CmaCh02G004960.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G004960.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr02 : 2646248 .. 2646865 (-)
Sequence length	618

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

mRNA sequence

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Coding sequence (CDS)

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Protein sequence

MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

Homology

[Close]

BLAST of CmaCh02G004960.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 73/205 (35.61%), Postives = 116/205 (56.59%), Query Frame = 1


Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRL LS +V  NII E T   +   L ++Y   +  NK+YL ++L+ L MSEG + + H+
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           N FN +++QL+++ +  E+E K ++L++SLP S+D +   I   + + +LK D    ++L
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK-DVTSALLL 182

Query: 122 SESTRKREIGNSSSSALSVDQRGRSKPKSPNK-----GRSKSKNREKSPNRPNVTCWNCG 181
           +E  RK+    +   AL  + RGRS  +S N       R KSKNR KS  R    C+NC 
Sbjct: 183 NEKMRKKP--ENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVR---NCYNCN 242

Query: 182 EKVHFRTGCTRPKRKQNHKSGDDDD 202
           +  HF+  C  P++ +   SG  +D
Sbjct: 243 QPGHFKRDCPNPRKGKGETSGQKND 261

[Close]

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL RNVAFNI+KEKTTSDL+K LSNMYEKPS MNKVYLM R FNLQM E GSV DH
Sbjct: 16  LIRLTLLRNVAFNIVKEKTTSDLLKTLSNMYEKPSVMNKVYLMHRFFNLQMPENGSVSDH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           +NEFN+IVSQL+SV+IN EDEIK LILMSSLPESWDTVVA ISSS GS+ LKFD+IRDVV
Sbjct: 76  VNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSSHGSENLKFDEIRDVV 135

Query: 121 LSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKV 180
           LSES RKRE+G+SS +ALSVD+RGRSK K  N+ GRSKSKNR KS NR NVT WNCGEK 
Sbjct: 136 LSESIRKREVGDSSGNALSVDRRGRSKTKGQNQHGRSKSKNRGKSLNRSNVTYWNCGEKG 195

Query: 181 HFRTGCTRPKRKQN 194
           HFRT CT+PK+KQN
Sbjct: 196 HFRTNCTKPKKKQN 209

[Close]

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_044546 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

[Close]

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151RTE7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032664 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151SI41_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_000694 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

[Close]

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

[Close]

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012334432|gb|KYP45793.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012322120|gb|KYP34487.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012343314|gb|KYP54506.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1


Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

[Close]

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012328712|gb|KYP40337.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 116/199 (58.29%), Postives = 144/199 (72.36%), Query Frame = 1


Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRLTLSRNVAFNI KEKTT+ LM ALS+MYEKPSA NKV+L+RRLFNL+M+EG S   HI
Sbjct: 40  IRLTLSRNVAFNIAKEKTTASLMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHI 99

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           NE N I  QLSSV INF++E++ LIL+SSLPESW+  V A+SSS GS+KLKFD +RD+VL
Sbjct: 100 NELNTITIQLSSVGINFDEEVRALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVL 159

Query: 122 SESTRKREIGNS-SSSALSVDQRGRSKPKSPNKG----RSKSKNREKSPNRPNVTCWNCG 181
           SE  R+RE G S +SS L  + RGRS  +   +G    RSKS+N + S     + CWNCG
Sbjct: 160 SEEVRRRETGESTTSSVLHTESRGRSSTRGTGRGKSKERSKSRNHQSSNKSKTIECWNCG 219

Query: 182 EKVHFRTGCTRPKRKQNHK 196
           +  H++  C    +KQ  K
Sbjct: 220 KTGHYKNQCRSASKKQEVK 238

The following BLAST results are available for this feature:

BLAST of CmaCh02G004960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.1e-22	35.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmaCh02G004960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
K4BR07_SOLLC	7.1e-74	78.87	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A151QVU7_CAJCA	6.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TNK0_CAJCA	6.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RTE7_CAJCA	6.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SI41_CAJCA	1.5e-52	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmaCh02G004960.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G004960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012357422\|gb\|KYP68607.1\|	9.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012334432\|gb\|KYP45793.1\|	9.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012322120\|gb\|KYP34487.1\|	9.9e-53	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012343314\|gb\|KYP54506.1\|	2.2e-52	54.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012328712\|gb\|KYP40337.1\|	1.9e-51	58.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G004960	CmaCh02G004960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004960.1	CmaCh02G004960.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004960.1.CDS.1	CmaCh02G004960.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004960.1.exon.1	CmaCh02G004960.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 153..194 score: 6.9
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..146 score: 4.5
None	No IPR available	PANTHER	PTHR34676:SF1	SUBFAMILY NOT NAMED	coord: 1..146 score: 4.5
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..129 score: 2.3