CmaCh17G011490.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCAAAAGGAGCCCAATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGGTGAACACTTTGCCCTTTGTTAGTTTTCTGTGTGAAAAATATTCCAATGGAAGCGTATGAATGGATGTACAATATCGGTTCAACCTGTTCTTAGAGCTTCGATGCAAGTTCTAGTATCATCTTTCTAAAAATTTCTTGTATGGTGTGTGAATTGTTATTTCTTTTTCTCTAATCGGTTGTGTGTGATTCTCTGAAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTAGGTTTTATTTCTTGTATTTCTTATTACGGTCTCTGAAAACTAAGAAATATTGGAAAATGAGGAAAAATGACGGAACAGGTGCTGTATCTTAACTTGATTTCCATCAGAATAGTGAATAACCAGGAATTGGAATTCGAACTACGTGGTTAATGTATTATAGCTATTATATGGTCGCAACTTAAATCAAGCAACATCTGTATGGTGTACTCTCTGTGCAAACAGTTCTGATATCTCTGTTCGACTGTGATCAGGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGTATGTGATCTATCATTTCGTCTGGCTGTGTCAAGTATAGGATTTTGGATTATGAATAGTTTCAACTGTTCTTTCCTTTTGAACTCTTCTAATTCTTCTTAGGTTTCCATTCCATTGAAATAAGTTTTAACTGATTCTGATGCTCTATATTCCTGAATATTGTTTCCATGTAAATGCTGCAATAAAATTAGGTCCGCTTACTGGTTCAACCTGATTTATGAAACTGAAGTATTAACTCTAAGTACTTTTGGAACGGAGACAAAAGCATCTAAAGAAAGTTACCAGTTATTGGTAATGTTAAACTTTATGACTTCATTGGAATCTTCTGTGTTGAAGCTTTTTGCTGGCAAATATTAGCGCTTCCTTTAGTAGTGAGCCGAGTATCTTTGACAAGAGAAAAACATATGCCATAGCTTTTAGGTAGTCAGGTTATTGTACATTTGAATCATTTGCTTGGATTATTTAGGTGGAAAAAGACCACCTTTGTGTTTTCTTCATCTTCCTGTGTTATCTTAGTTCATTTGGTTGTAAACTGGGTGACTGCAGTTACTGGAATCACCAATATATAACTATCGCTAGCGCAATTTCGTATGCCGATATCATAAGAAATATTTTGACAAGGCAGCCTTAACTCTTAGTGCCATCAATGTCTCATGGAGCTTATTGCGCAAAGACTGGATAAATTGCAAATATATGTTTTTTCTTTCTTTCGGCAATTCTAAGACTTGAGCTTGCTCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAATTCTTTTTAGAATTGGTTGATTGAAGGTTTCCTTAGTGATGCGACCATCACTATTTAGGCAAAACAGATATGCAATCTATGAGCTCTTGTCCATGTTCATGCTGAATTATCTTCATTGTTTTGATTTACGAGGCTATCCTTGTGTTTCTTCCTTTACTCTTCTAGATCATCAGTTTCCTCTTGCTTCTGTTAGTTGACTACCATAAGTTGTGAGGTTATTCTTTTATAGTTGTGATTATGTAATGCTCTTGATTCATGTACAACGCTTTTATATCCAAGCGTCGCTGCGGTGTCATGCATATTGCTTTCAACTCATTTACTTTAGTGCTCTTACATCTATAATACCACGGTTCTACTCGATTCATGATGATAAATGCAACTTGTTTTATTCCTGGGGAAACCTTTTTCATTTGATTCATAAGACAATTTTCGGATATCATGGTATATCGAATAAATGCTGAATTATCATCACTTGGTTACTATATCAGGCCATCGGCGTATTTCTTACTCTAGAATACTGCATCTCTTTTTTTTTCTCATTGTTGTTTTAGACAGTCTATCTGATCCATGTCATTAATTATTCCAGATTCTAAGCTCAAAAGAGAGGTTTAAATTCTGGTTACTTGAATTGTCCCCTTTCCTTTTAGGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAAGTGAGAATTGGCTGCCAACACTCTTCAGTTCTCTTTTTCAACAATTAAACCCTTCTAACTTTCAAGTTCTGCAGTGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGGTATGTCTTCTATTCAAACTTTTACATCATATAAGAGATTAAAGGCTCCAAGCTTTGACACTTAGAATCGATTAAATACCATGTGATCTCTGTACTTTAGATTATATTCTATTTTAGTCCTTGTACTTTTGATTGTCCAAATTTAGGCTTTATATTTAAGATTTATTGATTGATGGATTAAAATAGAATAAAACTCAAAGTACAGAGTTTAAACTCGAACATAGTTTAGTACAATGAGGTGATTTACTCGTTTGCTGAAAGGAAATCTCTCCCATTTGCCAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCATATAAGCCTCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACGTAGAGGATTGAGTTATAAAATGCTAAATTAATGGGAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATTTTGATTTCGAACCAACAATAGCAATCCTTCATATCATCTTGAACTTTTGAATATAACAACTTTTCATTA TTCCAAAAGGAGCCCAATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCATATAAGCCTCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACGTAGAGGATTGAGTTATAAAATGCTAAATTAATGGGAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATTTTGATTTCGAACCAACAATAGCAATCCTTCATATCATCTTGAACTTTTGAATATAACAACTTTTCATTA ATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA MVKLSPKPIVYATSGGPVRNRTIGGDLSKRSPRRRRSLSHSQFRMQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
BLAST of CmaCh17G011490.1 vs. Swiss-Prot
Match: RM46_MOUSE (39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.1e-14 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. Swiss-Prot
Match: RM46_HUMAN (39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14 Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. Swiss-Prot
Match: RM46_PONAB (39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14 Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. Swiss-Prot
Match: RM46_RAT (39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.4e-14 Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. Swiss-Prot
Match: RM17_YEAST (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1 SV=2) HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13 Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TrEMBL
Match: A0A0A0KAL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391280 PE=4 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 1.1e-114 Identity = 214/277 (77.26%), Postives = 238/277 (85.92%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TrEMBL
Match: A0A067HEE2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.8e-102 Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TrEMBL
Match: V4TD07_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.8e-102 Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TrEMBL
Match: A0A067H5Y8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102 Identity = 187/231 (80.95%), Postives = 202/231 (87.45%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TrEMBL
Match: V4U2D8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102 Identity = 187/231 (80.95%), Postives = 202/231 (87.45%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. TAIR10
Match: AT1G14620.1 (AT1G14620.1 decoy) HSP 1 Score: 339.0 bits (868), Expect = 2.8e-93 Identity = 161/220 (73.18%), Postives = 185/220 (84.09%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. NCBI nr
Match: gi|659101069|ref|XP_008451408.1| (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis melo]) HSP 1 Score: 434.5 bits (1116), Expect = 1.4e-118 Identity = 209/232 (90.09%), Postives = 224/232 (96.55%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. NCBI nr
Match: gi|659101071|ref|XP_008451409.1| (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo]) HSP 1 Score: 430.3 bits (1105), Expect = 2.6e-117 Identity = 207/229 (90.39%), Postives = 221/229 (96.51%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. NCBI nr
Match: gi|778727817|ref|XP_011659323.1| (PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 421.0 bits (1081), Expect = 1.6e-114 Identity = 202/232 (87.07%), Postives = 220/232 (94.83%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. NCBI nr
Match: gi|700189618|gb|KGN44851.1| (hypothetical protein Csa_7G391280 [Cucumis sativus]) HSP 1 Score: 421.0 bits (1081), Expect = 1.6e-114 Identity = 214/277 (77.26%), Postives = 238/277 (85.92%), Query Frame = 1
BLAST of CmaCh17G011490.1 vs. NCBI nr
Match: gi|449462292|ref|XP_004148875.1| (PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus]) HSP 1 Score: 416.8 bits (1070), Expect = 3.0e-113 Identity = 200/229 (87.34%), Postives = 217/229 (94.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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