CmaCh02G004960.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh02G004960.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr02 : 2646248 .. 2646865 (-)
Sequence length618
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

mRNA sequence

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Coding sequence (CDS)

ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCGCGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTTGACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

Protein sequence

MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
BLAST of CmaCh02G004960.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 73/205 (35.61%), Postives = 116/205 (56.59%), Query Frame = 1

Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRL LS +V  NII E T   +   L ++Y   +  NK+YL ++L+ L MSEG + + H+
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           N FN +++QL+++ +  E+E K ++L++SLP S+D +   I   + + +LK D    ++L
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK-DVTSALLL 182

Query: 122 SESTRKREIGNSSSSALSVDQRGRSKPKSPNK-----GRSKSKNREKSPNRPNVTCWNCG 181
           +E  RK+    +   AL  + RGRS  +S N       R KSKNR KS  R    C+NC 
Sbjct: 183 NEKMRKKP--ENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVR---NCYNCN 242

Query: 182 EKVHFRTGCTRPKRKQNHKSGDDDD 202
           +  HF+  C  P++ +   SG  +D
Sbjct: 243 QPGHFKRDCPNPRKGKGETSGQKND 261

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL RNVAFNI+KEKTTSDL+K LSNMYEKPS MNKVYLM R FNLQM E GSV DH
Sbjct: 16  LIRLTLLRNVAFNIVKEKTTSDLLKTLSNMYEKPSVMNKVYLMHRFFNLQMPENGSVSDH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           +NEFN+IVSQL+SV+IN EDEIK LILMSSLPESWDTVVA ISSS GS+ LKFD+IRDVV
Sbjct: 76  VNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSSHGSENLKFDEIRDVV 135

Query: 121 LSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKV 180
           LSES RKRE+G+SS +ALSVD+RGRSK K  N+ GRSKSKNR KS NR NVT WNCGEK 
Sbjct: 136 LSESIRKREVGDSSGNALSVDRRGRSKTKGQNQHGRSKSKNRGKSLNRSNVTYWNCGEKG 195

Query: 181 HFRTGCTRPKRKQN 194
           HFRT CT+PK+KQN
Sbjct: 196 HFRTNCTKPKKKQN 209

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_044546 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151RTE7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032664 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

BLAST of CmaCh02G004960.1 vs. TrEMBL
Match: A0A151SI41_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_000694 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 39  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 98

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 99  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 158

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 159 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 218

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 219 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 248

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012334432|gb|KYP45793.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012322120|gb|KYP34487.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-53
Identity = 115/210 (54.76%), Postives = 156/210 (74.29%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           +IRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 61  VIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 120

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 121 INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 180

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K  N +GRSKS+ + +   R ++ CWNC
Sbjct: 181 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRGRSKSRAKGQPKFRNDIVCWNC 240

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +NHK  DDD+S N+
Sbjct: 241 DKRGHFTNQCKAPKKNKNHKKRDDDESANA 270

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012343314|gb|KYP54506.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1

Query: 1   MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDH 60
           MIRLTL++NVAFNI+ EKTT+ LMK LS+MYEKPSA NKV++MRRLFNL+M EG  V++H
Sbjct: 16  MIRLTLAKNVAFNIVNEKTTASLMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINH 75

Query: 61  INEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVV 120
           IN+FN I++ L SV+I FEDE+K LIL+SSLPESW   V A+SSS   +KLK + IRD++
Sbjct: 76  INDFNTILAMLESVQIKFEDEVKALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLI 135

Query: 121 LSESTRKRE----IGNSSSSALSVDQRGRSKPKS-PNKGRSKSKNREKSPNRPNVTCWNC 180
           LSE  R+R+      ++SSSAL+ + RGR+  K   N+GRSKS+ + +   R ++ CWNC
Sbjct: 136 LSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNNRGRSKSRAKGQPKFRNDIVCWNC 195

Query: 181 GEKVHFRTGCTRPKRKQNHKSGDDDDSINS 206
            ++ HF   C  PK+ +N K  DDD+S N+
Sbjct: 196 DKRGHFTNQCKAPKKNKNRKKRDDDESANA 225

BLAST of CmaCh02G004960.1 vs. NCBI nr
Match: gi|1012328712|gb|KYP40337.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 116/199 (58.29%), Postives = 144/199 (72.36%), Query Frame = 1

Query: 2   IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHI 61
           IRLTLSRNVAFNI KEKTT+ LM ALS+MYEKPSA NKV+L+RRLFNL+M+EG S   HI
Sbjct: 40  IRLTLSRNVAFNIAKEKTTASLMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHI 99

Query: 62  NEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVL 121
           NE N I  QLSSV INF++E++ LIL+SSLPESW+  V A+SSS GS+KLKFD +RD+VL
Sbjct: 100 NELNTITIQLSSVGINFDEEVRALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVL 159

Query: 122 SESTRKREIGNS-SSSALSVDQRGRSKPKSPNKG----RSKSKNREKSPNRPNVTCWNCG 181
           SE  R+RE G S +SS L  + RGRS  +   +G    RSKS+N + S     + CWNCG
Sbjct: 160 SEEVRRRETGESTTSSVLHTESRGRSSTRGTGRGKSKERSKSRNHQSSNKSKTIECWNCG 219

Query: 182 EKVHFRTGCTRPKRKQNHK 196
           +  H++  C    +KQ  K
Sbjct: 220 KTGHYKNQCRSASKKQEVK 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
POLX_TOBAC1.1e-2235.61Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
K4BR07_SOLLC7.1e-7478.87Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A151QVU7_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TNK0_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RTE7_CAJCA6.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SI41_CAJCA1.5e-5254.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|1012357422|gb|KYP68607.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012334432|gb|KYP45793.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012322120|gb|KYP34487.1|9.9e-5354.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012343314|gb|KYP54506.1|2.2e-5254.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012328712|gb|KYP40337.1|1.9e-5158.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G004960CmaCh02G004960gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G004960.1CmaCh02G004960.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G004960.1.CDS.1CmaCh02G004960.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G004960.1.exon.1CmaCh02G004960.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 153..194
score: 6.9
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..146
score: 4.5
NoneNo IPR availablePANTHERPTHR34676:SF1SUBFAMILY NOT NAMEDcoord: 1..146
score: 4.5
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..129
score: 2.3