CmaCh17G011490 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G011490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description39S ribosomal protein L46, mitochondrial
LocationCma_Chr17 : 7989970 .. 7993347 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAAAAGGAGCCCAATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGGTGAACACTTTGCCCTTTGTTAGTTTTCTGTGTGAAAAATATTCCAATGGAAGCGTATGAATGGATGTACAATATCGGTTCAACCTGTTCTTAGAGCTTCGATGCAAGTTCTAGTATCATCTTTCTAAAAATTTCTTGTATGGTGTGTGAATTGTTATTTCTTTTTCTCTAATCGGTTGTGTGTGATTCTCTGAAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTAGGTTTTATTTCTTGTATTTCTTATTACGGTCTCTGAAAACTAAGAAATATTGGAAAATGAGGAAAAATGACGGAACAGGTGCTGTATCTTAACTTGATTTCCATCAGAATAGTGAATAACCAGGAATTGGAATTCGAACTACGTGGTTAATGTATTATAGCTATTATATGGTCGCAACTTAAATCAAGCAACATCTGTATGGTGTACTCTCTGTGCAAACAGTTCTGATATCTCTGTTCGACTGTGATCAGGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGTATGTGATCTATCATTTCGTCTGGCTGTGTCAAGTATAGGATTTTGGATTATGAATAGTTTCAACTGTTCTTTCCTTTTGAACTCTTCTAATTCTTCTTAGGTTTCCATTCCATTGAAATAAGTTTTAACTGATTCTGATGCTCTATATTCCTGAATATTGTTTCCATGTAAATGCTGCAATAAAATTAGGTCCGCTTACTGGTTCAACCTGATTTATGAAACTGAAGTATTAACTCTAAGTACTTTTGGAACGGAGACAAAAGCATCTAAAGAAAGTTACCAGTTATTGGTAATGTTAAACTTTATGACTTCATTGGAATCTTCTGTGTTGAAGCTTTTTGCTGGCAAATATTAGCGCTTCCTTTAGTAGTGAGCCGAGTATCTTTGACAAGAGAAAAACATATGCCATAGCTTTTAGGTAGTCAGGTTATTGTACATTTGAATCATTTGCTTGGATTATTTAGGTGGAAAAAGACCACCTTTGTGTTTTCTTCATCTTCCTGTGTTATCTTAGTTCATTTGGTTGTAAACTGGGTGACTGCAGTTACTGGAATCACCAATATATAACTATCGCTAGCGCAATTTCGTATGCCGATATCATAAGAAATATTTTGACAAGGCAGCCTTAACTCTTAGTGCCATCAATGTCTCATGGAGCTTATTGCGCAAAGACTGGATAAATTGCAAATATATGTTTTTTCTTTCTTTCGGCAATTCTAAGACTTGAGCTTGCTCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAATTCTTTTTAGAATTGGTTGATTGAAGGTTTCCTTAGTGATGCGACCATCACTATTTAGGCAAAACAGATATGCAATCTATGAGCTCTTGTCCATGTTCATGCTGAATTATCTTCATTGTTTTGATTTACGAGGCTATCCTTGTGTTTCTTCCTTTACTCTTCTAGATCATCAGTTTCCTCTTGCTTCTGTTAGTTGACTACCATAAGTTGTGAGGTTATTCTTTTATAGTTGTGATTATGTAATGCTCTTGATTCATGTACAACGCTTTTATATCCAAGCGTCGCTGCGGTGTCATGCATATTGCTTTCAACTCATTTACTTTAGTGCTCTTACATCTATAATACCACGGTTCTACTCGATTCATGATGATAAATGCAACTTGTTTTATTCCTGGGGAAACCTTTTTCATTTGATTCATAAGACAATTTTCGGATATCATGGTATATCGAATAAATGCTGAATTATCATCACTTGGTTACTATATCAGGCCATCGGCGTATTTCTTACTCTAGAATACTGCATCTCTTTTTTTTTCTCATTGTTGTTTTAGACAGTCTATCTGATCCATGTCATTAATTATTCCAGATTCTAAGCTCAAAAGAGAGGTTTAAATTCTGGTTACTTGAATTGTCCCCTTTCCTTTTAGGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAAGTGAGAATTGGCTGCCAACACTCTTCAGTTCTCTTTTTCAACAATTAAACCCTTCTAACTTTCAAGTTCTGCAGTGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGGTATGTCTTCTATTCAAACTTTTACATCATATAAGAGATTAAAGGCTCCAAGCTTTGACACTTAGAATCGATTAAATACCATGTGATCTCTGTACTTTAGATTATATTCTATTTTAGTCCTTGTACTTTTGATTGTCCAAATTTAGGCTTTATATTTAAGATTTATTGATTGATGGATTAAAATAGAATAAAACTCAAAGTACAGAGTTTAAACTCGAACATAGTTTAGTACAATGAGGTGATTTACTCGTTTGCTGAAAGGAAATCTCTCCCATTTGCCAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCATATAAGCCTCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACGTAGAGGATTGAGTTATAAAATGCTAAATTAATGGGAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATTTTGATTTCGAACCAACAATAGCAATCCTTCATATCATCTTGAACTTTTGAATATAACAACTTTTCATTA

mRNA sequence

TTCCAAAAGGAGCCCAATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCATATAAGCCTCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACGTAGAGGATTGAGTTATAAAATGCTAAATTAATGGGAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATTTTGATTTCGAACCAACAATAGCAATCCTTCATATCATCTTGAACTTTTGAATATAACAACTTTTCATTA

Coding sequence (CDS)

ATGGTTAAACTCAGCCCAAAGCCTATAGTATACGCAACCTCCGGCGGCCCAGTCAGAAACAGAACAATAGGAGGAGATTTATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTACGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAACAATATCGGCGCCGATATCCTGATGAATTTTTAGATAAAGCTAATGCCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTCACTGCAGAGAGCACTCGACAGAAGACTCTACCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAACCTATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCTGTTCTTGGAGGTCTTTCTCATACATATTTTGTCGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAACATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA

Protein sequence

MVKLSPKPIVYATSGGPVRNRTIGGDLSKRSPRRRRSLSHSQFRMQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
BLAST of CmaCh17G011490 vs. Swiss-Prot
Match: RM46_MOUSE (39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-14
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1

Query: 124 IDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETL 183
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-VLLVREKLGDQD---VWMLPQVEWQPGETL 186

Query: 184 RKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS---LKRFFFKSQVIATNKF 243
           R  AE  L ++        F+GNAP  H      +  Q  S   +K FFFK+ ++  +  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFV 246

Query: 244 NIGKCEDFVWVTKDELMEY 260
             GK    VW +K+EL +Y
Sbjct: 247 QAGKKSRHVWASKEELGDY 261

BLAST of CmaCh17G011490 vs. Swiss-Prot
Match: RM46_HUMAN (39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 1

Query: 131 RITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETLRKCAESA 190
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQAEWQPGETLRGTAERT 195

Query: 191 LESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS---LKRFFFKSQVIATNKFNIGKCED 250
           L ++        F+GNAP  H      +  +  S    K FFFK+ ++  +    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 251 FVWVTKDELMEY 260
            VWVTKDEL +Y
Sbjct: 256 HVWVTKDELGDY 263

BLAST of CmaCh17G011490 vs. Swiss-Prot
Match: RM46_PONAB (39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 1

Query: 131 RITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETLRKCAESA 190
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQTEWQPGETLRGTAERT 195

Query: 191 LESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS---LKRFFFKSQVIATNKFNIGKCED 250
           L ++        F+GNAP  H      +  +  S    K FFFK+ ++  +    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 251 FVWVTKDELMEY 260
            VWVTKDEL +Y
Sbjct: 256 HVWVTKDELGDY 263

BLAST of CmaCh17G011490 vs. Swiss-Prot
Match: RM46_RAT (39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-14
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1

Query: 124 IDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETL 183
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-ILLVREKLGDQD---LWMLPQVEWQPGETL 186

Query: 184 RKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS---LKRFFFKSQVIATNKF 243
           R  AE  L ++        F+GNAP  H      +  +  S   +K FFFK+ ++  +  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFV 246

Query: 244 NIGKCEDFVWVTKDELMEY 260
             GK    VW +K+EL +Y
Sbjct: 247 QTGKKGRHVWASKEELGDY 261

BLAST of CmaCh17G011490 vs. Swiss-Prot
Match: RM17_YEAST (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 1

Query: 110 FLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPI 169
           F +    + K D     +P  RITEAD++ND KSL+R L R LYLL+        DK   
Sbjct: 124 FSNNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLV-------KDKSGT 183

Query: 170 WHFPEKAYETE-ETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPSLKRF 229
           W FP      E + L   AE+ L+ + G   +T+ V   P+  +      TA+      F
Sbjct: 184 WKFPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIGVLQDERNRTAE------F 243

Query: 230 FFKSQVIATNKFNI-----GKCEDFVWVTKDELMEYFPDQAEFFKK 270
             KS ++A  KF++        EDF W+TK E+ EY P   ++F K
Sbjct: 244 IVKSHILA-GKFDLVASKNDAFEDFAWLTKGEISEYVP--KDYFNK 273

BLAST of CmaCh17G011490 vs. TrEMBL
Match: A0A0A0KAL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391280 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.1e-114
Identity = 214/277 (77.26%), Postives = 238/277 (85.92%), Query Frame = 1

Query: 1   MVKLSPKPIVYATSGGPVRNRTIGGDLSKRSPRRRRSLS---HSQF-RMQRSFSLASQLA 60
           MV +S KPI Y TS   +R        + R   +  +L+   H+   RMQRS + A QL 
Sbjct: 1   MVMISSKPIEYPTSAAHLRTLR-----TTREGYQSATLAVDGHTVILRMQRSLNFAGQLV 60

Query: 61  KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDEFLDKANA 120
           KRRGFSTNSEKIVA+VLFERLPVVIPKIDPV+YAF +F+FRWQQQYRR+YPDEFL+KA+ 
Sbjct: 61  KRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRRKYPDEFLNKADG 120

Query: 121 RGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKA 180
           RGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SIGAPD+KPIWHFPEKA
Sbjct: 121 RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKA 180

Query: 181 YETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPSLKRFFFKSQVIA 240
           YETEETLRKCAESAL+SVLG LS TYFVGNAPM HMVVPPTETA VP+LKRFFFKSQV+A
Sbjct: 181 YETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRFFFKSQVVA 240

Query: 241 TNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
            +KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 241 ADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

BLAST of CmaCh17G011490 vs. TrEMBL
Match: A0A067HEE2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.8e-102
Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 1

Query: 44  RMQRSF-SLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQY 103
           +M+RS  SL   L   RGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEF FRW+QQY
Sbjct: 10  KMRRSLTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQY 69

Query: 104 RRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIG 163
           RRRYPDEFLDK+N+RGKGDYQ++YVPAPRITE DKTNDRKSLQRALDRRLYL+LYG + G
Sbjct: 70  RRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFG 129

Query: 164 APDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTE-TAQ 223
           AP  KPIWHFPEK YE+EE+LRKCAE AL+SVLG LSHTYFVGNAPM HMV+ P E    
Sbjct: 130 APGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD 189

Query: 224 VPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           VPS K+FFFKSQVIA+NKF IGKCEDFVWVTKDELMEYFP+ AEF  KMIIS
Sbjct: 190 VPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYFPESAEFLNKMIIS 241

BLAST of CmaCh17G011490 vs. TrEMBL
Match: V4TD07_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.8e-102
Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 1

Query: 44  RMQRSF-SLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQY 103
           +M+RS  SL   L   RGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEF FRW+QQY
Sbjct: 10  KMRRSLTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQY 69

Query: 104 RRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIG 163
           RRRYPDEFLDK+N+RGKGDYQ++YVPAPRITE DKTNDRKSLQRALDRRLYL+LYG + G
Sbjct: 70  RRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFG 129

Query: 164 APDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTE-TAQ 223
           AP  KPIWHFPEK YE+EE+LRKCAE AL+SVLG LSHTYFVGNAPM HMV+ P E    
Sbjct: 130 APGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD 189

Query: 224 VPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           VPS K+FFFKSQVIA+NKF IGKCEDFVWVTKDELMEYFP+ AEF  KMIIS
Sbjct: 190 VPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYFPESAEFLNKMIIS 241

BLAST of CmaCh17G011490 vs. TrEMBL
Match: A0A067H5Y8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102
Identity = 187/231 (80.95%), Postives = 202/231 (87.45%), Query Frame = 1

Query: 45  MQRSF-SLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYR 104
           M+RS  SL   L   RGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEF FRW+QQYR
Sbjct: 1   MRRSLTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYR 60

Query: 105 RRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGA 164
           RRYPDEFLDK+N+RGKGDYQ++YVPAPRITE DKTNDRKSLQRALDRRLYL+LYG + GA
Sbjct: 61  RRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGA 120

Query: 165 PDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTE-TAQV 224
           P  KPIWHFPEK YE+EE+LRKCAE AL+SVLG LSHTYFVGNAPM HMV+ P E    V
Sbjct: 121 PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDV 180

Query: 225 PSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           PS K+FFFKSQVIA+NKF IGKCEDFVWVTKDELMEYFP+ AEF  KMIIS
Sbjct: 181 PSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYFPESAEFLNKMIIS 231

BLAST of CmaCh17G011490 vs. TrEMBL
Match: V4U2D8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102
Identity = 187/231 (80.95%), Postives = 202/231 (87.45%), Query Frame = 1

Query: 45  MQRSF-SLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYR 104
           M+RS  SL   L   RGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEF FRW+QQYR
Sbjct: 1   MRRSLTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYR 60

Query: 105 RRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGA 164
           RRYPDEFLDK+N+RGKGDYQ++YVPAPRITE DKTNDRKSLQRALDRRLYL+LYG + GA
Sbjct: 61  RRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGA 120

Query: 165 PDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTE-TAQV 224
           P  KPIWHFPEK YE+EE+LRKCAE AL+SVLG LSHTYFVGNAPM HMV+ P E    V
Sbjct: 121 PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDV 180

Query: 225 PSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           PS K+FFFKSQVIA+NKF IGKCEDFVWVTKDELMEYFP+ AEF  KMIIS
Sbjct: 181 PSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYFPESAEFLNKMIIS 231

BLAST of CmaCh17G011490 vs. TAIR10
Match: AT1G14620.1 (AT1G14620.1 decoy)

HSP 1 Score: 339.0 bits (868), Expect = 2.8e-93
Identity = 161/220 (73.18%), Postives = 185/220 (84.09%), Query Frame = 1

Query: 55  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDEFLDKA 114
           L  RRGF T+S+KIVASVLFERL VVIPK DP VYAFQEFKF WQQQ+RRRYPDEFLD A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 115 NARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPE 174
             R KG+YQ+DYVPAPRITEADK NDRKSL RALD++LYLL++G   GA   KP+WHFPE
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPE 133

Query: 175 KAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPT-ETAQVPSLKRFFFKSQ 234
           K Y++E TLRKCAESAL+SV+G L+HTYFVGNAPMAHM + PT E   +PS KRFFFK  
Sbjct: 134 KVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCS 193

Query: 235 VIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           V+A +K++I  CEDFVWVTKDEL+E+FP+QAEFF KMIIS
Sbjct: 194 VVAASKYDISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS 233

BLAST of CmaCh17G011490 vs. NCBI nr
Match: gi|659101069|ref|XP_008451408.1| (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 1.4e-118
Identity = 209/232 (90.09%), Postives = 224/232 (96.55%), Query Frame = 1

Query: 42  QFRMQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQ 101
           Q+RMQRS S ASQL KRRGFSTNSEKIVA+VLFERLP+VIPKIDPVVYAF EF+FRWQQQ
Sbjct: 4   QYRMQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQ 63

Query: 102 YRRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASI 161
           YRR+YPDEFLDKA+ARGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SI
Sbjct: 64  YRRKYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSI 123

Query: 162 GAPDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQ 221
           GAPD+KPIWHFPEK YETEETLRKCAESAL+SVLG LSHTYFVGNAPM HMVVPPTETAQ
Sbjct: 124 GAPDEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQ 183

Query: 222 VPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           VP+LKRFFFKSQV+AT+KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 184 VPTLKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

BLAST of CmaCh17G011490 vs. NCBI nr
Match: gi|659101071|ref|XP_008451409.1| (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.6e-117
Identity = 207/229 (90.39%), Postives = 221/229 (96.51%), Query Frame = 1

Query: 45  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 104
           MQRS S ASQL KRRGFSTNSEKIVA+VLFERLP+VIPKIDPVVYAF EF+FRWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 105 RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAP 164
           +YPDEFLDKA+ARGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 165 DKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS 224
           D+KPIWHFPEK YETEETLRKCAESAL+SVLG LSHTYFVGNAPM HMVVPPTETAQVP+
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 225 LKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           LKRFFFKSQV+AT+KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

BLAST of CmaCh17G011490 vs. NCBI nr
Match: gi|778727817|ref|XP_011659323.1| (PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.6e-114
Identity = 202/232 (87.07%), Postives = 220/232 (94.83%), Query Frame = 1

Query: 42  QFRMQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQ 101
           Q+RMQRS + A QL KRRGFSTNSEKIVA+VLFERLPVVIPKIDPV+YAF +F+FRWQQQ
Sbjct: 4   QYRMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQ 63

Query: 102 YRRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASI 161
           YRR+YPDEFL+KA+ RGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SI
Sbjct: 64  YRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSI 123

Query: 162 GAPDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQ 221
           GAPD+KPIWHFPEKAYETEETLRKCAESAL+SVLG LS TYFVGNAPM HMVVPPTETA 
Sbjct: 124 GAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAP 183

Query: 222 VPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           VP+LKRFFFKSQV+A +KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 184 VPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

BLAST of CmaCh17G011490 vs. NCBI nr
Match: gi|700189618|gb|KGN44851.1| (hypothetical protein Csa_7G391280 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.6e-114
Identity = 214/277 (77.26%), Postives = 238/277 (85.92%), Query Frame = 1

Query: 1   MVKLSPKPIVYATSGGPVRNRTIGGDLSKRSPRRRRSLS---HSQF-RMQRSFSLASQLA 60
           MV +S KPI Y TS   +R        + R   +  +L+   H+   RMQRS + A QL 
Sbjct: 1   MVMISSKPIEYPTSAAHLRTLR-----TTREGYQSATLAVDGHTVILRMQRSLNFAGQLV 60

Query: 61  KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDEFLDKANA 120
           KRRGFSTNSEKIVA+VLFERLPVVIPKIDPV+YAF +F+FRWQQQYRR+YPDEFL+KA+ 
Sbjct: 61  KRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRRKYPDEFLNKADG 120

Query: 121 RGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAPDKKPIWHFPEKA 180
           RGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SIGAPD+KPIWHFPEKA
Sbjct: 121 RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKA 180

Query: 181 YETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPSLKRFFFKSQVIA 240
           YETEETLRKCAESAL+SVLG LS TYFVGNAPM HMVVPPTETA VP+LKRFFFKSQV+A
Sbjct: 181 YETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRFFFKSQVVA 240

Query: 241 TNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
            +KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 241 ADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

BLAST of CmaCh17G011490 vs. NCBI nr
Match: gi|449462292|ref|XP_004148875.1| (PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 3.0e-113
Identity = 200/229 (87.34%), Postives = 217/229 (94.76%), Query Frame = 1

Query: 45  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 104
           MQRS + A QL KRRGFSTNSEKIVA+VLFERLPVVIPKIDPV+YAF +F+FRWQQQYRR
Sbjct: 1   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 60

Query: 105 RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGASIGAP 164
           +YPDEFL+KA+ RGKGDYQIDYVPAPRITEADKTNDRKSL+RALDRRLYLLLYG SIGAP
Sbjct: 61  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 165 DKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAPMAHMVVPPTETAQVPS 224
           D+KPIWHFPEKAYETEETLRKCAESAL+SVLG LS TYFVGNAPM HMVVPPTETA VP+
Sbjct: 121 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 180

Query: 225 LKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 274
           LKRFFFKSQV+A +KF+IGKCEDFVWVTKDEL+E+FPDQAEFFKKMIIS
Sbjct: 181 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RM46_MOUSE1.1e-1436.6939S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1[more]
RM46_HUMAN4.1e-1438.6439S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46 PE=1 SV=1[more]
RM46_PONAB4.1e-1438.6439S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1[more]
RM46_RAT5.4e-1435.9739S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=... [more]
RM17_YEAST2.7e-1333.7354S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
Match NameE-valueIdentityDescription
A0A0A0KAL5_CUCSA1.1e-11477.26Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391280 PE=4 SV=1[more]
A0A067HEE2_CITSI2.8e-10280.60Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1[more]
V4TD07_9ROSI2.8e-10280.60Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1[more]
A0A067H5Y8_CITSI3.7e-10280.95Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026251mg PE=4 SV=1[more]
V4U2D8_9ROSI3.7e-10280.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021940mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G14620.12.8e-9373.18 decoy[more]
Match NameE-valueIdentityDescription
gi|659101069|ref|XP_008451408.1|1.4e-11890.09PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis melo][more]
gi|659101071|ref|XP_008451409.1|2.6e-11790.39PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X2 [Cucumis melo][more]
gi|778727817|ref|XP_011659323.1|1.6e-11487.07PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus][more]
gi|700189618|gb|KGN44851.1|1.6e-11477.26hypothetical protein Csa_7G391280 [Cucumis sativus][more]
gi|449462292|ref|XP_004148875.1|3.0e-11387.34PREDICTED: 39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G011490.1CmaCh17G011490.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR1312439S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATEDcoord: 5..273
score: 1.4

The following gene(s) are paralogous to this gene:

None