CmaCh09G005980.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G005980.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TRAF-type zinc finger domain-containing 1
Location	Cma_Chr09 : 2799326 .. 2802428 (-)
Sequence length	1175

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCTTTCTCTTTTGGTAAAGGGTGGGTGAGGTCTTCGTTCGTGAAACTCATTCACTTAATTACAAGTAGTTGAATCCAATCTGTCGGTCCTCGTTCTCGAAACGTTATCGATCCACGGCTACAATTTCTTGGTAATTTTCATTCAATCTCAGAGTCTTTCCATTTTATCCTCCTTTTTGATATCCTCAAATTTCTCTGCAGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCAAGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGGTATTGTAATTCTGGATGGATATATAGTTTTTTTTTTTTTCGGCAAGAGATCTCTTGATTGGAAATTTTATCGATTTCAATTTATTTTATTTCTGGCGCTGGCGTTGATTTTTGTTGATGTCTTTGTCAATCGCGGTTATTGTTTGTGATTGTTTCGGAATTTCGATTTATTCCCTTCAATTGTGTTTGAGATTAGATTGTTTTGGGGGATTGAACTCTCATACAATTTAGGCACAAATCTGCCAAGGCCGGATCGTTATTTTGTTTTTTTGATTTGGAAAAAGAACTGTTTGGTAAGAATTTGAATCGCCTGATTATCTTTTCTTCTTCGTGATGAATTTGTTATCTGATCCCTTTCCTAGCAGTTGTTCTTCTATTGTGATGATCTGGATGGTAAATGCTTTTATTTCTCCATTTACAGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTACGATGATTTTTCTTTCAAACTTAGTAAATACCATTGCATTCATATTCTATGGTGCATAAATGAAAGCATAACATTAAGCTTGAGGGTTATTATATTTTCTTTAGATTGCCTTGAGAAGATTCTGCAGCATACAAATTCTCTCTTAAGACTGTTTTGATAAGAATTAGTGGTACTATTAATTATTGGAATTTCAAGTGCTTATGACCTTATGTTTGGACAGGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGTATGACAAATATTGAATTTGTAGTTAAATGAGAATTTCAAAAGCGATCTCCATGTTATATACCTTTGTTGGTTCAAATGTACAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGTATTTCAACTTGCAATTCTTGAAAGTAATCTAATTATTCTATACTGATAACTGCTATCTCTCATTGAGCCCCATAGGATGTCAATTTTTGATGCTATATGCAGTTGGTAGTGCCTAGTTTAAGGTTCTGTATAGTTATCCCATGGCTATGGCTTTCTTCTTGTGGATATCGAAAACCATGGAAATTTTAGATACCCTCTTCCATGAATTTCTTTGCCCTCTCTTTTAATTATCATATATTGATGAATGTTGATCAATTGGTTATTTAATCTGTCTTAGTATTTATTTGTTACTTCTATAAATACATTTTGAAATTAAAAATCTGAACTTTTCAGTCTCAGTCTTCACTCATCAAGGAAAAACCAAACTTTTTCACTACTATAGATGTAACCGCCCGTTTCTTTCTAGGCTTCCCCTCAAGGTTTTAAAACGCATCTATTAGGGAAATGTTTCCATACCCTTATAAGGAATGTATCGTTCCCCTCTCCAACCGATGAGGGATCTCACAATCCACCCCCTTTGGGGACTAGTGTCCTCGCTGAGACACCGGCCGATGTCTGGATTGGATACCATTTGTAACAGCCTAAGCCCACTGCTAGTAGATATTGTCCTATTTGTACTTCCTCTCCTGGGCTTTTTCTCAAGGTTTTTAAAACGTGTCTACTAGGTAAAGGTTTCCACACTCTTATAAGAAATGCTTCGTTCTCCTCTCCAAACGATATGGGATCTCACCATAGCTGAGCTCCATGGATTCAAGTGCTAAAGTCTGAAACTTGCATTGTATTTTAAAACATCTCCCTGGTCTTTTGTAAACTTAAAACTTTGGCAATAAATGAGTCTTGATGGTATTGTACACATGAGTGCCCTGTAATTTGCGCGTTCTTTGTTCTTCCTTCTCAACGGAATGACGAAAATGTGTGTGTGCTGCCATAGGGTTAGCTTCCAATTTATCAGTAGGGTCGATTAGGAATATACCAGATCGAATGAATTTATAGTATGTGGGAATGATGCCTGGTACAACTTGGAACTCAACCCTCAGTTCTTTACTCACGTTCATAACTTTTCTTATTCTATATGTTCAGTTTGTTATCTTCTAATAACGTGCAATCACTCTAAACTGTATCTGAAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCACAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTGGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTCCTTGCGATTTTTTACTTTACTATTTGTTGGTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTAAAGAGATAAATATAATTGTTCCTAAAATTGCTACTTTTTAAATGTCAAGAATTTAGAATCTGCCACTGTCAGAACTTTTTTTTT

mRNA sequence

ATTTTTCTTTCTCTTTTGGTAAAGGGTGGGTGAGGTCTTCGTTCGTGAAACTCATTCACTTAATTACAAGTAGTTGAATCCAATCTGTCGGTCCTCGTTCTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCAAGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCACAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTGGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTCCTTGCGATTTTTTACTTTACTATTTGTTGGTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTAAAGAGATAAATATAATTGTTCCTAAAATTGCTACTTTTTAAATGTCAAGAATTTAGAATCTGCCACTGTCAGAACTTTTTTTTT

Coding sequence (CDS)

ATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGA

Protein sequence

MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQRKAESNIMH

Homology

[Close]

BLAST of CmaCh09G005980.1 vs. Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.4e-24
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ T +C++C ++IP  N  +H +HC RN+  C IC +  PK   E H    H  V+C  
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 126

Query: 126 RERYSHENNC 136
           ++  +H   C
Sbjct: 127 KDLKTHPEVC 135

[Close]

BLAST of CmaCh09G005980.1 vs. Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ T +C++C ++IP  N  +H +HC RN+  C  C +  PK   E H    H  V+C  
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 126

Query: 126 RERYSHENNC 136
           ++  +H   C
Sbjct: 127 KDLKTHPEVC 135

[Close]

BLAST of CmaCh09G005980.1 vs. Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-23
Identity = 43/131 (32.82%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 5   SEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCS 64
           +++ T +C++C ++IP  N  +H +HC RN+  C +C +  PK   E H    H  V+C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTCK 65

Query: 65  LCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIR 124
            C++ +E+  L  H+   CP R+  C+ C+  L  + L +H++ CG RTELC  C R + 
Sbjct: 66  -CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVL 125

Query: 125 LRERYSHENNC 136
           +++  +H   C
Sbjct: 126 VKDLKTHPEVC 135

[Close]

BLAST of CmaCh09G005980.1 vs. Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1


Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++   +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 126

Query: 126 RERYSHENNCKGVAAADTVAESSRDVGAAP 156
           +E  +H       A    V E  R   A P
Sbjct: 127 KELQTHP------AVCGRVEEEKRSEAAVP 149

[Close]

BLAST of CmaCh09G005980.1 vs. Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 1


Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ + +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 126

Query: 126 RERYSHENNCKGVAAADTVAESSRDVGAAP 156
           +E  +H   C        V E  R   A P
Sbjct: 127 KELKTHPEVC------GRVEEEKRTEAAIP 149

[Close]

BLAST of CmaCh09G005980.1 vs. TrEMBL
Match: A0A0A0LHP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]

BLAST of CmaCh09G005980.1 vs. TrEMBL
Match: A0A061FF34_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]

BLAST of CmaCh09G005980.1 vs. TrEMBL
Match: A0A061FEN2_THECC (TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]

BLAST of CmaCh09G005980.1 vs. TrEMBL
Match: B9GN75_POPTR (TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_0002s11050g PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.6e-88
Identity = 156/206 (75.73%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEE+TSIC+HC R IPS+NIDLH  HC RNL+KCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILA+HKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCH+C 
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           +YIRLRERY+HE+ C G+   DT  ESSRDV AA  R   + +G +RRQPQ+FS +RL+F
Sbjct: 121 KYIRLRERYNHESRCTGL--PDTTVESSRDVRAAERR---QPQGPQRRQPQDFSRKRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS  FQ+K E + +H
Sbjct: 181 TIAITGIAVLLGSFLFQKKTEDSQVH 201

[Close]

BLAST of CmaCh09G005980.1 vs. TrEMBL
Match: B9SMY2_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0482610 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-86
Identity = 153/206 (74.27%), Postives = 176/206 (85.44%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETT++CNHC R IPS N DLHSVHC+RNLEKCK+CGDM+PK+H +EH+ NTHAP
Sbjct: 1   MAVASEETTTMCNHCNRAIPSLNYDLHSVHCSRNLEKCKVCGDMIPKKHYDEHFSNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER++LAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREVLAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE  C GV   + +  +SRDV AA      R +GA RR PQ++S RRL+F
Sbjct: 121 RYIRLRERYNHEIRCTGV--TNNIVGTSRDVRAAE-----RPQGAPRRPPQDYSRRRLMF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAV+LGSL FQRK E+N +H
Sbjct: 181 TIAITGIAVILGSLLFQRKTENNPVH 199

[Close]

BLAST of CmaCh09G005980.1 vs. TAIR10
Match: AT1G09920.1 (AT1G09920.1 TRAF-type zinc finger-related)

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-79
Identity = 139/201 (69.15%), Postives = 155/201 (77.11%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           M  A+ E T +CNHC RDIPS NIDLH VHCARNLEKCKICGDMVPK+HAEEHYLNTHAP
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           ++CS+C ET+ER+I   HKGE CP+RIVTCEFCEFPLPAVDLAEHQEVCGNRTELC+ C 
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
            Y+RLRERY+HE  C G        ESSR +  A E D     G RRR     S +RL F
Sbjct: 121 SYVRLRERYNHETKCPG------TVESSRRIPRAAEGD---GNGRRRRDGNGVSNKRLFF 180

Query: 181 TIAITGIAVLLGSLFFQRKAE 202
           TIAITGIAV++GSLFFQRK E
Sbjct: 181 TIAITGIAVIIGSLFFQRKPE 192

[Close]

BLAST of CmaCh09G005980.1 vs. TAIR10
Match: AT4G15420.1 (AT4G15420.1 Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 1


Query: 4   ASEETTSICNHCGRDIPSANIDLHSVHCAR--------------------NLEKCKICGD 63
           +S+  T  C +C   IPS +I LH V+C+R                    N   C+ CG 
Sbjct: 395 SSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGK 454

Query: 64  MVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFC----EFPLPA 123
            +     E+H    H P++C  C   +E++ +  H+G++CP R++ C FC    E    A
Sbjct: 455 ALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSA 514

Query: 124 VD-------LAEHQEVCGNRTELCHLCRRYIRLRERYSHE 133
            D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct: 515 ADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

[Close]

BLAST of CmaCh09G005980.1 vs. NCBI nr
Match: gi|659132315|ref|XP_008466135.1| (PREDICTED: XIAP-associated factor 1 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 2.8e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

[Close]

BLAST of CmaCh09G005980.1 vs. NCBI nr
Match: gi|449436936|ref|XP_004136248.1| (PREDICTED: XIAP-associated factor 1 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]

BLAST of CmaCh09G005980.1 vs. NCBI nr
Match: gi|590596282|ref|XP_007018294.1| (TRAF-type zinc finger-related isoform 2 [Theobroma cacao])

HSP 1 Score: 334.0 bits (855), Expect = 1.9e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]

BLAST of CmaCh09G005980.1 vs. NCBI nr
Match: gi|590596278|ref|XP_007018293.1| (TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 334.0 bits (855), Expect = 1.9e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]

BLAST of CmaCh09G005980.1 vs. NCBI nr
Match: gi|743802897|ref|XP_011016985.1| (PREDICTED: XIAP-associated factor 1 [Populus euphratica])

HSP 1 Score: 332.8 bits (852), Expect = 4.3e-88
Identity = 158/206 (76.70%), Postives = 178/206 (86.41%), Query Frame = 1


Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEE+TSIC+HC R IPS+NIDLH  HC RNL+KCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILA+HKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCH+C 
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C G+   DT  ESSRDV AA  R   +  G +RRQPQEFS +RL+F
Sbjct: 121 RYIRLRERYNHESRCTGL--PDTTVESSRDVRAAERR---QPPGPQRRQPQEFSRKRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS  FQ+K E + +H
Sbjct: 181 TIAITGIAVLLGSFLFQKKTEDSQVH 201

The following BLAST results are available for this feature:

BLAST of CmaCh09G005980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRAD1_MACFA	7.4e-24	34.62	TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAF...	[more]
TRAD1_HUMAN	2.8e-23	33.85	TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1...	[more]
TRAD1_BOVIN	6.3e-23	32.82	TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 S...	[more]
TRAD1_RAT	1.1e-22	32.67	TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1...	[more]
TRAD1_MOUSE	1.4e-22	32.67	TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1...	[more]

BLAST of CmaCh09G005980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHP4_CUCSA	1.7e-107	91.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1	[more]
A0A061FF34_THECC	1.3e-88	76.70	TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao G...	[more]
A0A061FEN2_THECC	1.3e-88	76.70	TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV...	[more]
B9GN75_POPTR	6.6e-88	75.73	TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_000...	[more]
B9SMY2_RICCO	2.1e-86	74.27	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0482610 PE=4 ...	[more]

BLAST of CmaCh09G005980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09920.1	6.6e-79	69.15	TRAF-type zinc finger-related	[more]
AT4G15420.1	3.5e-16	28.75	Ubiquitin fusion degradation UFD1 family protein	[more]

BLAST of CmaCh09G005980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132315\|ref\|XP_008466135.1\|	2.8e-108	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis melo]	[more]
gi\|449436936\|ref\|XP_004136248.1\|	2.4e-107	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis sativus]	[more]
gi\|590596282\|ref\|XP_007018294.1\|	1.9e-88	76.70	TRAF-type zinc finger-related isoform 2 [Theobroma cacao]	[more]
gi\|590596278\|ref\|XP_007018293.1\|	1.9e-88	76.70	TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao]	[more]
gi\|743802897\|ref\|XP_011016985.1\|	4.3e-88	76.70	PREDICTED: XIAP-associated factor 1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G005980	CmaCh09G005980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005980.1	CmaCh09G005980.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005980.1.three_prime_UTR.1	CmaCh09G005980.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005980.1.CDS.5	CmaCh09G005980.1.CDS.5	CDS
CmaCh09G005980.1.CDS.4	CmaCh09G005980.1.CDS.4	CDS
CmaCh09G005980.1.CDS.3	CmaCh09G005980.1.CDS.3	CDS
CmaCh09G005980.1.CDS.2	CmaCh09G005980.1.CDS.2	CDS
CmaCh09G005980.1.CDS.1	CmaCh09G005980.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005980.1.five_prime_UTR.2	CmaCh09G005980.1.five_prime_UTR.2	five_prime_UTR
CmaCh09G005980.1.five_prime_UTR.1	CmaCh09G005980.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005980.1.exon.6	CmaCh09G005980.1.exon.6	exon
CmaCh09G005980.1.exon.5	CmaCh09G005980.1.exon.5	exon
CmaCh09G005980.1.exon.4	CmaCh09G005980.1.exon.4	exon
CmaCh09G005980.1.exon.3	CmaCh09G005980.1.exon.3	exon
CmaCh09G005980.1.exon.2	CmaCh09G005980.1.exon.2	exon
CmaCh09G005980.1.exon.1	CmaCh09G005980.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16295	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	coord: 1..204 score: 7.4E