CmaCh02G005320.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005320.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 2938872 .. 2939571 (+)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATTCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAATTCTTTTTTTTTCTTTTTTAAGAATTAG

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Protein sequence

MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHN

Homology

[Close]

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQ------ILQQTPSTPIGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T IG+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD  +  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQKFDGLREEEEE--GDCSVCCEALKGE-EEVSRIPC 198
             +  E      GA  SAIER+++QKFDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 198

[Close]

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 1


Query: 20  NGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLS 79
           +GT  +G   + +  ++   S   ++    ++L QTP  P  +ALF   LR LQ P F  
Sbjct: 16  SGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF-- 75

Query: 80  NCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDL--- 139
             Y+ Q LSS +I  AA   +   I+S  LQ+   N + NFHI+ EVD   +IW+     
Sbjct: 76  --YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGG 135

Query: 140 ------DPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-E 198
                 +  +++E  PA   G   +  ERL+ ++     + EE GDCS+C + L  E+ E
Sbjct: 136 GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE-----KMEELGDCSICLDELSCEKRE 194

[Close]

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 97/198 (48.99%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68
           LS +C I S+   T        QL+E+RL   + L+S SS QI+QQT  TPI DALF F 
Sbjct: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL- 188
           D+   I VDLD     +YSP   NGAPAS IERL  +K+D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGH 198
                + EEEV+RIPCGH
Sbjct: 187 CEREEEKEEEVTRIPCGH 193

[Close]

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 85/193 (44.04%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCS  +T N            L  R G+S+ LI     QILQQTPS  +G+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNMDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    N+  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALK 189
           V+  E + +    F  E  SP    GAP SAIERL+++KFD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 185

Query: 190 GE-EEVSRIPCGH 198
           G+ +EVSRIPCGH
Sbjct: 188 GQGKEVSRIPCGH 185

The following BLAST results are available for this feature:

BLAST of CmaCh02G005320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G005320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	1.3e-43	52.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	3.2e-39	48.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	1.1e-23	44.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	4.1e-18	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K2W2_CUCSA	1.4e-15	34.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1	[more]

BLAST of CmaCh02G005320.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G005320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	1.8e-43	52.08	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	4.6e-39	48.26	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	9.3e-32	48.99	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	1.6e-23	44.83	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	2.1e-20	44.04	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G005320	CmaCh02G005320	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005320.1	CmaCh02G005320.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005320.1.exon.1	CmaCh02G005320.1.exon.1	exon
CmaCh02G005320.1.exon.2	CmaCh02G005320.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005320.1.CDS.1	CmaCh02G005320.1.CDS.1	CDS
CmaCh02G005320.1.CDS.2	CmaCh02G005320.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 170..198 score: 8.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 164..197 score: 5.0