CmaCh09G006820.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGGTGTAAACCCGAATGTCGTTACTTTTGGGACTTCGATTTATGGGCTCTCTCTCCATTTTAAGTTGAAAGAAGCATTGAGATTAAGAGAGGATATGGTGAATGTGTATAGATTTCACCTAATGCGTCAATATATGCTACTTTTATCAAAGGATTATGTGGGGTTGGATAATTGAATTTGGCTTTCAAGCTGGAGGAGGAGATGGTGACTAACAAGGTAAAATTAGACTCGGCAATTTATTCTACTTCAATTAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGTTTTTTAAACAGTTTAGTAAGAGGAAATGGCATGAATGTGGCTATATGGTCTAGTTTTGTTTGCAAGGAGAGTCTATCAGAAGCCTCCAAGTTACTTCCTTCATTGATGGGACGATCTTATAATTGCCATGTTTAAATTCTTGTTAGTCCTATTCTATCTACCAATTTAAACTTCTTGTCTCTTATAGGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGTAAGTTGACGTCGACCCATATGAAGTTGTTTTTGAATGGGTTAGAACGAACTTACTATCCATGTTTAGCATGAATGTGATTGTCACATTGGTTGGAGAGGAGAACAAAGCATTCCTTATGAGTGTGGAAACCTCTTTCTAGTAGACGTTTTAAAATCGTGAGGCTGATGGCGATACGTAACAGGCCAAAGCGGACAATATACTAGCAGTAGGCTTGGGCTATTGCAAATGGTATCAGAGCCCGACTCAAAGCGGTGTGCCAGCGAGGACATTGGGCCCCCAAGGGAGGTGGATTGTGAGATCCTACATCGATTGGTGAGGGAAACAAAGCATTCCTTGTATGAGTGTGGAAAGCTCTCCTTAGTAGACGCGTTTTAAAACCGAGAGGCTGATGGTGATACGTAACGGCCAAAGCATACAATATCTACTAGCGGTGAACTTCGACTGTTACAACAAAGAACTAGGGGATAGAGTGATGCACTCTAATGGATCCTAGGTCTCTCTCCATGCTCTATTTTGATCAGGATCTCTTCGATCCAATTGACAATAGACAATTGAGAGTCCCAGCAATAGCCTATTTCTCAAGGAAATAAGAACAAGGGAAGGAGCTATGAAGGGTCCTATTCTATTCAGCTCAGAACCAATTTGTCCAGATACTTGCTTCAGCTTGTGTCCTATCTAGTTGCAGTATATCTGGAACAATTACTGAACACAGGGATCTATCATGTTGAACAACGACATTAAGAGGTACAATTATTTCCATTCAGCACTATAAACTTATACATCTAGCAAGAATCCTTAGTTTATGTGCACAAACATGTAATGAGCATGAGTTACAGAATTTGCAGGCAGGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSESINKLISRWCQECNMELLGQVKLNFHLPGLGIAKHGNIFTFAYFGFNFSAALQRVSYTIQFRKLAATQAE
BLAST of CmaCh09G006820.1 vs. TrEMBL
Match: A0A0A0KZF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622790 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 4.3e-08 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. TrEMBL
Match: A0A0D2W715_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G174100 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. TrEMBL
Match: V5QPJ8_GOSHI (Pentatricopeptide repeat-containing protein OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. TrEMBL
Match: A0A022QQI8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024126mg PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06 Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. NCBI nr
Match: gi|659103014|ref|XP_008452430.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo]) HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. NCBI nr
Match: gi|449456681|ref|XP_004146077.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus]) HSP 1 Score: 75.5 bits (184), Expect = 7.7e-11 Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. NCBI nr
Match: gi|700199862|gb|KGN55020.1| (hypothetical protein Csa_4G622790 [Cucumis sativus]) HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. NCBI nr
Match: gi|747071768|ref|XP_011082772.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Sesamum indicum]) HSP 1 Score: 62.4 bits (150), Expect = 6.8e-07 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1
BLAST of CmaCh09G006820.1 vs. NCBI nr
Match: gi|823265726|ref|XP_012465585.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 isoform X2 [Gossypium raimondii]) HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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