CmaCh02G004960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G004960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr02 : 2646248 .. 2646865 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

mRNA sequence

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Coding sequence (CDS)

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Protein sequence

MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
Homology
[Close]
BLAST of CmaCh02G004960 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 73/205 (35.61%), Postives = 116/205 (56.59%), Query Frame = 1 

Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRL LS +V  NII E T   +   L ++Y   +  NK+YL ++L+ L MSEG + + H+
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           N FN +++QL+++ +  E+E K ++L++SLP S+D +   I   + + +LK D    ++L
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK-DVTSALLL 182

Query: 122 SESTRKREIGNSSSSALSVDQRGRSKPKSPNK-----GRSKSKNREKSPNRPNVTCWNCG 181
           +E  RK+    +   AL  + RGRS  +S N       R KSKNR KS  R    C+NC 
Sbjct: 183 NEKMRKKP--ENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVR---NCYNCN 242

Query: 182 EKVHFRTGCTRPKRKQNHKSGDDDD 202
           +  HF+  C  P++ +   SG  +D
Sbjct: 243 QPGHFKRDCPNPRKGKGETSGQKND 261

[Close]
BLAST of CmaCh02G004960 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL RNVAFNI+KEKTTSDL+K LSNMYEKPS MNKVYLM R FNLQM E GSV DH
Sbjct: 16  LIRLTLLRNVAFNIVKEKTTSDLLKTLSNMYEKPSVMNKVYLMHRFFNLQMPENGSVSDH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           +NEFN+IVSQL+SV+IN EDEIK LILMSSLPESWDTVVA ISSS GS+ LKFD+IRDVV
Sbjct: 76  VNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSSHGSENLKFDEIRDVV 135

Query: 121 LSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKV 180
           LSES RKRE+G+SS +ALSVD+RGRSK K  N+ GRSKSKNR KS NR NVT WNCGEK 
Sbjct: 136 LSESIRKREVGDSSGNALSVDRRGRSKTKGQNQHGRSKSKNRGKSLNRSNVTYWNCGEKG 195

Query: 181 HFRTGCTRPKRKQN 194
           HFRT CT+PK+KQN
Sbjct: 196 HFRTNCTKPKKKQN 209

[Close]
BLAST of CmaCh02G004960 vs. TrEMBL
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_044546 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]
BLAST of CmaCh02G004960 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

[Close]
BLAST of CmaCh02G004960 vs. TrEMBL
Match: A0A151RTE7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032664 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]
BLAST of CmaCh02G004960 vs. TrEMBL
Match: A0A151SI41_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_000694 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

[Close]
BLAST of CmaCh02G004960 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

[Close]
BLAST of CmaCh02G004960 vs. NCBI nr
Match: gi|1012334432|gb|KYP45793.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]
BLAST of CmaCh02G004960 vs. NCBI nr
Match: gi|1012322120|gb|KYP34487.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

[Close]
BLAST of CmaCh02G004960 vs. NCBI nr
Match: gi|1012343314|gb|KYP54506.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1 

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

[Close]
BLAST of CmaCh02G004960 vs. NCBI nr
Match: gi|1012328712|gb|KYP40337.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 116/199 (58.29%), Postives = 144/199 (72.36%), Query Frame = 1 

Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRLTLSRNVAFNI KEKTT+ LM ALS+MYEKPSA NKV+L+RRLFNL+M+EG S   HI
Sbjct: 40  IRLTLSRNVAFNIAKEKTTASLMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHI 99

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           NE N I  QLSSV INF++E++ LIL+SSLPESW+  V A+SSS GS+KLKFD +RD+VL
Sbjct: 100 NELNTITIQLSSVGINFDEEVRALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVL 159

Query: 122 SESTRKREIGNS-SSSALSVDQRGRSKPKSPNKG----RSKSKNREKSPNRPNVTCWNCG 181
           SE  R+RE G S +SS L  + RGRS  +   +G    RSKS+N + S     + CWNCG
Sbjct: 160 SEEVRRRETGESTTSSVLHTESRGRSSTRGTGRGKSKERSKSRNHQSSNKSKTIECWNCG 219

Query: 182 EKVHFRTGCTRPKRKQNHK 196
           +  H++  C    +KQ  K
Sbjct: 220 KTGHYKNQCRSASKKQEVK 238

The following BLAST results are available for this feature:
BLAST of CmaCh02G004960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.1e-2235.61Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmaCh02G004960 vs. TrEMBL
Match NameE-valueIdentityDescription
K4BR07_SOLLC7.1e-7478.87Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A151QVU7_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TNK0_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RTE7_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SI41_CAJCA1.5e-5254.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CmaCh02G004960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G004960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012357422|gb|KYP68607.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012334432|gb|KYP45793.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012322120|gb|KYP34487.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012343314|gb|KYP54506.1|2.2e-5254.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012328712|gb|KYP40337.1|1.9e-5158.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G004960.1CmaCh02G004960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 153..194
score: 6.9
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..146
score: 4.5
NoneNo IPR availablePANTHERPTHR34676:SF1SUBFAMILY NOT NAMEDcoord: 1..146
score: 4.5
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..129
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G004960Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G004960Cucumber (Gy14) v1cgycmaB0228
CmaCh02G004960Cucumber (Gy14) v1cgycmaB0118
CmaCh02G004960Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G004960Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G004960Wild cucumber (PI 183967)cmacpiB595
CmaCh02G004960Wild cucumber (PI 183967)cmacpiB631
CmaCh02G004960Cucumber (Chinese Long) v2cmacuB590
CmaCh02G004960Cucumber (Chinese Long) v2cmacuB626
CmaCh02G004960Melon (DHL92) v3.5.1cmameB534
CmaCh02G004960Melon (DHL92) v3.5.1cmameB584
CmaCh02G004960Watermelon (Charleston Gray)cmawcgB520
CmaCh02G004960Watermelon (Charleston Gray)cmawcgB530
CmaCh02G004960Watermelon (97103) v1cmawmB570
CmaCh02G004960Watermelon (97103) v1cmawmB595
CmaCh02G004960Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G004960Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G004960Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G004960Bottle gourd (USVL1VR-Ls)cmalsiB567
CmaCh02G004960Cucumber (Gy14) v2cgybcmaB231
CmaCh02G004960Cucumber (Gy14) v2cgybcmaB816
CmaCh02G004960Melon (DHL92) v3.6.1cmamedB616
CmaCh02G004960Silver-seed gourdcarcmaB0573
CmaCh02G004960Silver-seed gourdcarcmaB1309
CmaCh02G004960Cucumber (Chinese Long) v3cmacucB0703
CmaCh02G004960Cucumber (Chinese Long) v3cmacucB0748
CmaCh02G004960Watermelon (97103) v2cmawmbB617
CmaCh02G004960Wax gourdcmawgoB0768
CmaCh02G004960Wax gourdcmawgoB0755
CmaCh02G004960Wax gourdcmawgoB0759