CmaCh03G007660.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh03G007660.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHVA22-like protein
LocationCma_Chr03 : 5984060 .. 5987288 (+)
Sequence length1433
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTTTCACTCGCATCCAAACCCTTTTCTTTGGATTTTGAGATCTTCGTTCTTGAATCTCATTCATTTCGGTGAAGATTTAAGCAGCGATTTTGCTTCCAATCGATCAATGGCTCTTCTCGGCTTCGCAGTTACCAACGAGGTACAATCTCAATTCCCAAATTCGATCTTCTTTCCCATTTCTCCGTCTGCTCGGCCTTTTTCCGCTCGTTCTTTTGATTATTCTCAAATTTAGGAGCTTATTTTGACGAGTTTATTAATGTCTTCTGGATAAAGAGGATGATCAGTTAGTGATCGGATGGAAGAGGCGTTGTATGTTTCACTTTTACCGATCTCCTATGTAGGATGCATTTTCTTCTGGCTAGGATGAAAATCACTTGAACTCCATTGCAGGAAGTTGTGTATTGTAGTGAGCTGAGTTGAGATGCGATTAACCGTTTGAGACTCAAGCAGGTTAGGGATAAAAGTTTGAGTGATTCGCTGCAAACAATGTTAGAAGGATATGACGAGAACTCGAATGTGGGGAAGCTATGATATTTGGGATCCTTTATGCAGGTTGAATTGCAGCTGCTTCTATATCCTCTTGGTTCCAATGTTGTTCGTACGGCATGATAAGCTTCGACTTAAAAACTCCTTCAACACTTGGTCTTATTTGTCTTAACGCCTTTCCTAGTAGCTTGTTCAGCTTATTTTCACTTCTTTCTAAGAAATATACTAGTGGGAGATGTTATTCCATTATCTACTGGTTTTCATTATGCCTTTTGGCTTGTTTAGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGGTTGGGGAAAAAAAAATCTTTTCAGTTCTTTAGCTTTCTTGATTTTTAATTTCAAACAATGGATTATCTTGTATATTGTGTGTCATGGAGAAATATGCAAGCTCTTGGAGGTTTTGCAGGGTTGGCCTAGTTTTCTATGGGGCATGGGAAACATGTAAAGCAACGTACAATTTTGTGAGTTTGTAATCTGTAGGATCATTGTGTTGTCCCATTACGTATTGCCGTCAGCCTTACGATTTTAAAATGCGTGTGTTTGGGAGAGTTTTCCACACCTTATAAGAGATGTTTCGTTCTCCTCTCCAACCGACGTGGGATCTCACAATCTGACATATATGGACTATATTATATAGTATACTTAATCAATTTCATGGACGTGGATGAGCTTAAAACTAGTATTTTTGCTTCTGATTCTACTCATAATTTGTTATGTTATATGGCAATTAACATGTATGTAAACTTAAGCCTCTATATTCTGTCTAATGTGTCAGCACTTGGCATTAGGGGGTGGCATAAGGATGTTTGTTTTTAGGTAGCTTTTTTTTCCCTTGCCAAATAAACTACATGGCACTAAATAAAACTAAAACATATTTTTAGTCAGTCGAACACATTTCTGTCTTTCGTCTCCTTTTAAACCAAAAATGATGGGCGATAACTATAATTTTTAGAAAGATTGAGCTGTATTTCCGTACTTGTATGCTTGTTGGATTGCCATTAAACCTTGTTACAGTCTAGTCCTTGATATCAATTAGGAGACATATACATTGCTGACACCGATCGTTGCTGTATTTTTTTTTTTTTTTATCTGCTGTGAATTTGCAGGTTTCCAGTGTACTATCATCTGGAGTTGCGTTTCTTGTTTGTCCAGCTCCCAGCAACTCATGTATGTACGGGTTTCTGCATTTTCCCCCAGCAACTGATTTAAGTATGGATTTCTCCAGCAACTGATGTATGGATTTCTGCATTTCTAGATCTAATTTTCATAGGAAACAAAGTCTATTTTATCACAAACCCATGGTTACAAGTAATAAAGACCAAAAAAGGGGTTAGATCTTGTGAGAGTACCTACGGAGTTTGCAAAAGGATTCACCAATTGGAGTTAATAATTATAAAATATTTGTCAGGGACATCAATATAGAGCCAGAAAGGAGATAAACTGAAAGGAAGAAACGCCTATTCTCCTTCAGAGATCTCCTGCCATTTCTTTTCAGCAAAGAACCAAAATAGACCTTGAACAACACTTAGAGCGACACTTCAGAGATCTCCTACATTTAAACCAAATATGTTCTGAACTATAGTCTTCCATATCTATTCGTTGCTTTTCAACACTTATCGTTGCTCATTTTCAGGGTGCAGAGAAATTATACACGTACCAGCTGCATCCTCTCTTCCTTGGGCATACGATCTTGGGGGCGGTTTCAGATGAAGTGGTAACCCTCCCTCTTATAGTCATGTCTTGCCTCCACAGAAATATTAGCTCTTCAAAGGGCTTAAAAACCATCCACTTTATAAATATATAGACCTTTTATAGTCTCCGCTGTTTTATACAAAATTAAGGAGATCCCATATGCTCTCTAGTCCCTAACAATACAAGTTTTTTCTTTGGAGATTAAACAAACGATATTTAGTGTTTGTTTTTCGATTTTCAACTGCAGGTGAAAACCATTGCTGCACGTCAGCCAGAGATTCAGTAATTTAGAACCATGTTTATGAGGCTAATGAGATCGGGTGAAGACCGTAGCAATATCCTGCTTATTGGTTAATTTGTAATTCCATTTCTTTCAACTCTTTATCTTATCTCAACCTCTGGATCAGTAGAAAGGCTTGGGTTTGCAAGACCAAATCAGGCTGGAAGGTGCCAACAAATCGAGGATCAAATAAGACTTAAGCTTGGATTCAGAGTCGGATATTGATGATCGACTTATTGCCAACAGTTTCCATTCGCTGGTGTAGTTGCAACAATATCAACCTCCGGTTTCCTGGAAGTTCATATAGGTAGCTGCTTGTAAAAATGAGTTTGCCTCTTAAGATAGTGTCGATCAACAGACTTAGTCTTCCTTTTTCCAATACCTTTCACACAAAACTGAATACTTAAGGAAATATTAGAATTCTTTTCACAAGTTATATAAGTATTTGTAATCCCCTACAGTATTGATCCTATGCACCATCTGATTCCATGGTGCTGAGTAAAAAAAATTATAATGTTACAATTGAAACAGGGCCAAGCGTATACGTCAGAAAAATAGATTCCTATACTCCTACGACAAGATCATAAATCAGAGTTAATATGGTTCCCACTTTCCCAGTCCAGAATCCATATAGCTTTTGAATGGTGTAGAGTTGATGTCCTTAGTCCTTAC

mRNA sequence

TCAATTTTCACTCGCATCCAAACCCTTTTCTTTGGATTTTGAGATCTTCGTTCTTGAATCTCATTCATTTCGGTGAAGATTTAAGCAGCGATTTTGCTTCCAATCGATCAATGGCTCTTCTCGGCTTCGCAGTTACCAACGAGGATGCATTTTCTTCTGGCTAGGATGAAAATCACTTGAACTCCATTGCAGGAAGTTGTGTATTGTAGTGAGCTGAGTTGAGATGCGATTAACCGTTTGAGACTCAAGCAGGTTAGGGATAAAAGTTTGAGTGATTCGCTGCAAACAATGTTAGAAGGATATGACGAGAACTCGAATGTGGGGAAGCTATGATATTTGGGATCCTTTATGCAGGTTGAATTGCAGCTGCTTCTATATCCTCTTGGTTCCAATGTTGTTCGTACGGCATGATAAGCTTCGACTTAAAAACTCCTTCAACACTTGGTCTTATTTGTCTTAACGCCTTTCCTAGTAGCTTGTTCAGCTTATTTTCACTTCTTTCTAAGAAATATACTAGTGGGAGATGTTATTCCATTATCTACTGGTTTTCATTATGCCTTTTGGCTTGTTTAGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGCACTTGGCATTAGGGGGTGGCATAAGGATGTTTGTTTTTAGGTTTCCAGTGTACTATCATCTGGAGTTGCGTTTCTTGTTTGTCCAGCTCCCAGCAACTCATGGTGCAGAGAAATTATACACGTACCAGCTGCATCCTCTCTTCCTTGGGCATACGATCTTGGGGGCGGTTTCAGATGAAGTGGTGAAAACCATTGCTGCACGTCAGCCAGAGATTCATAGAAAGGCTTGGGTTTGCAAGACCAAATCAGGCTGGAAGGTGCCAACAAATCGAGGATCAAATAAGACTTAAGCTTGGATTCAGAGTCGGATATTGATGATCGACTTATTGCCAACAGTTTCCATTCGCTGGTGTAGTTGCAACAATATCAACCTCCGGTTTCCTGGAAGTTCATATAGGTAGCTGCTTGTAAAAATGAGTTTGCCTCTTAAGATAGTGTCGATCAACAGACTTAGTCTTCCTTTTTCCAATACCTTTCACACAAAACTGAATACTTAAGGAAATATTAGAATTCTTTTCACAAGTTATATAAGTATTTGTAATCCCCTACAGTATTGATCCTATGCACCATCTGATTCCATGGTGCTGAGTAAAAAAAATTATAATGTTACAATTGAAACAGGGCCAAGCGTATACGTCAGAAAAATAGATTCCTATACTCCTACGACAAGATCATAAATCAGAGTTAATATGGTTCCCACTTTCCCAGTCCAGAATCCATATAGCTTTTGAATGGTGTAGAGTTGATGTCCTTAGTCCTTAC

Coding sequence (CDS)

ATGTTATTCCATTATCTACTGGTTTTCATTATGCCTTTTGGCTTGTTTAGTTGCTCTGTAGGGATTGTCTTACCTGTGAATTCCCCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAATAGAAGTGGCTTTTGTATTGGGCAGCACTTGGCATTAGGGGGTGGCATAAGGATGTTTGTTTTTAGGTTTCCAGTGTACTATCATCTGGAGTTGCGTTTCTTGTTTGTCCAGCTCCCAGCAACTCATGGTGCAGAGAAATTATACACGTACCAGCTGCATCCTCTCTTCCTTGGGCATACGATCTTGGGGGCGGTTTCAGATGAAGTGGTGAAAACCATTGCTGCACGTCAGCCAGAGATTCATAGAAAGGCTTGGGTTTGCAAGACCAAATCAGGCTGGAAGGTGCCAACAAATCGAGGATCAAATAAGACTTAA

Protein sequence

MLFHYLLVFIMPFGLFSCSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMFVFRFPVYYHLELRFLFVQLPATHGAEKLYTYQLHPLFLGHTILGAVSDEVVKTIAARQPEIHRKAWVCKTKSGWKVPTNRGSNKT
BLAST of CmaCh03G007660.1 vs. TrEMBL
Match: I7CU90_9CARY (HVA22-like protein OS=Tamarix hispida PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMFVFR----FPVYYHLELR 77
           C+VG VLPV +  +   RK +                  I +F  +    FP+YYH +L 
Sbjct: 32  CTVGTVLPVYTTFKAIERKDQNEQEKWLIYWAAYGSFSLIEVFTDKLLSWFPMYYHFKLA 91

Query: 78  FL-FVQLPATHGAEKLYTYQLHPLFLGH-----TILGAVSDEVVKTIAARQPEI 122
           FL ++QLP T+GA++LY   L PLFL +       LG+   E+VK ++ARQ EI
Sbjct: 92  FLVWLQLPYTYGAKQLYVKHLRPLFLKYEDRLDQFLGSAYHEMVKLVSARQGEI 145

BLAST of CmaCh03G007660.1 vs. TrEMBL
Match: B9SGI8_RICCO (HVA22-like protein OS=Ricinus communis GN=RCOM_0553260 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-07
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMF----VFRFPVYYHLELR 77
           CSVG+VLPV S  +   RK +   +              + +F    ++ FP+YYH++  
Sbjct: 32  CSVGVVLPVYSTLKAIERKDQNEQQKWLIYWAAYGSFSLVEVFTDKLLYWFPMYYHVKFA 91

Query: 78  FL-FVQLPATHGAEKLYTYQLHPLFLGH-----TILGAVSDEVVKTIAARQPEI 122
           FL ++QLP+T GA+++YT  L P FL H      ++G   DE+ K ++  + EI
Sbjct: 92  FLVWLQLPSTDGAKQIYTNHLRPFFLRHQARVDMLMGFAYDEMGKIVSTHRAEI 145

BLAST of CmaCh03G007660.1 vs. TrEMBL
Match: A0A0A0KJ20_CUCSA (HVA22-like protein OS=Cucumis sativus GN=Csa_6G502030 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRM-------FVFRFPVYYHL 77
           CS+GIVLPV S  +   +K +   +       + A  G + +       F+   PVYYHL
Sbjct: 32  CSIGIVLPVYSTFKAIEKKDQNDQQKWLI---YWAAYGSLSLVEAYSDKFLSWVPVYYHL 91

Query: 78  ELRFL-FVQLPATHGAEKLYTYQLHPLFLGHT-----ILGAVSDEV 111
           +  FL ++QLPAT GA+KLY   L P  L H      ILG  SDE+
Sbjct: 92  KFAFLVWLQLPATSGAKKLYMNYLRPFLLKHQGKVDWILGYASDEM 134

BLAST of CmaCh03G007660.1 vs. NCBI nr
Match: gi|659080246|ref|XP_008440689.1| (PREDICTED: HVA22-like protein k [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.9e-11
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMFVFR----FPVYYHLELR 77
           CSVGIVLPV S  +   +K +   +              +  F  +    FPVYYHL+  
Sbjct: 32  CSVGIVLPVYSTFKAIEKKDQNEQQKWLLYWAAYGSFSLVEAFSDKLLSWFPVYYHLKFA 91

Query: 78  FL-FVQLPATHGAEKLYTYQLHPLFLGH-----TILGAVSDEVVKTIAARQPEI 122
           FL ++QLPAT GA+KLYT  L P  L H      ILG++SDE+VKTI+  Q EI
Sbjct: 92  FLVWLQLPATDGAKKLYTSHLRPFLLKHQARVDRILGSISDEMVKTISRHQAEI 145

BLAST of CmaCh03G007660.1 vs. NCBI nr
Match: gi|449451505|ref|XP_004143502.1| (PREDICTED: HVA22-like protein k isoform X1 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRM-------FVFRFPVYYHL 77
           CS+GIVLPV S  +   +K +   +       + A  G + +       F+   PVYYHL
Sbjct: 32  CSIGIVLPVYSTFKAIEKKDQNDQQKWLI---YWAAYGSLSLVEAYSDKFLSWVPVYYHL 91

Query: 78  ELRFL-FVQLPATHGAEKLYTYQLHPLFLGHT-----ILGAVSDEVVKTIAARQPEI 122
           +  FL ++QLPAT GA+KLY   L P  L H      ILG  SDE+VKTI+  Q EI
Sbjct: 92  KFAFLVWLQLPATSGAKKLYMNYLRPFLLKHQGKVDWILGYASDEMVKTISRHQTEI 145

BLAST of CmaCh03G007660.1 vs. NCBI nr
Match: gi|397746449|gb|AFO63292.1| (bZIP13 [Tamarix hispida])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMFVFR----FPVYYHLELR 77
           C+VG VLPV +  +   RK +                  I +F  +    FP+YYH +L 
Sbjct: 32  CTVGTVLPVYTTFKAIERKDQNEQEKWLIYWAAYGSFSLIEVFTDKLLSWFPMYYHFKLA 91

Query: 78  FL-FVQLPATHGAEKLYTYQLHPLFLGH-----TILGAVSDEVVKTIAARQPEI 122
           FL ++QLP T+GA++LY   L PLFL +       LG+   E+VK ++ARQ EI
Sbjct: 92  FLVWLQLPYTYGAKQLYVKHLRPLFLKYEDRLDQFLGSAYHEMVKLVSARQGEI 145

BLAST of CmaCh03G007660.1 vs. NCBI nr
Match: gi|1009145210|ref|XP_015890208.1| (PREDICTED: scarecrow-like protein 15 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 44/117 (37.61%), Postives = 59/117 (50.43%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRM-------FVFRFPVYYHL 77
           CSVGIVLPV S  +   RK     +       + A  G   +       F+  FP+YYHL
Sbjct: 557 CSVGIVLPVYSTCKAIERKDHDDQQKWLL---YWAAYGSFSLVEVFSDKFISWFPLYYHL 616

Query: 78  ELRFL-FVQLPATHGAEKLYTYQLHPLFLGHT-----ILGAVSDEVVKTIAARQPEI 122
           +  FL ++QLP+  GA++LY   L P FL H      +LG    E+ K I+A Q EI
Sbjct: 617 KFAFLVWLQLPSVDGAKQLYISHLRPFFLRHQARIDHVLGIAYGEMAKLISAHQTEI 670

BLAST of CmaCh03G007660.1 vs. NCBI nr
Match: gi|255568265|ref|XP_002525107.1| (PREDICTED: HVA22-like protein k [Ricinus communis])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1

Query: 18  CSVGIVLPVNSPSRQSRRKIKMSNRSGFCIGQHLALGGGIRMF----VFRFPVYYHLELR 77
           CSVG+VLPV S  +   RK +   +              + +F    ++ FP+YYH++  
Sbjct: 32  CSVGVVLPVYSTLKAIERKDQNEQQKWLIYWAAYGSFSLVEVFTDKLLYWFPMYYHVKFA 91

Query: 78  FL-FVQLPATHGAEKLYTYQLHPLFLGH-----TILGAVSDEVVKTIAARQPEI 122
           FL ++QLP+T GA+++YT  L P FL H      ++G   DE+ K ++  + EI
Sbjct: 92  FLVWLQLPSTDGAKQIYTNHLRPFFLRHQARVDMLMGFAYDEMGKIVSTHRAEI 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
I7CU90_9CARY1.8e-0736.84HVA22-like protein OS=Tamarix hispida PE=2 SV=1[more]
B9SGI8_RICCO2.4e-0733.33HVA22-like protein OS=Ricinus communis GN=RCOM_0553260 PE=3 SV=1[more]
A0A0A0KJ20_CUCSA9.9e-0638.68HVA22-like protein OS=Cucumis sativus GN=Csa_6G502030 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659080246|ref|XP_008440689.1|3.9e-1142.98PREDICTED: HVA22-like protein k [Cucumis melo][more]
gi|449451505|ref|XP_004143502.1|3.6e-0941.03PREDICTED: HVA22-like protein k isoform X1 [Cucumis sativus][more]
gi|397746449|gb|AFO63292.1|2.6e-0736.84bZIP13 [Tamarix hispida][more]
gi|1009145210|ref|XP_015890208.1|3.4e-0737.61PREDICTED: scarecrow-like protein 15 [Ziziphus jujuba][more]
gi|255568265|ref|XP_002525107.1|3.4e-0733.33PREDICTED: HVA22-like protein k [Ricinus communis][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh03G007660CmaCh03G007660gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh03G007660.1CmaCh03G007660.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G007660.1.exon.7CmaCh03G007660.1.exon.7exon
CmaCh03G007660.1.exon.6CmaCh03G007660.1.exon.6exon
CmaCh03G007660.1.exon.5CmaCh03G007660.1.exon.5exon
CmaCh03G007660.1.exon.4CmaCh03G007660.1.exon.4exon
CmaCh03G007660.1.exon.3CmaCh03G007660.1.exon.3exon
CmaCh03G007660.1.exon.2CmaCh03G007660.1.exon.2exon
CmaCh03G007660.1.exon.1CmaCh03G007660.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G007660.1.five_prime_UTR.1CmaCh03G007660.1.five_prime_UTR.1five_prime_UTR
CmaCh03G007660.1.five_prime_UTR.2CmaCh03G007660.1.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G007660.1.CDS.1CmaCh03G007660.1.CDS.1CDS
CmaCh03G007660.1.CDS.2CmaCh03G007660.1.CDS.2CDS
CmaCh03G007660.1.CDS.3CmaCh03G007660.1.CDS.3CDS
CmaCh03G007660.1.CDS.4CmaCh03G007660.1.CDS.4CDS
CmaCh03G007660.1.CDS.5CmaCh03G007660.1.CDS.5CDS
CmaCh03G007660.1.CDS.6CmaCh03G007660.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G007660.1.three_prime_UTR.1CmaCh03G007660.1.three_prime_UTR.1three_prime_UTR