CmaCh06G005610.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCCGTTAAAAATGTCCCCTCTCCACCCTAGCCGCCGATCCGAGCTTTTGCCCTCCTGGTTTTCATTTGCTCGTCTCCCTTCCAAGTAAGTTTCTTCTTAATCACTCTCCAATCTACTTCTTCGTCTCCTTATCTCCGCCATAAATGTCGTCGACCCCTGTGTTTTTCCGTCTTGGTTTCTATTTTCTGTGGAAAATTGCTTTTGTTTCTGCTTTGCGGCAATGGCTCTTGCAGTTTAGCCCTAGGGTTTTAGTGCAGGTGTCTGTTTTCTGATTGCTCTCTGAACTATGTACCATTATTGATTTAAATCTCTTTTTTTGTTTATTTAGTTGAGTGGTTGTGTTGTTATTGTTATTTGGATGTTTTTGTACTGTTGATTATCAAATGTAGCTAAGATTTAAGGATTTAAGAACTCAGACGTTCCATTTTTTAATCTACTTTGACTTGAGGTTTCTGTGTCACCTCTTGGTATTGATGTTTGCACGAACTCTTAGATTCTTTTTTCTGGGAATAATTTTGTTCGTCTTCTTTCTTTGGGTGCTGCATTCTGTTCGCTTTATTCTTTAGGATTAGGATTTATCGGAACACTAGTGAACTTTGGTTCTATTCCTCCTTTTAAATCTGACTCATGACTTTGTTTTCCATAGAAATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAGCTTTTTAATCGCTGGACCTTTGATGATGTCCAGGTTTCAACTTTCTTTCCCAATGCGCTGTTTCTTAGACTGATGTTTGTGGGATGCAATTTTGGGTTAAATTTAACATTACGTATGATGGAAAAAAAGCTTTTACTATTGGTGGATTCATTTCACTCACGTTGATTTCATTGTCTTCCGTGTTATAAATGAGATTAAAGTCTGAGAACAACTTTTTGCCAATCTGTCTTAGATGGCTATTATGTGAAGGTGTTGGTAATTACAATTATTTTCTGTAGAAGTGTTGTTGTTAGGTTCTAACCAATCTGCTTGAAGTTGGTTGGTTTGCTGAAAACACTACGCATCGAGTTATGATTGTTATTATCGTTGGGTTTATTCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACTATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGGTATGCATATTTGATCCACTGAATTCCTCTCATGTCGCATGTCAGCTGTGCTATGTCGTTACAATATTGACAAATACTTCTCATGAGGTGATTTCTACATGGGTAAATGTGATTAGTTTATTGTATTAGAGTTTGAAGTTAATTTAAAAGATAAGTAAATTCGCCAAAATTTATGAGGTTTAACAAGATCATATCAATAAAATTGAAACTAAGACTAAACCATGAAAGATTAAATTGGATATTTTTCAACCGTAGGAACCAAGTTGTATAATTTAACCTGACTTTTACTATAATGTGGATGTTCATTCCTCTGCTTTTAGAAGAAATTTGTTACGTGATTTATTGGATTACTTCCTGATTAGTATTATATCGAGGTCAATGACCCGAGGAAAGATTGTGGTCATGCTGCAATGTTTGAGTTATGAGGGTCTCTTTAACAATTTTTGGACATGGGACTTTGCAGTGGACCCCGAGAAGATGCCACTCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTAAATCAAGCAATATACCTTCTTACAACCGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATAGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGTTCATCAAACAGGTACATATTACAACATCTCATACTAAATTATCATCCATCCACCCTTGCACAGTATGTCATTGCGTTTTTTCTATTCTTGCAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAAGAAGGGCAGTTGGGGAAAAGAGAGAGCTCAAAGGTTCGACAAGAGCTTCGTTTTTGTTCTTTGCCAATGCTCATCTGACATTCTTCTAATTCTAAGTTTCTGTAGACATGGTTGCCTTCAATGTTTTGTTTCTTTTGAATTCATCCAATACTTGATTAAGCTTTAAGGTGTCCTCGTATGGCTGCATGTGCTTTTGACCATGATTTTGTAAACAGTTGAGGATTTATCAGAATATTTTGAAGAATTTGATGTTTTATTTGATGGATGGTCTTTATAAGTTCGTAATTCCCTCATTATTATCCTCAAAACTTGATTGCTTTAAACTCTAAGCCTCCATCATACTCTTAAAAGTTTCTTTTTCCTATTGTAAAATTTCATGTGTTCTTTTTAGGTTTTTAGGTTGATGTTATTATCCTGCTAGTTATCTATTTGACCTAATAAGCTCGACATGCACATATACGTTCTTTGACACGAGGTCCACGTGTCTTCTAATTACTTGGCTTAGTTCTTATCCGGCTAGTTATCTGTTTGGCCTAATAAGCTTGACATGCTCTTTATATTTTATTCGACACGAGGTCCATGTGTCTTCTAATTACTTGGCTTAGTTCTTATCTCAACATGCTCTTTAATATATTTTCTTCGACACAAGGTCCACGTGCCTTCTAATTACTTGGCTTAGTTCTTATCAGGCTAGTTATTTGTTTGACCCAATAAGCTCAACATGCTCTTTAATATATTTTCTTCGACACGAGGTCCACGTGTCTTCTAATTACTTGGCTTAGTTCTTATCCGGCTAGTTATCTGTTTGGCCTAATAAGCTTGACATGCTCTTTATATTTTATTCGACACGAGGTCCATGTGTCTTCTAATTACTTGGCTTAGTTCTTATCTCAACATGCTCTTTAATATATTTTCTTCGACACAAGGTCCACGTGCCTTCTAATTACTTGGCTTAGTTCTTATCAGGCTAGTTATTTGTTTGACCCAATAAGCTCAACATGCTCTTTAATATATTTTCTTCGACACAAGGTCCACGTGCCTTCTAATTACTTGGCTTAGTTCTTATCAGGCTAGTTATTTGTTTGACCCAATAAGCTCAACATGCTCTTTAATATATTTTCTTCGACACGAGGTCCACGTGTCTTCTAATTACTTGGCTTAGTTCTTATCATGCTAGTTATTTGTTTGGCCTAATAAGCTCGACATGCTCTTTAATATATTTTCTTCGATATGAGGTCCATGTGTCTTCTAATTACATGGCTTAGTTCTTATCAGGCTAGTTATCTGTTTGCTCTAATAAGCTCGACCTTTGACACAAGGTCCACATGTTTTTTTGATTACTCAATTTAGTTCTTATTAAGTTAGTTATCTATTTGGCCTAA CCCGTTAAAAATGTCCCCTCTCCACCCTAGCCGCCGATCCGAGCTTTTGCCCTCCTGGTTTTCATTTGCTCGTCTCCCTTCCAAAAATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAGCTTTTTAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACTATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGTGGACCCCGAGAAGATGCCACTCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTAAATCAAGCAATATACCTTCTTACAACCGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATAGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGTTCATCAAACAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCTTATCTATTTGGCCTAA ATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAGCTTTTTAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACTATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGTGGACCCCGAGAAGATGCCACTCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTAAATCAAGCAATATACCTTCTTACAACCGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATAGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGTTCATCAAACAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCTTATCTATTTGGCCTAA MAEAVEVVQELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANLIYLA
BLAST of CmaCh06G005610.1 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 9.7e-96 Identity = 178/189 (94.18%), Postives = 185/189 (97.88%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95 Identity = 179/206 (86.89%), Postives = 193/206 (93.69%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2) HSP 1 Score: 345.9 bits (886), Expect = 3.1e-94 Identity = 177/206 (85.92%), Postives = 192/206 (93.20%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4) HSP 1 Score: 306.6 bits (784), Expect = 2.1e-82 Identity = 151/189 (79.89%), Postives = 172/189 (91.01%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3) HSP 1 Score: 306.6 bits (784), Expect = 2.1e-82 Identity = 151/189 (79.89%), Postives = 172/189 (91.01%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 7.4e-103 Identity = 195/206 (94.66%), Postives = 201/206 (97.57%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 3.1e-101 Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 1.5e-100 Identity = 192/206 (93.20%), Postives = 198/206 (96.12%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 2.6e-100 Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TrEMBL
Match: W9RQK6_9ROSA (40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 1.9e-98 Identity = 184/198 (92.93%), Postives = 192/198 (96.97%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B) HSP 1 Score: 350.5 bits (898), Expect = 7.1e-97 Identity = 179/206 (86.89%), Postives = 193/206 (93.69%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A) HSP 1 Score: 345.9 bits (886), Expect = 1.7e-95 Identity = 177/206 (85.92%), Postives = 192/206 (93.20%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07 Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07 Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus]) HSP 1 Score: 381.3 bits (978), Expect = 1.1e-102 Identity = 195/206 (94.66%), Postives = 201/206 (97.57%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo]) HSP 1 Score: 380.2 bits (975), Expect = 2.4e-102 Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo]) HSP 1 Score: 379.8 bits (974), Expect = 3.1e-102 Identity = 195/206 (94.66%), Postives = 200/206 (97.09%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo]) HSP 1 Score: 379.8 bits (974), Expect = 3.1e-102 Identity = 195/206 (94.66%), Postives = 200/206 (97.09%), Query Frame = 1
BLAST of CmaCh06G005610.1 vs. NCBI nr
Match: gi|778725851|ref|XP_011659014.1| (PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus]) HSP 1 Score: 375.9 bits (964), Expect = 4.5e-101 Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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