGERK 76
           GGG +K
Sbjct: 108 GGGGKK 113

[Close]

BLAST of CmaCh17G012590.1 vs. TrEMBL
Match: K7MG84_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12  RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
           RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 65  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 124

Query: 72  GERK 76
           G +K
Sbjct: 125 GGKK 128

[Close]

BLAST of CmaCh17G012590.1 vs. TrEMBL
Match: A0A0R0G092_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 3  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 62

Query: 72 GERK 76
          G +K
Sbjct: 63 GGKK 66

[Close]

BLAST of CmaCh17G012590.1 vs. TrEMBL
Match: A0A151R150_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042653 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 10 SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
          SERGNQRDRDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEK A+KAA  AGG NA
Sbjct: 1  SERGNQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNA 60

Query: 70 GGGERK 76
          GGG  K
Sbjct: 61 GGGGGK 66

[Close]

BLAST of CmaCh17G012590.1 vs. TrEMBL
Match: A0A0B2R3P1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047978 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 3   DDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAM 62
           +  ++   +RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA 
Sbjct: 58  NQLKKMTHQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQ 117

Query: 63  AAGGINAGGGERK 76
           AAGG NAGGG +K
Sbjct: 118 AAGGNNAGGGGKK 130

[Close]

BLAST of CmaCh17G012590.1 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RG+QR+RDRERA AR G K K  ++DG TPEQRRERDAKALQEKTA+KAA AA   ++GG
Sbjct: 3  RGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGG 62

Query: 72 GERK 76
          G  K
Sbjct: 63 GGGK 65

[Close]

BLAST of CmaCh17G012590.1 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RG+QR+RDRERA ARAG K K   +DG TPEQRRERD KALQEK A+KAA AAG  + G 
Sbjct: 3  RGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGGA 62

Query: 72 GERK 76
             K
Sbjct: 63 AGGK 65

[Close]

BLAST of CmaCh17G012590.1 vs. NCBI nr
Match: gi|947058149|gb|KRH07555.1| (hypothetical protein GLYMA_16G094600, partial [Glycine max])

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-19
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GGGERK 76
           GGG +K
Sbjct: 108 GGGGKK 113

[Close]

BLAST of CmaCh17G012590.1 vs. NCBI nr
Match: gi|571527066|ref|XP_006599192.1| (PREDICTED: putative SERF-like protein [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 3  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 62

Query: 72 GERK 76
          G +K
Sbjct: 63 GGKK 66

[Close]

BLAST of CmaCh17G012590.1 vs. NCBI nr
Match: gi|1012324216|gb|KYP36243.1| (hypothetical protein KK1_042653, partial [Cajanus cajan])

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-18
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 10 SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
          SERGNQRDRDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEK A+KAA  AGG NA
Sbjct: 1  SERGNQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNA 60

Query: 70 GGGERK 76
          GGG  K
Sbjct: 61 GGGGGK 66

[Close]

BLAST of CmaCh17G012590.1 vs. NCBI nr
Match: gi|734390116|gb|KHN26512.1| (hypothetical protein glysoja_047978, partial [Glycine soja])

HSP 1 Score: 99.0 bits (245), Expect = 6.8e-18
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 3   DDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAM 62
           +  ++   +RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA 
Sbjct: 58  NQLKKMTHQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQ 117

Query: 63  AAGGINAGGGERK 76
           AAGG NAGGG +K
Sbjct: 118 AAGGNNAGGGGKK 130

[Close]

BLAST of CmaCh17G012590.1 vs. NCBI nr
Match: gi|965611011|dbj|BAT97150.1| (hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis])

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQRDRDRERAQARAG KTKQPRNDG TPEQRRERDAKALQEK A+KAA AAGG NAG 
Sbjct: 3  RGNQRDRDRERAQARAGGKTKQPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAGV 62

Query: 72 G 73
          G
Sbjct: 63 G 63

The following BLAST results are available for this feature:

BLAST of CmaCh17G012590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
K7MG85_SOYBN	5.6e-19	84.85	Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1	[more]
K7MG84_SOYBN	2.1e-18	85.94	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0G092_SOYBN	2.1e-18	85.94	Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1	[more]
A0A151R150_CAJCA	2.8e-18	84.85	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042653 PE=4 SV=1	[more]
A0A0B2R3P1_GLYSO	4.8e-18	75.34	Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047978 PE=4 SV=1	[more]

BLAST of CmaCh17G012590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	3.2e-13	68.75	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.7e-11	65.63	Uncharacterised protein family SERF	[more]

BLAST of CmaCh17G012590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|947058149\|gb\|KRH07555.1\|	8.1e-19	84.85	hypothetical protein GLYMA_16G094600, partial [Glycine max]	[more]
gi\|571527066\|ref\|XP_006599192.1\|	3.1e-18	85.94	PREDICTED: putative SERF-like protein [Glycine max]	[more]
gi\|1012324216\|gb\|KYP36243.1\|	4.0e-18	84.85	hypothetical protein KK1_042653, partial [Cajanus cajan]	[more]
gi\|734390116\|gb\|KHN26512.1\|	6.8e-18	75.34	hypothetical protein glysoja_047978, partial [Glycine soja]	[more]
gi\|965611011\|dbj\|BAT97150.1\|	7.6e-17	88.52	hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G012590	CmaCh17G012590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012590.1	CmaCh17G012590.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012590.1.CDS.4	CmaCh17G012590.1.CDS.4	CDS
CmaCh17G012590.1.CDS.3	CmaCh17G012590.1.CDS.3	CDS
CmaCh17G012590.1.CDS.2	CmaCh17G012590.1.CDS.2	CDS
CmaCh17G012590.1.CDS.1	CmaCh17G012590.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012590.1.five_prime_UTR.1	CmaCh17G012590.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012590.1.exon.4	CmaCh17G012590.1.exon.4	exon
CmaCh17G012590.1.exon.3	CmaCh17G012590.1.exon.3	exon
CmaCh17G012590.1.exon.2	CmaCh17G012590.1.exon.2	exon
CmaCh17G012590.1.exon.1	CmaCh17G012590.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 12..45 score: 1.
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 11..103 score: 6.8
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 11..103 score: 6.8